INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Ala
ACC      bact-Ala-r2-022416
STATES   242
NODES    65
CLEN     76
W        1218
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 04:10:05 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ala-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     16031
EFFN     16031.000000
CKSUM    216812631
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -11.3255 0.71881
ECMLC    0.65360    -8.44316     0.96841     1600000      563228  0.002131
ECMGC    0.27502   -40.60883   -26.81784     1600000       17753  0.022531
ECMLI    0.63636    -8.38822     1.20496     1600000      537571  0.002232
ECMGI    0.27613   -39.08567   -25.48854     1600000       17087  0.023410
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1218  2563 -18.894 -20.140  -0.847  -1.172                 
    IL     1     1 2     1     4    30    52  1222  2566  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    31    52  1222  2567  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    277 - A - -
    MR     3     2 3     5     3    32    52  1221  2566 -19.456  -0.000 -17.774                          2.000 -15.081 -14.358 -14.411 
     D     4     2 3     5     3    28    48  1218  2563 -20.225 -15.403  -0.000                         
    IR     5     5 3     5     3    31    52  1221  2566  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    276 - C - -
    MR     6     5 3     8     3    31    51  1220  2565 -19.456  -0.000 -17.774                         -16.251  2.000 -17.542 -14.289 
     D     7     5 3     8     3    28    48  1218  2563 -20.225 -15.403  -0.000                         
    IR     8     8 3     8     3    31    51  1220  2565  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    275 - C - -
    MR     9     8 3    11     3    30    50  1219  2564 -19.456  -0.000 -17.774                         -16.251  2.000 -17.542 -14.289 
     D    10     8 3    11     3    28    48  1218  2563 -20.225  -0.000 -12.316                         
    IR    11    11 3    11     3    24    44  1219  2563  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    274 - A - -
    MR    12    11 3    14     5    29    49  1218  2563  -7.041  -0.027 -18.758  -6.521 -19.862          1.703 -2.782 -5.344 -0.800 
     D    13    11 3    14     5    20    40  1209  2554  -6.517  -1.871  -4.143  -5.574  -0.648         
    IR    14    14 3    14     5    28    48  1218  2563  -8.723  -0.005 -12.234 -10.402 -11.507          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    272 G C - -
    MP    15    14 3    19     6    28    48  1217  2562 -19.855 -19.794  -0.000 -15.252 -18.850 -19.245 -17.832 -12.916 -20.393 -4.566 -19.440 -13.229  0.255 -19.742 -14.172  3.845 -14.231 -1.359 -14.084 -13.311 -16.174 -19.625 
    ML    16    14 3    19     6    23    43  1214  2559  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    27    47  1215  2559 -14.766 -13.495  -0.378 -13.473  -2.120 -11.687 -8.457  1.946 -8.847 -2.815 
     D    18    14 3    19     6    20    39  1204  2549 -10.624  -9.322  -5.119  -5.801  -5.819  -0.099 
    IL    19    19 5    19     6    24    44  1215  2560  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    24    44  1215  2560  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    271 G C - -
    MP    21    20 6    25     6    26    46  1215  2560 -19.867 -19.806  -0.012  -9.347 -11.976  -7.259 -16.094 -1.976 -16.259  0.043 -17.188 -13.179  1.579 -16.838 -5.762  3.543 -15.574 -8.215 -5.541 -5.247 -14.200 -15.231 
    ML    22    20 6    25     6    24    44  1213  2557  -6.861  -7.207  -0.715  -1.616  -7.057  -4.586 -0.081 -0.990  0.850 -0.419 
    MR    23    20 6    25     6    26    45  1210  2555 -12.658 -11.387  -3.470 -11.365  -0.140  -9.579 -6.061  1.889 -6.567 -1.879 
     D    24    20 6    25     6    20    39  1204  2548 -10.624  -9.322  -5.119  -5.801  -5.819  -0.099 
    IL    25    25 5    25     6    24    44  1214  2558  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    24    44  1213  2558  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    270 G U - -
    MP    27    26 6    31     6    30    49  1213  2558  -5.384 -19.795  -0.044  -7.507 -11.906 -19.246 -15.515 -14.491 -15.252 -0.060 -4.682 -15.812  0.279 -8.172 -15.429  1.345 -15.707  3.463 -3.160 -15.414 -3.687 -5.019 
    ML    28    26 6    31     6    26    45  1210  2555 -11.433 -11.779  -5.262  -0.042 -11.629  -9.158 -5.474 -7.181  1.984 -6.223 
    MR    29    26 6    31     6    25    44  1209  2553 -12.676 -11.405  -3.761 -11.384  -0.114  -9.597 -4.624 -4.465 -1.914  1.867 
     D    30    26 6    31     6    20    39  1203  2548 -16.653 -15.351 -11.148 -11.830 -11.848  -0.001 
    IL    31    31 5    31     6    26    45  1211  2555  -0.582 -13.095 -11.013 -14.751  -1.595 -15.187  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    24    44  1212  2556  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      8    269 G C - -
    MP    33    32 6    37     6    28    47  1211  2556 -19.812  -7.395  -0.009 -18.528 -18.808 -19.203 -15.084 -3.196 -15.026 -0.834 -16.069 -15.063  0.162 -15.612 -14.915  3.749 -15.175 -6.194 -0.427 -14.649 -6.570 -13.965 
    ML    34    32 6    37     6    25    44  1209  2554 -13.585 -13.931  -1.014  -0.988 -13.781 -11.310 -7.225 -8.453  1.662 -0.276 
    MR    35    32 6    37     6    24    43  1208  2552 -16.034 -14.763  -5.496 -14.741  -0.033 -12.955 -11.019  1.999 -11.724 -9.622 
     D    36    32 6    37     6    20    39  1203  2548 -16.653 -15.351  -9.078 -11.830 -11.848  -0.004 
    IL    37    37 5    37     6    24    44  1210  2555  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    27    46  1210  2555  -8.316  -0.007 -11.828  -9.995 -11.101          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      9    267 c g - -
    MP    39    38 6    43     6    26    45  1209  2554  -6.881  -7.312  -0.022 -18.534 -12.569 -19.209 -7.038 -13.647 -14.068  0.881 -11.132 -7.031  2.969 -11.494 -13.977  1.927 -2.691  0.447 -0.793 -14.213 -1.279 -8.545 
    ML    40    38 6    43     6    24    43  1207  2552 -12.606 -12.952  -7.666  -0.009 -12.802 -10.331 -7.395  1.992 -7.866 -6.425 
    MR    41    38 6    43     6    23    42  1206  2551 -16.003 -14.732 -10.641 -14.710  -0.001 -12.924 -10.504 -10.565  1.256  0.688 
     D    42    38 6    43     6    20    39  1203  2548 -16.651 -15.349 -11.146 -11.828 -11.846  -0.001 
    IL    43    43 5    43     6    25    44  1208  2553  -9.714  -9.977  -0.004 -11.632 -12.408 -12.068  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    25    44  1208  2553  -8.404  -0.007 -11.915 -10.083 -11.189          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]     11    265 u a - -
    MP    45    44 6    49     6    24    43  1207  2552  -5.184 -19.757  -0.041 -11.665 -18.813 -19.208 -14.114 -13.815 -6.681  0.578 -10.892 -14.958  2.260 -13.633 -13.972  1.372 -14.486 -7.569  2.751 -2.692 -2.390 -4.765 
    ML    46    44 6    49     6    23    42  1206  2551 -12.606 -12.952  -0.011  -7.361 -12.802 -10.331 -7.395  1.992 -7.866 -6.425 
    MR    47    44 6    49     6    22    41  1205  2550 -16.012 -14.741  -0.699 -14.719  -1.382 -12.932  0.851 -4.248 -0.789  0.646 
     D    48    44 6    49     6    20    39  1203  2548 -16.651 -15.349  -4.939 -11.828 -11.846  -0.049 
    IL    49    49 5    49     6    23    42  1206  2551 -11.404 -11.666  -0.001 -13.322 -14.098 -13.758  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    23    42  1206  2551  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     13    264 a u - -
    MP    51    50 6    55     4    22    41  1205  2550 -19.077 -19.284  -0.001 -11.216                 -4.141 -5.331 -12.476  2.631 -14.766 -14.247 -0.284 -7.336 -14.081  2.297 -5.230 -3.485  1.950 -13.505 -11.844 -12.611 
    ML    52    50 6    55     4    21    40  1204  2549  -6.359  -6.541  -0.072  -5.271                  1.911 -3.929 -3.426 -3.622 
    MR    53    50 6    55     4    21    40  1204  2548 -12.658 -11.687  -0.101  -3.902                  1.537  0.104 -7.138 -6.030 
     D    54    50 6    55     4    20    39  1203  2548 -12.026 -11.708  -0.007  -7.978                 
    IL    55    55 5    55     4    21    40  1205  2549  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    21    40  1204  2549  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     14      - U - - -
    ML    57    56 6    59     3    20    39  1203  2548 -20.008  -0.000 -18.662                         -5.037 -13.375 -5.974  1.983 
     D    58    56 6    59     3    19    38  1202  2547 -11.569  -0.024  -5.960                         
    IL    59    59 3    59     3    20    39  1203  2548  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     15      - A - - -
    ML    60    59 3    62     2    19    38  1202  2547  -7.604  -0.007                                  1.793 -5.563 -0.987 -6.892 
     D    61    59 3    62     2    18    37  1201  2546  -8.445  -0.004                                 
    IL    62    62 3    62     2    19    38  1202  2547  -8.298  -0.005                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    18    37  1201  2546                                                 
                                             [ BEGR   46 ]      -      - - - - -
     S    64    63 1    65     3     0     7  1167  2512 -20.010  -0.000 -18.664                         
    IL    65    65 2    65     3     1     7  1169  2514  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]     70      - A - - -
    ML    66    65 2    68     3     1     7  1167  2512 -20.010  -0.055  -4.752                          1.709 -4.154 -0.781 -3.450 
     D    67    65 2    68     3     0     2  1173  2518  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     7  1168  2513  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]     71      - G - - -
    ML    69    68 3    71     3     1     7  1166  2510  -1.854  -0.467 -18.609                         -2.630 -7.162  1.903 -3.445 
     D    70    68 3    71     3     0     2  1176  2521  -1.535  -0.617  -8.438                         
    IL    71    71 3    71     3     1     8  1241  2586  -0.022  -6.047 -21.610                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    162      - G - - -
    ML    72    71 3    74     3     1     6  1078  2418 -20.010  -0.000 -18.664                         -4.027 -3.438  1.894 -2.957 
     D    73    71 3    74     3     0     0  1084  2424  -8.347  -3.860  -0.108                         
    IL    74    74 3    74     3     1     2  1079  2419  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    163      - U - - -
    ML    75    74 3    77     3     1     5  1077  2417 -20.010  -0.000 -18.664                         -0.721 -3.965 -4.930  1.721 
     D    76    74 3    77     3     0     0  1085  2425  -8.347  -0.239  -2.739                         
    IL    77    77 3    77     3     1     1  1083  2423  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    164      - C - - -
    ML    78    77 3    80     5     1     4  1076  2416 -18.943  -0.001 -18.758 -10.017 -19.862         -1.191  1.697 -5.592 -1.739 
     D    79    77 3    80     5     0     0  1122  2461  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL    80    80 3    80     5     1     1  1086  2426  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    165    263 a u - -
    MP    81    80 3    85     6     2     8  1075  2414 -19.869 -19.809  -0.009  -8.549  -8.156 -19.260 -13.215 -4.285 -13.095  2.971 -14.766 -14.250  0.586 -14.338 -14.090  1.752 -14.337  1.332 -0.644 -9.476 -3.697 -11.936 
    ML    82    80 3    85     6     1     1  1087  2426  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1  1174  2513 -11.333 -10.062  -5.971 -10.041  -5.174  -0.068  1.979 -6.060 -5.461 -5.684 
     D    84    80 3    85     6     0     0  1163  2503  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1  1084  2423  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1  1081  2421  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    166    262 g c - -
    MP    87    86 6    91     6     2     9  1073  2412 -19.860 -19.800  -0.000 -18.576 -18.856 -19.251 -13.886 -12.658 -13.733  0.503 -8.363 -14.364  1.103 -8.995 -5.671  2.949 -12.432  0.683  0.939 -13.633 -5.679  0.195 
    ML    88    86 6    91     6     1     2  1072  2412 -12.217 -12.564  -0.014  -6.972 -12.413  -9.943  1.993 -7.650 -6.942 -7.088 
    MR    89    86 6    91     6     1     2  1072  2411 -13.143 -11.872  -7.781 -11.851  -0.009 -10.064  1.994 -8.026 -7.298 -7.433 
     D    90    86 6    91     6     0     0  1175  2515 -13.923 -12.622  -8.419  -9.101  -9.118  -0.010 
    IL    91    91 5    91     6     1     1  1084  2423  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1  1080  2420  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    167    261 c g - -
    MP    93    92 6    97     6     2     7  1071  2410 -19.864  -7.084  -0.011 -18.580 -18.860 -19.255 -13.834 -3.348 -13.653  0.254 -4.338 -12.403  2.913 -12.426 -14.088  2.571 -12.284  0.189 -5.021 -13.509 -6.345 -12.616 
    ML    94    92 6    97     6     1     1  1098  2438  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     6     1     2  1070  2410 -13.143 -11.872  -7.781 -11.851  -0.009 -10.064  1.994 -8.026 -7.298 -7.433 
     D    96    92 6    97     6     0     0  1175  2515 -13.923 -12.622  -8.419  -9.101  -9.118  -0.010 
    IL    97    97 5    97     6     1     1  1081  2420  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     3  1070  2409  -8.675  -0.005 -12.186 -10.354 -11.459          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    168    259 G C - -
    MP    99    98 6   103     6     2     5  1069  2408  -7.594 -19.803  -0.007 -18.580 -18.860 -19.255 -17.690 -4.544 -19.595  0.977 -19.320 -5.570 -13.675 -19.273 -13.096  3.658 -13.125 -0.387 -0.787 -16.047 -16.096 -18.574 
    ML   100    98 6   103     6     1     1  1099  2439  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     2  1069  2409 -13.143 -11.872  -0.014 -11.851  -6.984 -10.064 -6.529 -8.294  1.993 -7.290 
     D   102    98 6   103     6     0     0  1176  2515 -13.923 -12.622  -8.419  -9.101  -9.118  -0.010 
    IL   103   103 5   103     6     1     3  1068  2408  -9.053  -9.316  -0.007 -10.971 -11.747 -11.407  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1  1086  2426  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    170    258 G C - -
    MP   105   104 6   109     4     2     3  1067  2406 -19.099  -7.599  -0.007 -17.720                 -17.848 -14.424 -20.419 -4.146 -19.455 -0.792 -13.728 -19.763 -9.067  3.933 -15.983 -5.680 -3.934 -8.012 -16.189 -19.659 
    ML   106   104 6   109     4     1     1  1100  2439  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1  1150  2489  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0  1176  2516  -9.349  -9.030  -7.046  -0.016                 
    IL   109   109 5   109     4     1     1  1079  2418  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     2  1066  2406  -7.130  -0.012  -9.830                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    171      - U - - -
    ML   111   110 6   113     3     1     1  1065  2404 -20.008  -0.339  -2.254                         -17.227 -15.887 -6.011  1.994 
     D   112   110 6   113     3     0     0  1177  2516 -11.447  -6.960  -0.012                         
    IL   113   113 3   113     3     1     1  1004  2343  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    172      - U - - -
    ML   114   113 3   116     3     1     3   187  1527 -19.669  -0.000 -18.323                         -16.841 -15.529 -5.363  1.991 
     D   115   113 3   116     3     0     0  1177  2517  -0.007 -14.693  -7.745                         
    IL   116   116 3   116     3     1     3  1178  2517  -0.020  -6.194 -21.342                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    250      - C - - -
    ML   117   116 3   119     3     1     3     9    27 -20.008  -0.000 -18.663                         -4.131  1.925 -13.748 -2.790 
     D   118   116 3   119     3     0     0    13    31 -11.447  -6.960  -0.012                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    251      - G - - -
    ML   120   119 3   122     3     1     2     7    25  -7.544  -0.008 -18.663                         -1.262 -14.730  1.838 -7.063 
     D   121   119 3   122     3     0     0    11    29 -11.447  -6.960  -0.012                         
    IL   122   122 3   122     3     1     1     7    25  -7.185  -0.011  -9.885                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    253      - A - - -
    ML   123   122 3   125     3     1     1     6    24 -20.008  -0.000 -18.663                          2.000 -14.694 -14.260 -14.375 
     D   124   122 3   125     3     0     0    11    29 -11.447  -0.026  -5.838                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    254      - u - - -
    ML   126   125 3   128     3     1     1     4     7  -4.684  -0.063  -8.153                          0.153 -1.206 -0.316  0.724 
     D   127   125 3   128     3     0     0     3     6  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1     4     6 -10.023  -0.002 -12.723                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    256      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -5.398  0.396 -2.376  1.303 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     4    16    70   120   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   185     4    16    70   120                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     4    52   102  -0.023 -15.262  -5.973 -18.048                 
                                             [ MATP   18 ]     17     42 G C - -
    MP   136   135 1   140     6     2     6    52   102 -19.848 -19.787  -0.004  -8.420 -18.843 -19.238 -17.826 -8.283 -20.394 -3.450 -19.433 -4.895 -13.706 -19.739 -15.774  3.880 -15.961  0.172 -14.077 -5.554 -16.167 -19.631 
    ML   137   135 1   140     6     1     1    51   101  -6.835  -7.181  -0.732  -1.590  -7.031  -4.561 -0.060 -0.965  0.823 -0.398 
    MR   138   135 1   140     6     1     3    48    98 -15.311 -14.040  -7.763 -14.018  -0.007 -12.232 -9.949  0.720  1.233 -9.132 
     D   139   135 1   140     6     0     0    47    97  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     2    51   101  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     2    51   101  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     18     41 C G - -
    MP   142   141 6   146     6     2     5    50   100 -19.843 -19.783  -0.001 -18.559 -11.222 -19.234 -16.902 -17.184 -16.220 -13.421 -14.570 -16.364  3.832 -15.485 -16.323 -1.474 -5.016 -15.588  0.280 -16.736 -2.722 -15.125 
    ML   143   141 6   146     6     1     2    49    99 -12.323 -12.669  -0.013  -7.078 -12.519 -10.049 -7.073  1.990 -7.534 -6.128 
    MR   144   141 6   146     6     1     2    47    97 -15.306 -14.035  -1.358 -14.013  -0.714 -12.227 -8.581 -10.352  1.998 -9.339 
     D   145   141 6   146     6     0     0    45    95  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     1    49    99  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     2    49    99  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     19     40 U A - -
    MP   148   147 6   152     6     2     4    48    98 -19.856 -19.795  -0.033  -5.487 -11.846 -19.247 -4.272 -6.577 -14.156 -2.822 -0.311 -4.664 -1.144 -13.675 -4.142  0.790 -14.528 -7.875  3.601 -14.339 -0.876 -5.348 
    ML   149   147 6   152     6     1     1    48    98  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   150   147 6   152     6     1     2    43    93 -14.654 -13.383  -9.292 -13.362  -0.003 -11.575  1.998 -9.430 -8.667 -8.780 
     D   151   147 6   152     6     0     0    44    94  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   152   152 5   152     6     1     1    47    98  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     1    47    97  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     20     39 C G - -
    MP   154   153 6   158     4     2     3    46    96 -19.053 -19.260  -0.015  -6.621                 -16.882 -17.164 -4.556 -5.766 -1.228 -5.322  3.778 -1.052 -16.303 -13.372 -3.912 -15.568  0.032 -16.716 -2.540 -5.250 
    ML   155   153 6   158     4     1     2    48    99  -0.004 -12.514  -9.080 -11.243                 -9.048 -10.817  1.999 -9.805 
    MR   156   153 6   158     4     1     1    42    92 -12.717 -11.746  -9.613  -0.002                 -7.984 -9.758  1.997 -8.745 
     D   157   153 6   158     4     0     0    43    93  -4.568  -4.250  -2.265  -0.520                 
    IL   158   158 5   158     4     1     3    47    98 -10.470  -0.003  -9.901 -13.639                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     2    46    97  -1.001  -1.000 -12.905                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     22      - A - - -
    ML   160   159 6   162     3     1     3    44    94 -19.980  -0.000 -18.635                          1.959 -5.923 -5.923 -3.656 
     D   161   159 6   162     3     0     0    41    91 -15.799  -1.062  -0.941                         
    IL   162   162 3   162     3     1     1    44    95  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     23      - G - - -
    ML   163   162 3   165     3     1     2    43    93 -19.995  -0.004  -8.662                         -1.067 -5.841  1.714 -2.150 
     D   164   162 3   165     3     0     0    24    74 -14.859 -10.372  -0.001                         
    IL   165   165 3   165     3     1     1    43    94  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     24      - C - - -
    ML   166   165 3   168     3     1     1    42    92 -19.991  -0.483  -1.813                         -1.425  1.013 -3.654  0.613 
     D   167   165 3   168     3     0     0    22    72 -15.160 -10.673  -0.001                         
    IL   168   168 3   168     3     1     1    43    93  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     25      - U - - -
    ML   169   168 3   171     3     1     2    42    92  -4.158  -0.083 -18.162                         -3.335 -2.472 -13.238  1.896 
     D   170   168 3   171     3     0     0    12    62 -19.662  -0.012  -6.902                         
    IL   171   171 3   171     3     1     2    49    99  -0.531  -1.700 -14.445                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     31      - G - - -
    ML   172   171 3   174     3     1     2     9    26 -20.006  -0.000 -18.660                         -5.698 -16.296  1.984 -5.264 
     D   173   171 3   174     3     0     0    11    30 -12.765  -8.278  -0.005                         
    IL   174   174 3   174     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     32      - G - - -
    ML   175   174 3   177     3     1     1     8    25 -20.006  -0.014  -6.741                         -5.511 -16.303  1.992 -15.276 
     D   176   174 3   177     3     0     0    10    29 -12.765  -8.278  -0.005                         
    IL   177   177 3   177     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     33      - g - - -
    ML   178   177 3   180     3     1     1     7    12  -1.710  -0.526 -18.647                         -3.882 -0.025  0.712  0.391 
     D   179   177 3   180     3     0     0     6    11  -0.338  -2.268  -9.414                         
    IL   180   180 3   180     3     1     1     6    11  -5.135  -0.042 -15.762                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     36      - A - - -
    ML   181   180 3   183     2     1     1     1     1       *   0.000                                  1.902 -6.436 -2.032 -7.147 
     D   182   180 3   183     2     0     0     0     0       *   0.000                                 
    IL   183   183 3   183     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    30 ]      -      - - - - -
     E   184   183 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   31 ]      -      - - - - -
     S   185   134 1   186     3     0     2    40    69 -20.010  -0.000 -18.664                         
    IL   186   186 2   186     3     1     1    42    71  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]     43      - G - - -
    ML   187   186 2   189     5     1     2    40    69 -18.943  -0.009  -7.296 -18.970 -19.862          0.021 -15.251  1.567 -5.447 
     D   188   186 2   189     5     0     0    39    68  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   189   189 3   189     5     1     1    40    70  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     44     69 C G - -
    MP   190   189 3   194     6     2     5    39    68 -19.861 -19.801  -0.000 -15.386 -16.252 -19.252 -14.160 -13.861 -4.552  0.744 -2.732 -15.004  3.519 -13.679 -8.135  0.426 -11.196 -5.143  0.242 -14.343 -3.175 -12.737 
    ML   191   189 3   194     6     1     1    35    64 -13.459 -13.805  -8.519  -8.214 -13.655  -0.009 -8.420  1.996 -8.934 -7.350 
    MR   192   189 3   194     6     1     1    38    67  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   193   189 3   194     6     0     0    35    64  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   194   194 5   194     6     1     1    39    68  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1    38    68  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     45     68 C G - -
    MP   196   195 6   200     6     2     3    37    66  -6.377 -19.801  -0.189  -3.176 -18.857 -19.252 -14.390 -14.102 -14.365  0.065 -13.205 -11.074  3.386 -13.872 -14.233 -0.042 -14.729 -4.046  1.363 -14.563 -9.448 -0.162 
    ML   197   195 6   200     6     1     1    36    65  -6.813  -7.159  -0.747  -1.568  -7.009  -4.539  1.041 -0.909 -0.655 -0.369 
    MR   198   195 6   200     6     1     1    36    65  -7.267  -5.996  -1.174  -5.974  -1.108  -4.188  0.149 -0.726  0.504 -0.204 
     D   199   195 6   200     6     0     0    34    63 -16.604 -15.303 -11.100 -11.782 -11.799  -0.002 
    IL   200   200 5   200     6     1     4    36    65 -10.259 -10.521  -8.439 -12.177  -0.007 -12.613  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1    37    66  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     47     67 U A - -
    MP   202   201 6   206     6     2     2    35    64 -19.673 -19.612  -0.571  -4.932 -18.668  -1.766 -12.328 -14.817 -15.527  0.891 -14.727 -16.549  0.109 -15.133 -10.385  1.437 -2.547 -12.249  3.346 -16.128 -12.296 -5.597 
    ML   203   201 6   206     6     1     1    35    64 -17.561 -17.907 -12.622  -7.165 -17.757  -0.010 -14.126 -12.738 -15.716  2.000 
    MR   204   201 6   206     6     1     3    35    64  -0.006 -13.630  -9.539 -13.608  -8.742 -11.822  1.998 -9.661 -8.896 -9.006 
     D   205   201 6   206     6     0     0    34    63 -16.604 -15.303 -11.100 -11.782 -11.799  -0.002 
    IL   206   206 5   206     6     1     4    34    63 -10.259 -10.521  -0.003 -12.177 -12.953 -12.613  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1    34    64  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     49     66 G C - -
    MP   208   207 6   212     6     2     3    33    62 -19.131 -19.070  -0.204 -17.847  -2.920 -18.521 -13.129 -11.829 -12.960 -1.664 -13.741 -13.572  1.724 -2.902 -13.348  3.427 -13.620 -0.742 -0.401 -9.716 -3.347 -4.850 
    ML   209   207 6   212     6     1     2    23    52 -15.655 -16.001  -0.199  -2.958 -15.851 -13.381 -10.509  1.802 -11.064 -0.968 
    MR   210   207 6   212     6     1     1    34    64  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   211   207 6   212     6     0     0    34    63 -22.467 -21.165  -2.669 -17.644 -17.662  -0.247 
    IL   212   212 5   212     6     1     1    32    61  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     5     1     1    32    61  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     50     65 C G - -
    MP   214   213 6   218     4     2     2    17    46 -18.372 -18.579  -0.000 -16.993                 -13.453 -13.154 -13.452  0.869 -5.641 -14.293  3.473 -12.970 -13.310  0.576 -13.823 -1.203 -0.280 -13.635 -1.892 -5.107 
    ML   215   213 6   218     4     1     1    25    54  -9.794  -9.977  -0.007  -8.706                 -8.243 -7.384 -9.300  1.996 
    MR   216   213 6   218     4     1     1    34    63 -15.648  -0.001 -12.544 -11.605                 -10.877 -12.633  2.000 -11.623 
     D   217   213 6   218     4     0     0    34    63  -0.000 -17.323 -15.339 -12.703                 
    IL   218   218 5   218     4     1     1    34    63 -14.295  -0.000 -13.726 -17.464                  0.000  0.000  0.000  0.000 
    IR   219   219 6   219     3     1     1    33    62  -0.908  -1.099 -17.153                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     52      - c - - -
    ML   220   219 6   222     3     1     1    11    30 -20.010  -0.000 -18.664                         -1.028  0.675 -1.509  0.643 
     D   221   219 6   222     3     0     0    18    36  -7.059  -2.572  -0.279                         
    IL   222   222 3   222     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     53      - U - - -
    ML   223   222 3   225     3     1     1    10    29 -20.010  -0.000 -18.664                         -13.545 -1.271 -6.322  1.837 
     D   224   222 3   225     3     0     0    17    35  -7.059  -2.572  -0.279                         
    IL   225   225 3   225     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     54      - u - - -
    ML   226   225 3   228     3     1     1     9    28 -20.010  -0.000 -18.664                         -0.425 -0.833  0.041  0.735 
     D   227   225 3   228     3     0     0    16    34  -7.059  -2.572  -0.279                         
    IL   228   228 3   228     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     55      - c - - -
    ML   229   228 3   231     3     1     1     8    26 -20.010  -0.000 -18.664                         -0.387  0.279  0.022  0.009 
     D   230   228 3   231     3     0     0    15    33  -7.059  -2.572  -0.279                         
    IL   231   231 3   231     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     56      - u - - -
    ML   232   231 3   234     3     1     1     6    25 -20.010  -0.000 -18.664                         -0.199  0.068 -0.286  0.334 
     D   233   231 3   234     3     0     0    14    32  -7.059  -2.572  -0.279                         
    IL   234   234 3   234     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     57      - A - - -
    ML   235   234 3   237     3     1     1     5    23 -20.010  -0.000 -18.664                          1.700 -6.545 -0.512 -4.655 
     D   236   234 3   237     3     0     0    13    31  -7.059  -2.572  -0.279                         
    IL   237   237 3   237     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     58      - c - - -
    ML   238   237 3   240     2     1     1     1     1       *   0.000                                 -0.220  0.709 -0.751 -0.132 
     D   239   237 3   240     2     0     0     0     0       *   0.000                                 
    IL   240   240 3   240     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    45 ]      -      - - - - -
     E   241   240 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Ala
ACC   bact-Ala-r2-022416
LENG  76
MAXL  1172
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 04:10:07 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ala-r2-022416.sto
NSEQ  16031
EFFN  12.173351
CKSUM 216812631
STATS LOCAL MSV       -8.6986  0.71881
STATS LOCAL VITERBI   -9.5379  0.71881
STATS LOCAL FORWARD   -3.6933  0.71881
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52445  1.34886  1.22737  1.47115
          1.38629  1.38629  1.38629  1.38629
          0.01428  4.94903  4.94903  1.46634  0.26236  0.00000        *
      1   3.23134  2.78220  0.12755  3.99854      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01428  4.94903  4.94903  1.46634  0.26236  1.09861  0.40547
      2   1.96208  1.90913  0.43070  2.79410      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02001  4.95617  4.36090  1.46634  0.26236  1.09861  0.40547
      3   2.07746  2.18018  0.38271  2.52920      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03468  3.61992  4.92028  0.90394  0.51915  1.33855  0.30412
      4   2.11899  2.44672  0.34186  2.49103      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03445  4.95054  3.61985  1.46634  0.26236  1.34660  0.30127
      5   1.90781  0.97270  1.20024  1.75785      9 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02193  4.24518  4.91196  0.81628  0.58353  1.89130  0.16355
      6   2.06317  1.17787  1.69338  0.96464     11 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.49723  4.93050  0.42355  1.06340  0.81552  0.58413
      7   1.21289  2.20682  0.97014  1.54374     13 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.01470  4.94447  4.89642  1.46634  0.26236  0.58178  0.81849
      8   3.40030  3.45868  3.91799  0.08852     14 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01416  4.95744  4.95744  1.46634  0.26236  1.02159  0.44632
      9   0.19654  3.74753  2.03540  3.72033     15 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03237  4.47685  3.88835  0.97131  0.47576  1.09861  0.40547
     10   3.48999  4.41269  0.05662  4.38799     17 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01434  4.94479  4.94479  1.46634  0.26236  1.58548  0.22922
     11   3.82142  0.22831  3.06900  1.99688     18 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01470  4.94484  4.89679  1.46634  0.26236  1.03415  0.43932
     12   2.38050  1.64467  1.84160  0.58725     19 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01450  4.94978  4.91815  1.46634  0.26236  1.43807  0.27100
     13   2.76073  0.38004  2.50240  1.76590     20 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.04227  3.65285  4.16885  0.47873  0.96645  1.44567  0.26865
     14   0.06856  3.99185  3.93033  3.56999     22 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01440  4.94113  4.94113  1.46634  0.26236  0.91986  0.50845
     15   1.98717  3.39967  0.28399  2.56711     23 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01639  4.94941  4.69189  1.46634  0.26236  1.45029  0.26723
     16   2.01913  0.79356  2.93784  1.01606     24 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.29348  4.94733  1.39742  1.46634  0.26236  1.51690  0.24768
     17   2.89133  2.64361  3.68421  0.16455     25 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.06528  2.92156  4.67272  1.21538  0.35183  0.06164  2.81705
     18   4.11532  5.32382  0.03377  4.42182     31 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01418  4.95627  4.95627  1.46634  0.26236  1.19202  0.36184
     19   4.19783  5.53821  0.02618  4.97931     32 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01418  4.95627  4.95627  1.46634  0.26236  1.19202  0.36184
     20   2.14153  1.47148  1.09177  1.14784     33 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.31480  1.33551  4.95626  0.08037  2.56102  0.93450  0.49887
     21   0.11147  4.00932  2.68827  3.94591     36 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.03326  3.66163  4.95833  0.47873  0.96645  1.09861  0.40547
     22   1.87322  2.76768  0.37041  2.37391     39 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95833  4.95833  1.46634  0.26236  1.09861  0.40547
     23   0.62467  1.95476  1.55239  2.19625     40 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01661  4.95833  4.66146  1.46634  0.26236  1.09861  0.40547
     24   2.17976  3.18443  0.20253  3.54506     41 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01420  4.95590  4.95330  1.46634  0.26236  0.91079  0.51451
     25   4.32047  0.12065  4.15058  2.46972     42 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09688  0.40633
     26   1.41764  3.85403  0.35087  3.42823     43 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95833  4.95833  1.46634  0.26236  1.09861  0.40547
     27   2.07114  0.60066  1.99931  1.66032     44 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01963  4.95833  4.38906  1.46634  0.26236  1.09861  0.40547
     28   2.26643  0.67680  2.08546  1.33246     45 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01423  4.95293  4.95293  1.46634  0.26236  1.32499  0.30898
     29   1.97673  1.71585  1.63786  0.71893     47 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.40823  4.06107  1.14588  0.68337  0.70302  1.32593  0.30864
     30   2.01192  1.68959  0.59424  2.04261     49 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.12568  4.58060  2.22699  1.46634  0.26236  0.04281  3.17223
     31   1.97212  0.74378  1.76728  1.53839     50 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01517  4.88907  4.88907  1.46634  0.26236  0.17421  1.83336
     32   1.73114  1.06316  2.17663  1.01025     52 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09948  0.40503
     33   3.46249  2.26138  3.86807  0.17014     53 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09948  0.40503
     34   1.45166  1.81649  1.47482  0.98242     54 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09948  0.40503
     35   1.44651  1.33930  1.48729  1.28520     55 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09948  0.40503
     36   1.37780  1.43944  1.62862  1.15643     56 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09948  0.40503
     37   0.26172  3.72128  1.75540  3.40413     57 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95831  4.95831  1.46634  0.26236  1.09948  0.40503
     38   1.40944  1.09517  1.84361  1.33562     58 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.30507  1.37543  4.58537  0.61912  0.77310  1.09948  0.40503
     39   1.79077  2.00289  0.63470  1.78303     65 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.43286  4.95513  1.06624  1.46634  0.26236  1.23971  0.34174
     40   2.32470  0.65199  1.63490  1.68090     66 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02150  4.54377  4.54377  1.46634  0.26236  0.37375  1.16524
     41   0.82274  1.70902  1.52601  1.81812     67 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.01572  4.85480  4.85231  1.46634  0.26236  0.17754  1.81600
     42   1.59041  2.23314  0.62566  1.87042     68 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01423  4.95292  4.95292  1.46634  0.26236  1.32411  0.30930
     43   1.82306  2.12420  0.55201  1.94388     69 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01423  4.95294  4.95294  1.46634  0.26236  0.75739  0.63279
     44   0.27067  3.19752  1.94946  2.92026     70 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.95833  3.59112  1.46634  0.26236  1.09861  0.40547
     45   2.81402  4.05314  0.12103  3.30613     71 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.29487  1.39352  4.93757  4.17449  0.01550  0.41462  1.08054
     46   2.87694  3.28037  0.15759  2.95881    162 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95826  4.95826  1.46634  0.26236  1.10221  0.40367
     47   1.96839  2.95258  3.43137  0.25390    163 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95826  4.95826  1.46634  0.26236  1.09146  0.40906
     48   2.16869  0.31382  3.63084  2.05161    164 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01498  4.95833  4.84863  1.46634  0.26236  1.09861  0.40547
     49   1.03796  2.19816  0.82051  2.35797    165 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01717  4.95752  4.60574  1.46634  0.26236  1.13653  0.38703
     50   1.90845  1.97216  0.62535  1.72901    166 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01420  4.95455  4.95455  1.46634  0.26236  1.26343  0.33224
     51   2.01627  1.07703  0.85276  2.30253    167 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01420  4.95455  4.95455  1.46634  0.26236  1.26343  0.33224
     52   1.83886  3.06781  0.32535  2.62821    168 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01865  4.47204  4.95455  0.97046  0.47628  0.91166  0.51393
     53   3.73689  3.49955  0.06756  4.48413    170 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01416  4.95752  4.95752  1.46634  0.26236  1.13653  0.38703
     54   3.82099  3.68599  4.13131  0.06512    171 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01416  4.95752  4.95752  1.46634  0.26236  1.13653  0.38703
     55   3.55493  3.43499  3.84875  0.08568    172 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.21226  1.69164  4.95752  4.25799  0.01425  1.13653  0.38703
     56   3.67043  0.09065  4.52926  2.98765    250 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01416  4.95752  4.95752  1.46634  0.26236  1.13653  0.38703
     57   2.32220  4.39307  0.13830  3.97716    251 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01877  4.46014  4.95752  0.95828  0.48378  1.13653  0.38703
     58   0.01896  5.29700  4.89688  5.06715    253 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01416  4.95752  4.95752  1.46634  0.26236  1.02683  0.44339
     59   1.24123  1.93997  1.63398  0.98856    254 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.05121  3.22079  4.60578  0.32103  1.29244  1.09861  0.40547
     60   2.76232  1.20309  2.75752  0.55662    256 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01946  4.47298  4.84566  0.97057  0.47621  0.87788  0.53728
     61   4.55370  0.05414  4.66045  3.42002    258 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01416  4.95752  4.95752  1.46634  0.26236  1.13653  0.38703
     62   2.81481  0.39668  2.88318  1.55315    259 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02048  4.32428  4.95752  0.85356  0.55495  1.13653  0.38703
     63   2.51679  0.99699  1.03022  1.64316    261 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01645  4.95752  4.67925  1.46634  0.26236  1.13653  0.38703
     64   2.08309  0.78287  1.86698  1.33266    262 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01419  4.95526  4.95526  1.46634  0.26236  0.87213  0.54139
     65   2.57522  1.09734  2.06571  0.76921    263 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01985  4.95832  4.37135  1.46634  0.26236  1.09861  0.40547
     66   1.62989  1.04812  2.05977  1.12095    264 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01741  4.95266  4.58631  1.46634  0.26236  1.29979  0.31826
     67   1.08333  1.75699  1.07668  1.90889    265 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01954  4.40135  4.94978  0.91755  0.50999  1.43641  0.27152
     68   2.03087  1.44730  0.86610  1.54654    267 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02222  4.42692  4.60306  0.93774  0.49678  1.43641  0.27152
     69   2.67776  0.37559  2.33373  1.91417    269 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01433  4.94683  4.94400  1.46634  0.26236  1.02673  0.44344
     70   2.77866  1.30340  2.05876  0.61867    270 U - - )
          1.38629  1.38629  1.38629  1.38629
          0.01427  4.95145  4.94871  1.46634  0.26236  0.70124  0.68512
     71   3.04263  0.46259  1.83867  1.81026    271 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01415  4.95826  4.95826  1.46634  0.26236  1.09678  0.40638
     72   4.10054  0.16350  2.72898  2.67387    272 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02068  4.30909  4.95828  0.84200  0.56360  1.09861  0.40547
     73   0.28777  2.72562  3.23608  1.92935    274 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.25242  4.71739  1.54110  1.46634  0.26236  1.09861  0.40547
     74   4.32587  0.04795  4.77466  3.68255    275 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02275  4.48771  4.48771  1.46634  0.26236  3.25647  0.03929
     75   4.32587  0.04795  4.77466  3.68255    276 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02275  4.48771  4.48771  1.46634  0.26236  3.25647  0.03929
     76   0.03870  4.57018  4.19846  4.37514    277 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01144  4.47640        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Arg
ACC      bact-Arg-r2-022416
STATES   245
NODES    66
CLEN     77
W        1194
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 05:01:14 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Arg-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Arg-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Arg-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     19250
EFFN     19250.000000
CKSUM    2433690954
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -10.3116 0.71912
ECMLC    0.58580    -8.87092     1.71969     1600000      593683  0.002021
ECMGC    0.37644   -21.11256   -10.41722     1600000       22417  0.017844
ECMLI    0.55832    -8.58404     2.36695     1600000      542663  0.002211
ECMGI    0.38520   -17.93744    -7.71357     1600000       20532  0.019482
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1194  2533 -19.158 -20.404  -0.824  -1.201                 
    IL     1     1 2     1     4    17    42  1198  2537  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    18    42  1198  2537  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    390 - A - -
    MR     3     2 3     5     3    18    42  1197  2536 -19.743  -0.000 -18.061                          2.000 -15.368 -14.648 -14.698 
     D     4     2 3     5     3    15    38  1194  2533 -20.460 -15.638  -0.000                         
    IR     5     5 3     5     3    18    42  1197  2536  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    389 - C - -
    MR     6     5 3     8     3    17    41  1196  2535 -19.743  -0.000 -18.061                         -16.564  2.000 -17.884 -14.583 
     D     7     5 3     8     3    15    38  1194  2533 -20.460 -15.638  -0.000                         
    IR     8     8 3     8     3    17    41  1196  2535  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    388 - C - -
    MR     9     8 3    11     3    16    40  1195  2534 -19.743  -0.002  -9.210                         -16.564  2.000 -17.884 -14.583 
     D    10     8 3    11     3    15    38  1194  2533 -20.460  -0.005  -8.121                         
    IR    11    11 3    11     3    14    34  1194  2534  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    387 - g - -
    MR    12    11 3    14     5    18    40  1194  2533  -6.997  -0.183 -19.018  -3.171 -20.122          0.742 -2.419  0.863 -1.638 
     D    13    11 3    14     5    12    29  1182  2521 -11.168  -6.523  -8.795 -10.226  -0.021         
    IR    14    14 3    14     5    14    33  1193  2532  -9.023  -0.189 -12.534 -10.702  -3.056          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    385 G C - -
    MP    15    14 3    19     6    23    42  1194  2533 -19.960 -19.899  -0.000 -18.675 -18.955 -19.350 -15.053 -13.555 -14.956 -0.689 -2.848 -15.352  0.054 -15.471 -15.021  3.643 -15.320  0.319 -1.119 -14.794 -13.080 -13.871 
    ML    16    14 3    19     6    14    34  1190  2530  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    19    36  1188  2527 -18.370 -17.099  -3.933 -17.077  -0.098 -15.291 -10.030 -0.354 -2.449  1.601 
     D    18    14 3    19     6    12    29  1182  2521 -15.987 -14.686 -10.483 -11.165 -11.182  -0.002 
    IL    19    19 5    19     6    15    35  1192  2531  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    15    36  1192  2531  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    384 C G - -
    MP    21    20 6    25     6    21    40  1192  2531 -19.971  -6.588  -0.017 -18.687  -9.281 -19.362 -14.265 -8.418 -14.264  0.477 -10.489 -4.598  3.213 -6.064 -14.126  1.502 -4.025 -0.989  0.482 -10.758 -1.061 -12.844 
    ML    22    20 6    25     6    14    33  1189  2528  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    23    20 6    25     6    18    35  1187  2526 -18.273 -17.002 -12.911 -16.980  -0.000 -15.194 -1.205  1.602 -0.915 -10.671 
     D    24    20 6    25     6    12    29  1182  2521 -15.987 -14.686  -1.872 -11.165 -11.182  -0.462 
    IL    25    25 5    25     6    14    35  1190  2529  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    18    39  1191  2530  -9.271  -0.004 -12.782 -10.950 -12.055          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    382 g c - -
    MP    27    26 6    31     6    20    38  1190  2529 -19.971 -19.910  -0.031 -15.888  -5.574 -19.361 -13.941 -2.259 -13.763  1.563 -14.803 -14.362  1.773 -14.423 -10.025  2.956 -8.200 -1.877 -0.867 -13.622 -0.287 -6.276 
    ML    28    26 6    31     6    14    33  1187  2526  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    29    26 6    31     6    17    34  1186  2525 -18.293 -17.022  -4.757 -17.000  -0.054 -15.213 -7.313  1.836 -1.240 -10.601 
     D    30    26 6    31     6    12    28  1179  2518 -15.529 -14.227 -10.024 -10.706 -10.723  -0.003 
    IL    31    31 5    31     6    14    34  1188  2528  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    15    35  1188  2527  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    381 C G - -
    MP    33    32 6    37     6    19    37  1188  2527 -19.946 -19.886  -0.040 -18.662  -5.210 -19.337 -9.863 -13.943 -9.441  1.108 -8.679 -15.086  3.082 -13.761 -14.100  0.936 -10.135 -3.173  1.098 -14.425 -0.456 -1.072 
    ML    34    32 6    37     6    14    33  1185  2524  -6.683  -7.029  -1.743  -0.671  -6.879  -4.408 -0.050  0.452 -0.750  0.100 
    MR    35    32 6    37     6    16    33  1184  2524 -18.484 -17.213  -6.216 -17.191  -0.020 -15.405 -11.772 -5.734  1.993 -12.479 
     D    36    32 6    37     6    12    28  1179  2518 -15.529 -14.227 -10.024 -10.706 -10.723  -0.003 
    IL    37    37 5    37     6    14    34  1187  2526  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    15    34  1186  2526  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      5    380 c g - -
    MP    39    38 6    43     6    17    35  1186  2525 -19.910  -4.858  -0.136 -18.625  -4.181 -12.979 -14.201 -9.571 -5.035  0.419 -2.908 -15.038  2.939 -13.730 -14.064  1.868 -11.531 -2.275  0.051 -9.572  0.940 -5.737 
    ML    40    38 6    43     6    14    33  1184  2523  -6.683  -7.029  -0.842  -1.437  -6.879  -4.408 -0.075 -0.440 -0.683  0.758 
    MR    41    38 6    43     6    15    32  1183  2523 -18.728 -17.457  -0.851 -17.435  -1.166 -15.649 -13.459  1.537  0.133 -12.212 
     D    42    38 6    43     6    12    28  1179  2518 -15.529 -14.227 -10.024 -10.706 -10.723  -0.003 
    IL    43    43 5    43     6    14    33  1185  2524  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    18    34  1185  2524 -10.931  -0.001 -14.442 -12.610 -13.716          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      6    378 c g - -
    MP    45    44 6    49     6    17    33  1184  2523  -3.550 -19.901  -0.137 -18.677  -7.597 -19.352 -4.386 -13.853 -14.123  0.206 -2.508 -11.478  2.970 -4.039 -14.001  0.512 -2.161 -4.878  1.825 -0.234 -0.715 -4.705 
    ML    46    44 6    49     6    14    31  1182  2521  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    14    30  1181  2520 -18.366 -17.095  -5.653 -17.073  -0.029 -15.287 -11.715 -7.954  1.888 -1.764 
     D    48    44 6    49     6    12    28  1179  2518 -15.587 -14.285  -5.728 -10.765 -10.782  -0.029 
    IL    49    49 5    49     6    16    32  1183  2522  -3.075 -13.625  -0.183 -15.280 -16.056 -15.716  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    14    32  1183  2522  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      9    377 G C - -
    MP    51    50 6    55     4    15    31  1182  2521  -5.657 -19.395  -0.029 -11.987                 -11.519 -5.851 -13.739  1.296 -14.870 -8.831 -2.954 -14.430 -4.710  3.490 -14.424 -2.559  0.826 -11.324 -2.485 -9.485 
    ML    52    50 6    55     4    14    30  1181  2520  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    13    29  1180  2519 -16.423 -15.452 -13.320  -0.000                 -1.043  1.813 -12.788 -11.502 
     D    54    50 6    55     4    12    28  1179  2518 -10.984 -10.665  -1.348  -0.723                 
    IL    55    55 5    55     4    15    31  1183  2522  -0.550 -12.741  -1.658 -15.226                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    14    30  1181  2520  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     14      - U - - -
    ML    57    56 6    59     3    13    29  1180  2519 -20.098  -0.021  -6.080                         -6.903 -7.057 -2.999  1.948 
     D    58    56 6    59     3    12    28  1179  2518 -18.567  -0.028  -5.691                         
    IL    59    59 3    59     3    13    29  1180  2519  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     15      - A - - -
    ML    60    59 3    62     2    12    28  1179  2518 -20.908  -0.000                                  1.693 -4.833 -0.708 -3.061 
     D    61    59 3    62     2    11    27  1178  2517 -13.914  -0.000                                 
    IL    62    62 3    62     2    12    28  1179  2518  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    11    27  1178  2517                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     0     2   315   682 -20.274  -0.069  -4.411                         
    IL    65    65 2    65     3     1     3   317   684  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    284      - a - - -
    ML    66    65 2    68     3     1     3   314   681 -20.204  -0.359  -2.183                          0.800 -0.526 -0.187 -0.543 
     D    67    65 2    68     3     0     2   326   693 -17.283 -12.796  -0.000                         
    IL    68    68 3    68     3     1     3   312   678  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    285      - G - - -
    ML    69    68 3    71     3     1     3   307   674  -2.498  -0.282 -10.925                         -2.129 -3.235  1.784 -2.173 
     D    70    68 3    71     3     0     2   326   693  -1.059  -1.054  -4.701                         
    IL    71    71 3    71     3     1     3   341   707  -0.073  -4.368 -10.752                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    350      - G - - -
    ML    72    71 3    74     3     1     2    35    61 -20.255  -0.135  -3.484                         -2.026 -7.233  1.888 -4.413 
     D    73    71 3    74     3     0     1    33    60 -15.457 -10.970  -0.001                         
    IL    74    74 3    74     3     1     2    37    62  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    351      - U - - -
    ML    75    74 3    77     3     1     5    34    60 -20.120  -0.000 -18.774                         -0.377 -1.473 -2.859  1.450 
     D    76    74 3    77     3     0     1    33    60 -18.391  -0.200  -2.951                         
    IL    77    77 3    77     3     1     2    36    62  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    352      - C - - -
    ML    78    77 3    80     5     1     5    33    59 -19.188  -0.000 -19.003 -19.215 -20.107         -5.559  1.548 -4.540  0.016 
     D    79    77 3    80     5     0     1    34    61 -13.399  -9.243 -12.660  -0.003 -10.948         
    IL    80    80 3    80     5     1     1    33    60  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    353    376 G C - -
    MP    81    80 3    85     6     2     5    32    58 -20.116 -20.055  -0.000 -18.831 -19.111 -19.506 -14.079 -10.452 -13.897  1.421 -15.028 -10.946 -0.773 -14.587 -14.335  3.217 -5.705  1.420 -0.666 -11.617 -7.542 -3.231 
    ML    82    80 3    85     6     1     1    31    57  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    34    61 -15.295 -14.024  -9.933 -14.002  -0.178  -3.122 -0.984 -1.124 -7.515  1.599 
     D    84    80 3    85     6     0     0    30    56  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1    32    59  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    32    59  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    354    375 C G - -
    MP    87    86 6    91     6     2     4    30    56 -20.116 -20.055  -0.000 -13.797 -19.111 -19.506 -14.411 -3.618 -14.411 -0.716 -8.565 -15.255  3.264 -10.441 -11.546  0.537 -8.432  0.976  0.208 -7.753  0.101 -4.483 
    ML    88    86 6    91     6     1     1    29    56  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     2    34    60 -15.119  -0.408  -9.757 -13.827  -2.030 -12.040 -7.940 -7.672 -0.807  1.774 
     D    90    86 6    91     6     0     0    23    49 -14.810 -13.509  -9.306  -9.988 -10.005  -0.005 
    IL    91    91 5    91     6     1     1    32    58  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     2    33    60  -1.004  -8.271 -13.694  -1.006 -12.968          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    355    372 A U - -
    MP    93    92 6    97     6     2     5    28    54 -20.115 -20.055  -0.000 -18.831 -15.356 -19.506 -6.417 -5.508 -13.910  3.065 -14.933 -14.510  0.431 -14.564 -14.334  1.803 -14.587 -0.622  1.043 -11.772 -4.480 -8.528 
    ML    94    92 6    97     6     1     1    26    53  -7.768  -8.114  -0.529  -1.875  -7.964  -5.494 -0.162 -1.542  1.163 -0.934 
    MR    95    92 6    97     6     1     2    25    52 -15.119 -13.848  -9.757 -13.827  -0.002 -12.040  1.852 -8.364 -8.655 -1.378 
     D    96    92 6    97     6     0     0    22    49 -14.810 -13.509  -9.306  -9.988 -10.005  -0.005 
    IL    97    97 5    97     6     1     1    27    54  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    27    54  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    356    371 G C - -
    MP    99    98 6   103     6     2     4    26    52  -7.948 -20.055  -0.006 -18.831 -19.111 -19.506 -14.093 -4.288 -13.912  1.035 -15.044 -14.508 -1.160 -14.600 -14.347  3.731 -14.594 -3.023 -4.464 -10.072 -8.364 -10.796 
    ML   100    98 6   103     6     1     1    25    51  -6.609  -6.955  -0.903  -1.364  -6.805  -4.335  0.116 -0.761  0.560 -0.230 
    MR   101    98 6   103     6     1     2    24    51 -15.122 -13.851  -8.370 -13.829  -0.005 -12.043 -8.446 -1.346  1.849 -9.071 
     D   102    98 6   103     6     0     0    22    49 -14.810 -13.509  -9.306  -9.988 -10.005  -0.005 
    IL   103   103 5   103     6     1     2    25    51  -8.952  -9.215  -0.007 -10.870 -11.646 -11.306  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    25    52  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    358    370 G C - -
    MP   105   104 6   109     4     2     3    24    50 -19.346  -7.968  -0.006 -17.967                 -17.354 -14.706 -18.211 -4.811 -19.312 -16.181 -13.971 -5.525 -6.218  3.992 -16.308 -10.026 -5.653 -16.520 -16.252 -16.883 
    ML   106   104 6   109     4     1     1    23    50  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    23    50 -13.145 -12.174 -10.041  -0.002                 -7.820 -7.569 -1.339  1.846 
     D   108   104 6   109     4     0     0    22    49 -10.234  -9.916  -7.931  -0.009                 
    IL   109   109 5   109     4     1     1    24    51  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     2    23    49  -7.010  -0.013  -9.710                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    359      - U - - -
    ML   111   110 6   113     3     1     1    22    48  -7.731  -0.048  -5.161                         -15.155 -5.954 -7.472  1.992 
     D   112   110 6   113     3     0     0    22    49 -15.441  -0.135  -3.489                         
    IL   113   113 3   113     3     1     1    17    44  -7.242  -0.011  -9.942                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    361      - U - - -
    ML   114   113 3   116     3     1     2    11    37 -20.232  -0.000 -18.886                         -14.795 -7.292 -3.344  1.962 
     D   115   113 3   116     3     0     0    26    52 -16.572  -1.762  -0.504                         
    IL   116   116 3   116     3     1     1    25    52  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    362      - C - - -
    ML   117   116 3   119     3     1     2     9    35 -20.244  -0.000 -18.898                         -5.266  1.964 -5.291 -4.444 
     D   118   116 3   119     3     0     0    26    53  -1.319 -11.582  -0.740                         
    IL   119   119 3   119     3     1     1    28    54  -1.002  -0.999 -11.732                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    365      - G - - -
    ML   120   119 3   122     3     1     2     8    26 -20.256  -0.000 -18.910                         -0.994 -5.745  1.791 -5.742 
     D   121   119 3   122     3     0     0     9    28 -15.330 -10.843  -0.001                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    366      - A - - -
    ML   123   122 3   125     3     1     2     6    25 -20.256  -0.000 -18.910                          1.974 -5.747 -4.913 -5.747 
     D   124   122 3   125     3     0     0     8    27 -15.330 -10.843  -0.001                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    367      - A - - -
    ML   126   125 3   128     3     1     1     5    23 -20.256  -0.016  -6.535                          1.059 -1.227 -0.078 -0.882 
     D   127   125 3   128     3     0     0     7    25 -15.330  -0.002  -9.722                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    368      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -6.644 -1.403 -7.370  1.850 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     5    11  1149  2489   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     5    11  1149  2489                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     3   615  1380  -0.210 -18.265  -2.882 -18.312                 
                                             [ MATP   18 ]     16    116 G C - -
    MP   136   135 1   140     6     2     3   582  1347  -7.507 -19.864  -0.107  -3.940 -10.078 -19.315 -16.109 -14.525 -16.334 -4.352 -18.182 -17.377 -3.325 -16.422 -5.603  3.634 -16.250  1.727 -3.788 -8.324 -15.388 -4.848 
    ML   137   135 1   140     6     1     1   650  1415  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     2   677  1442 -18.663 -17.392 -13.301 -17.370  -0.000 -15.584  1.444 -0.161 -4.251 -1.587 
     D   139   135 1   140     6     0     0   665  1430  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     2   548  1313  -9.199  -9.462  -0.006 -11.117 -11.893 -11.553  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1   600  1365  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     18    115 C G - -
    MP   142   141 6   146     6     2     3   546  1311 -19.826  -5.678  -0.054 -18.541  -5.860 -13.301 -16.677 -8.632 -16.084 -4.398 -14.482 -16.289  3.575 -15.375 -16.159 -1.256 -1.989 -15.009  1.685 -16.564 -2.791 -14.951 
    ML   143   141 6   146     6     1     1   671  1436 -16.860 -17.206 -11.921  -2.978 -17.056  -0.196 -3.221 -12.424  1.961 -11.399 
    MR   144   141 6   146     6     1     1   676  1441 -18.671 -17.400 -13.309 -17.379  -0.029  -5.635 -6.384 -3.084  1.221  0.622 
     D   145   141 6   146     6     0     0   669  1434  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     1   581  1346  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     3   526  1291  -0.801  -1.231 -14.771 -12.938 -14.044          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     19    111 U A - -
    MP   148   147 6   152     6     2     4   522  1287  -7.687 -19.740  -0.097  -4.077  -9.930 -19.191 -16.207 -5.579 -6.762 -3.619 -2.526 -16.119 -1.219 -15.125 -4.375  1.218 -16.049 -14.081  3.689 -16.188 -6.570 -10.423 
    ML   149   147 6   152     6     1     2   597  1362 -13.886 -14.232  -8.946  -0.004 -14.082 -11.611 -8.954  1.997 -9.499 -7.824 
    MR   150   147 6   152     6     1     1   675  1440 -18.785 -17.514 -13.423 -17.492  -8.393  -0.004 -0.403 -1.482 -11.107  1.529 
     D   151   147 6   152     6     0     0   675  1440 -19.893 -18.591 -14.388 -15.070 -15.088  -0.000 
    IL   152   152 5   152     6     1     2   506  1271  -8.898  -9.161  -0.007 -10.816 -11.592 -11.253  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     1   552  1317  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     21    110 C G - -
    MP   154   153 6   158     4     2     4   504  1269  -6.309  -9.611  -0.020 -17.562                 -1.405 -14.787 -8.262 -1.222 -6.041 -6.656  3.752 -2.744 -4.552 -10.439 -7.449 -3.554 -1.109 -15.118 -0.267 -3.079 
    ML   155   153 6   158     4     1     2   596  1361  -2.924 -14.070  -0.204 -12.799                 -0.929  1.796 -11.556 -10.359 
    MR   156   153 6   158     4     1     1   439  1204  -9.943  -8.972  -0.633  -1.505                 -5.172  1.960 -4.600 -4.653 
     D   157   153 6   158     4     0     0   675  1440  -0.202  -5.746  -4.411  -3.939                 
    IL   158   158 5   158     4     1     2   679  1445 -13.834  -0.021  -6.143 -17.003                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     2   679  1444  -0.035  -5.423 -11.037                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     23      - A - - -
    ML   160   159 6   162     3     1     2    36    68 -20.249  -0.000 -18.903                          1.696 -1.816 -1.138 -5.494 
     D   161   159 6   162     3     0     0    33    65 -15.835  -3.213  -0.165                         
    IL   162   162 3   162     3     1     1    37    69  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     24      - G - - -
    ML   163   162 3   165     3     1     1    35    67 -20.251  -0.014  -6.646                          0.354 -6.135  1.199 -1.278 
     D   164   162 3   165     3     0     0    32    65 -15.671  -2.559  -0.268                         
    IL   165   165 3   165     3     1     1    36    68  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     25      - C - - -
    ML   166   165 3   168     3     1     1    34    66 -20.241  -0.570  -1.616                         -1.679  1.118 -2.545  0.429 
     D   167   165 3   168     3     0     0    32    64 -16.226 -11.739  -0.000                         
    IL   168   168 3   168     3     1     1    35    68  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     26      - U - - -
    ML   169   168 3   171     3     1     2    33    66  -2.283  -0.332 -18.325                         -1.128 -1.099 -6.196  1.614 
     D   170   168 3   171     3     0     0    32    64 -20.143  -0.075  -4.304                         
    IL   171   171 3   171     3     1     1    34    66  -1.526  -0.700  -4.740                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     31      - G - - -
    ML   172   171 3   174     3     1     1    32    64 -20.237  -0.001  -9.997                         -3.055 -16.447  1.935 -4.154 
     D   173   171 3   174     3     0     0    29    62 -16.374 -11.887  -0.000                         
    IL   174   174 3   174     3     1     1    33    65  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     32      - G - - -
    ML   175   174 3   177     3     1     1    31    63 -20.236  -0.001 -10.783                         -2.710 -16.530  1.944 -15.505 
     D   176   174 3   177     3     0     0    29    62 -16.427  -0.296  -2.432                         
    IL   177   177 3   177     3     1     1    32    64  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     33      - A - - -
    ML   178   177 3   180     3     1     1    30    62  -1.776  -0.847  -2.718                          1.278 -1.469 -6.091  0.261 
     D   179   177 3   180     3     0     0    28    60  -2.496  -9.666  -0.284                         
    IL   180   180 3   180     3     1     1    31    63  -0.817  -1.209 -17.097                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     42      - U - - -
    ML   181   180 3   183     3     1     1     5    23 -20.030  -0.173  -3.145                         -0.355 -2.552 -1.146  1.376 
     D   182   180 3   183     3     0     0     4    23 -19.008  -0.046  -5.009                         
    IL   183   183 3   183     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     43      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.943 -5.859 -2.999 -6.282 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     4  1117  2456 -20.274  -0.004  -8.658                         
    IL   189   189 2   189     3     1     4  1118  2457  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]    117      - a - - -
    ML   190   189 2   192     5     1     4  1117  2456  -3.808  -0.184  -4.407  -9.448 -20.122          0.739 -0.567  0.614 -2.998 
     D   191   189 2   192     5     0     3  1110  2449 -11.011  -0.009 -10.273  -8.648  -8.560         
    IL   192   192 3   192     5     1     5  1114  2453  -0.440  -1.928 -15.806 -17.639 -16.912          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    123    283 c g - -
    MP   193   192 3   197     6     2     3  1110  2449 -20.063 -20.002  -0.141 -13.818  -4.276  -4.586 -8.449 -4.230 -5.076  1.213  0.068 -2.061  2.447 -1.801 -4.443  0.693 -12.056 -0.776  1.480 -1.016 -0.704 -1.241 
    ML   194   192 3   197     6     1     3  1183  2522 -16.600 -16.946 -11.660  -0.001 -16.796 -14.325 -12.410  2.000 -13.260 -10.828 
    MR   195   192 3   197     6     1     4  1104  2443 -12.133 -10.862  -0.028 -10.840  -5.974  -9.054 -5.618 -7.338  1.986 -6.369 
     D   196   192 3   197     6     0     0  1108  2448  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   197   197 5   197     6     1     2  1115  2455  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     2  1115  2454  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    124    282 c g - -
    MP   199   198 6   203     6     2     4  1100  2440 -19.924 -19.863  -0.008  -7.751 -10.682 -19.315 -14.217 -9.550 -14.218 -0.029 -3.616 -11.637  2.771 -9.401 -11.009  0.340 -14.590 -0.429  2.513 -4.658 -1.778 -3.998 
    ML   200   198 6   203     6     1     2  1182  2521 -16.602 -16.948 -10.461  -0.001 -16.798 -14.327 -7.390  1.997 -11.138 -10.044 
    MR   201   198 6   203     6     1     2  1185  2524 -17.199 -15.928 -11.837 -15.906  -0.001 -14.120  0.003 -0.003 -0.004  0.004 
     D   202   198 6   203     6     0     0  1089  2429 -19.501 -18.199 -13.996 -14.678 -14.696  -0.000 
    IL   203   203 5   203     6     1     2  1113  2452  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     2  1112  2452  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    125    281 g c - -
    MP   205   204 6   209     6     2     4  1098  2437 -19.916 -19.856  -0.048  -4.932 -18.912 -19.307 -13.953 -6.116 -2.926  1.770 -7.145 -14.446  1.652 -14.195 -11.958  2.650 -14.428 -1.341  1.269 -8.444 -2.351 -6.105 
    ML   206   204 6   209     6     1     1  1181  2520  -3.671 -17.065  -9.748  -0.120 -16.915 -14.445 -12.558  2.000 -13.424 -10.957 
    MR   207   204 6   209     6     1     1  1184  2523 -17.214 -15.943 -11.852 -15.921  -0.001 -14.135 -4.553  1.984 -10.950 -9.971 
     D   208   204 6   209     6     0     0  1089  2429 -19.501 -18.199  -0.001 -14.678 -14.696 -10.771 
    IL   209   209 5   209     6     1     1  1091  2430  -8.957  -9.220  -0.007 -10.875 -11.651 -11.312  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1  1111  2450  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    127    280 G C - -
    MP   211   210 6   215     6     2     2  1089  2429  -7.793 -19.881  -0.455  -1.912 -18.938 -12.324 -14.200 -9.206 -14.174 -0.221 -0.118 -14.978  2.301 -13.817 -6.308  3.002 -14.588 -5.416 -0.669 -14.303 -0.706 -9.227 
    ML   212   210 6   215     6     1     1  1185  2524 -17.277 -17.623 -12.337  -0.000 -17.473 -15.002 -13.181  1.323  0.583 -11.545 
    MR   213   210 6   215     6     1     1  1183  2522 -17.214 -15.943 -11.852 -15.921  -6.504  -0.016 -4.553  1.984 -10.950 -9.971 
     D   214   210 6   215     6     0     0  1172  2511  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   215   215 5   215     6     1     1   685  2024  -8.934  -9.197  -0.007 -10.852 -11.628 -11.288  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     1   973  2312  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]    129    279 C G - -
    MP   217   216 6   221     4     2     2   242  1581 -18.726 -18.933  -0.000 -12.038                 -13.793 -5.361 -5.984  2.027 -12.659 -14.636  3.078 -3.548 -13.651  0.809 -14.164 -10.606  0.330 -7.436 -3.778 -1.905 
    ML   218   216 6   221     4     1     1  1184  2523  -0.012 -16.575 -13.142  -6.943                 -0.493 -0.694  0.447  0.387 
    MR   219   216 6   221     4     1     1   742  2082  -8.770  -0.089  -5.666  -4.727                 -4.290 -5.830  1.964 -5.023 
     D   220   216 6   221     4     0     0  1183  2522  -0.006 -14.919 -12.935  -8.017                 
    IL   221   221 5   221     4     1     1  1183  2522  -0.020  -6.399 -20.361  -9.108                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     1    90   185  -0.281  -2.546  -7.463                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    257      - C - - -
    ML   223   222 6   225     3     1     1    11    30 -20.185  -0.049  -4.903                         -6.053  1.443 -5.560  0.315 
     D   224   222 6   225     3     0     0    11    29 -17.627 -13.140  -0.000                         
    IL   225   225 3   225     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    258      - U - - -
    ML   226   225 3   228     3     1     1    10    29 -20.136  -0.000 -18.790                         -17.286 -2.363 -18.755  1.928 
     D   227   225 3   228     3     0     0     9    28 -18.237  -2.846  -0.216                         
    IL   228   228 3   228     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    259      - g - - -
    ML   229   228 3   231     3     1     1     9    27 -20.156  -0.000 -18.810                         -0.551 -0.430  0.373  0.357 
     D   230   228 3   231     3     0     0     8    27 -18.021 -13.534  -0.000                         
    IL   231   231 3   231     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    260      - c - - -
    ML   232   231 3   234     3     1     1     8    26 -20.156  -0.000 -18.810                          0.092  0.325 -0.445 -0.079 
     D   233   231 3   234     3     0     0     7    26 -18.021 -13.534  -0.000                         
    IL   234   234 3   234     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    261      - c - - -
    ML   235   234 3   237     3     1     1     6    25 -20.156  -0.000 -18.810                         -0.554  0.584 -0.513  0.162 
     D   236   234 3   237     3     0     0     6    25 -18.021 -13.534  -0.000                         
    IL   237   237 3   237     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    262      - A - - -
    ML   238   237 3   240     3     1     1     5    23 -20.156  -0.019  -6.288                          1.663 -4.497 -0.499 -3.637 
     D   239   237 3   240     3     0     0     5    24 -18.021 -13.534  -0.000                         
    IL   240   240 3   240     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    263      - A - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                  1.420 -1.020 -3.381 -0.443 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Arg
ACC   bact-Arg-r2-022416
LENG  77
MAXL  1183
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 05:01:16 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Arg-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Arg-r2-022416.sto
NSEQ  19250
EFFN  32.829105
CKSUM 2433690954
STATS LOCAL MSV       -8.7038  0.71912
STATS LOCAL VITERBI   -9.4407  0.71912
STATS LOCAL FORWARD   -3.5514  0.71912
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.49179  1.33528  1.27373  1.46033
          1.38629  1.38629  1.38629  1.38629
          0.00605  5.80386  5.80386  1.46634  0.26236  0.00000        *
      1   2.42510  2.49006  0.25784  2.88411      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00605  5.80386  5.80386  1.46634  0.26236  1.09861  0.40547
      2   2.24833  0.66623  1.55971  1.76851      2 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.00751  5.81146  5.40510  1.46634  0.26236  1.09861  0.40547
      3   1.60561  1.67224  0.67381  2.28625      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02594  5.81095  3.78911  1.46634  0.26236  1.25315  0.33632
      4   1.97508  0.73856  1.93217  1.43291      4 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.03180  5.79526  3.56641  1.46634  0.26236  2.03725  0.13971
      5   2.26530  0.81093  1.47116  1.50463      5 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.05946  5.77146  2.90745  1.46634  0.26236  2.25749  0.11050
      6   2.08909  0.87427  1.92208  1.16241      6 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.09500  2.49149  4.84900  0.18690  1.76917  2.94274  0.05416
      7   1.76293  3.30474  0.40169  2.09915      9 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02508  3.83884  5.73045  1.18228  0.36612  3.52117  0.03001
      8   4.05329  3.97322  3.35926  0.07358     14 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02003  5.80343  4.08537  1.46634  0.26236  0.07168  2.67114
      9   0.23504  3.88009  1.90586  3.21595     15 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.14379  5.90302  2.03104  1.46634  0.26236  0.28918  1.38181
     10   3.04091  3.68422  0.10778  3.53143     16 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01223  4.80220  5.53492  0.63366  0.75639  3.91277  0.02019
     11   3.49098  0.44196  2.26094  1.50283     18 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.07726  5.78009  2.64136  1.46634  0.26236  3.91833  0.02007
     12   3.20656  2.18050  1.84642  0.37292     19 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01210  4.85702  5.45967  0.70708  0.67941  0.16607  1.87721
     13   2.45317  0.37107  2.73471  1.83842     21 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02268  3.97689  5.60367  0.26495  1.45777  0.93715  0.49716
     14   0.23226  2.60298  2.18240  3.89038     23 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00549  5.90118  5.90118  1.46634  0.26236  1.68136  0.20594
     15   1.19126  3.87104  0.56950  2.21169     24 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01496  5.90295  4.41336  1.46634  0.26236  1.45737  0.26507
     16   2.33013  0.65698  2.94654  1.10328     25 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.37404  5.89603  1.17345  1.46634  0.26236  2.37294  0.09784
     17   2.15931  2.12009  3.87876  0.29585     26 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.20420  1.71071  5.53000  0.47057  0.97989  0.06805  2.72140
     18   3.40131  5.56552  0.05573  4.07161     31 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01390  5.90113  4.50409  1.46634  0.26236  2.20141  0.11726
     19   3.30811  6.21590  0.04298  5.65988     32 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00607  5.89276  5.71676  1.46634  0.26236  0.32428  1.28392
     20   0.54001  2.27434  3.58506  1.24947     33 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.55087  1.27995  1.92756  0.84177  0.56378  1.51254  0.24891
     21   1.56136  2.62112  2.09440  0.52040     42 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.06223  5.75928  2.86158  1.46634  0.26236  0.06637  2.74546
     22   0.05975  4.47613  3.34351  4.48238     43 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.23856  1.67663  3.67961  3.73290  0.02421  2.12897  0.12665
     23   2.13597  2.97021  0.30501  2.37023    110 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.06456  5.84750  2.81958  1.46634  0.26236  0.11342  2.23283
     24   0.46341  1.90781  2.20347  2.18887    111 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.02165  3.98664  5.86026  0.93452  0.49885  2.47769  0.08767
     25   1.59000  2.90297  0.39389  2.70624    115 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00570  5.86308  5.86308  1.46634  0.26236  0.09230  2.42846
     26   2.48239  0.41909  3.29588  1.50610    116 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00774  5.91751  5.29444  1.46634  0.26236  1.09861  0.40547
     27   0.91568  1.80697  1.00298  2.67625    117 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.07678  2.66121  5.51053  1.34044  0.30345  0.72880  0.65872
     28   1.74118  0.96625  1.78637  1.28514    123 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.09324  5.91617  2.44961  1.46634  0.26236  0.84776  0.55927
     29   2.46235  0.86948  1.96487  1.03445    124 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00643  5.83030  5.66198  1.46634  0.26236  3.52714  0.02983
     30   1.56454  1.53799  0.90299  1.76816    125 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01005  4.95337  5.82976  0.69260  0.69370  0.83446  0.56936
     31   2.44851  1.05242  0.84482  2.00356    127 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00976  5.00270  5.81215  0.69827  0.68805  0.11344  2.23268
     32   1.48769  0.94772  1.73527  1.56003    129 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.41783  1.08962  5.26262  4.28463  0.01387  1.00803  0.45403
     33   3.63695  0.42422  4.17223  1.19083    257 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.09288  5.91486  2.45342  1.46634  0.26236  1.38200  0.28912
     34   4.66996  2.91946  5.17935  0.07146    258 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00591  5.82789  5.82789  1.46634  0.26236  1.85913  0.16938
     35   1.60404  1.67690  1.22314  1.14678    259 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00583  5.84085  5.84085  1.46634  0.26236  3.41498  0.03343
     36   1.29258  1.24643  1.69572  1.36869    260 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.00583  5.84085  5.84085  1.46634  0.26236  3.41498  0.03343
     37   1.62385  1.07726  1.74312  1.24702    261 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.00583  5.84085  5.84085  1.46634  0.26236  3.41498  0.03343
     38   0.25473  3.79189  1.76824  3.45178    262 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00583  5.84085  5.84085  1.46634  0.26236  0.93142  0.50086
     39   0.46186  2.03889  3.05262  1.64775    263 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.29000  1.44948  4.07191  1.78159  0.18437  2.96695  0.05283
     40   1.96828  2.02286  0.73854  1.38544    279 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.02173  5.85794  3.98228  1.46634  0.26236  2.64736  0.07347
     41   2.04102  0.82343  1.09310  2.34337    280 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.05132  5.84416  3.05492  1.46634  0.26236  0.99326  0.46262
     42   1.90337  0.91048  1.56216  1.43162    281 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.00592  5.82831  5.82173  1.46634  0.26236  2.67039  0.07174
     43   1.10449  2.22402  0.86648  1.96601    282 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00588  5.83241  5.83241  1.46634  0.26236  0.80617  0.59161
     44   1.41179  1.79531  1.05066  1.42499    283 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00565  5.87228  5.87228  1.46634  0.26236  2.96695  0.05283
     45   0.89562  1.73234  1.54909  1.59783    284 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.14749  5.87226  2.00757  1.46634  0.26236  0.10861  2.27380
     46   2.51080  3.22620  0.20996  2.68135    285 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.32959  1.28269  5.65847  2.98587  0.05181  0.11610  2.21083
     47   2.71489  4.71169  0.10021  3.90444    350 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09658  5.90783  2.41521  1.46634  0.26236  1.88392  0.16487
     48   1.62620  2.25229  2.90390  0.44106    351 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00597  5.81721  5.81721  1.46634  0.26236  0.18769  1.76536
     49   3.64491  0.35268  3.94982  1.37905    352 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00547  5.90511  5.90511  1.46634  0.26236  2.02552  0.14148
     50   1.71836  2.90446  0.35765  2.70989    353 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00547  5.90511  5.90511  1.46634  0.26236  2.02552  0.14148
     51   2.68827  0.62085  1.56375  1.68651    354 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00547  5.90511  5.90511  1.46634  0.26236  2.02552  0.14148
     52   0.81915  2.32275  1.12542  1.99014    355 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.00549  5.90511  5.89752  1.46634  0.26236  2.02552  0.14148
     53   1.91860  3.12926  0.24735  3.55532    356 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00930  5.03079  5.90509  0.69385  0.69244  2.01893  0.14248
     54   4.29363  5.34586  0.02376  5.28753    358 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00547  5.90511  5.90511  1.46634  0.26236  2.02552  0.14148
     55   4.60618  4.20453  4.92352  0.03272    359 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.03681  4.94085  3.54064  0.64172  0.74736  0.38138  1.14860
     56   4.31892  4.12757  3.55224  0.05985    361 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00555  5.89011  5.89011  1.46634  0.26236  0.65094  0.73722
     57   4.48186  0.03977  4.62342  4.02548    362 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01327  4.56030  5.90603  0.45820  1.00081  1.97959  0.14865
     58   2.06338  4.24506  0.17375  4.00981    365 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00546  5.90603  5.90603  1.46634  0.26236  1.97959  0.14865
     59   0.03317  4.66236  4.34047  4.59040    366 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00546  5.90603  5.90603  1.46634  0.26236  1.97959  0.14865
     60   0.73010  2.09995  1.48564  1.77597    367 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01571  5.90603  4.35359  1.46634  0.26236  0.32331  1.28644
     61   4.09712  2.36180  4.59407  0.12895    368 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01067  5.04159  5.48417  0.69894  0.68739  0.35309  1.21238
     62   5.16530  0.03111  5.42676  3.88625    370 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00542  5.91609  5.91254  1.46634  0.26236  1.26043  0.33342
     63   3.78905  0.27116  2.99866  1.80159    371 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00546  5.91608  5.89635  1.46634  0.26236  1.26144  0.33302
     64   2.05990  1.27129  2.23254  0.72401    372 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01375  4.51350  5.91603  0.86792  0.54443  1.24385  0.34006
     65   2.14473  2.18501  0.51175  1.76622    375 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00541  5.91609  5.91609  1.46634  0.26236  0.83717  0.56728
     66   2.89644  0.58526  2.77291  1.12289    376 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00636  5.91606  5.61382  1.46634  0.26236  1.09861  0.40547
     67   2.21617  0.42871  3.00038  1.66149    377 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.00546  5.91510  5.89874  1.46634  0.26236  1.20982  0.35418
     68   1.49363  1.91932  0.70520  2.00451    378 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.03382  3.48870  5.91066  0.16821  1.86544  1.17880  0.36766
     69   2.12342  1.38020  0.68180  2.09438    380 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00541  5.91515  5.91515  1.46634  0.26236  1.20513  0.35618
     70   1.86976  2.11802  0.57279  1.82250    381 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00541  5.91515  5.91515  1.46634  0.26236  1.20074  0.35807
     71   2.86326  0.67143  1.51888  1.54654    382 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01516  4.46955  5.62947  0.41886  1.07234  1.20381  0.35674
     72   1.99514  1.57018  0.66694  1.94687    384 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00542  5.91427  5.91427  1.46634  0.26236  1.01272  0.45135
     73   2.81112  0.43326  2.48408  1.56990    385 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01194  4.69205  5.91516  0.51113  0.91584  1.20381  0.35674
     74   0.93198  2.74822  0.82824  2.25032    387 g - - :
          1.38629  1.38629  1.38629  1.38629
          0.05808  5.43861  2.95505  1.46634  0.26236  0.91653  0.51066
     75   5.35494  0.01706  5.67606  4.73669    388 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.00915  5.39122  5.39122  1.46634  0.26236  2.63791  0.07420
     76   5.35494  0.01706  5.67606  4.73669    389 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.00915  5.39122  5.39122  1.46634  0.26236  2.63791  0.07420
     77   0.01175  5.80189  5.37362  5.51616    390 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.00459  5.38666        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Asn
ACC      bact-Asn-r2-022416
STATES   242
NODES    65
CLEN     76
W        1236
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 08:14:08 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asn-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asn-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asn-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     9254
EFFN     9254.000000
CKSUM    1085876629
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -9.4386 0.71886
ECMLC    0.61272    -9.04231     1.44176     1600000      739631  0.001622
ECMGC    0.36694   -40.65717   -29.02582     1600000       28551  0.014010
ECMLI    0.57364    -9.46637     1.64575     1600000      703912  0.001705
ECMGI    0.35720   -37.69698   -26.24103     1600000       23944  0.016706
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1236  2607 -18.102 -19.347  -0.900  -1.108                 
    IL     1     1 2     1     4    21    45  1240  2610  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    22    47  1240  2611  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    419 - A - -
    MR     3     2 3     5     3    26    50  1239  2609 -18.610  -0.000 -16.928                          2.000 -14.238 -13.505 -13.569 
     D     4     2 3     5     3    18    41  1236  2606 -19.497 -14.675  -0.000                         
    IR     5     5 3     5     3    22    47  1239  2610  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    418 - C - -
    MR     6     5 3     8     3    25    49  1238  2608 -18.610  -0.000 -16.928                         -15.313  2.000 -16.505 -13.419 
     D     7     5 3     8     3    18    41  1236  2606 -19.497 -14.675  -0.000                         
    IR     8     8 3     8     3    22    47  1238  2609  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    417 - C - -
    MR     9     8 3    11     3    24    48  1237  2607 -18.610  -0.000 -16.928                         -15.313  2.000 -16.505 -13.419 
     D    10     8 3    11     3    18    41  1236  2606 -19.497  -0.013  -6.831                         
    IR    11    11 3    11     3    17    40  1237  2607  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    416 - G - -
    MR    12    11 3    14     5    23    47  1236  2606  -7.795  -0.022 -17.960  -6.545 -19.064         -0.950 -1.491  1.636 -5.801 
     D    13    11 3    14     5    13    36  1225  2596 -10.814  -6.169  -1.849  -9.871  -0.500         
    IR    14    14 3    14     5    21    45  1236  2607  -7.205  -0.015 -10.716  -8.883  -9.989          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    414 U A - -
    MP    15    14 3    19     6    22    46  1235  2606 -19.057 -18.996  -0.002  -9.262 -18.053 -18.448 -4.723 -15.949 -15.318 -5.853 -5.768 -15.553 -2.539 -5.333 -12.713  1.043 -15.555 -3.690  3.759 -15.814 -4.139 -14.179 
    ML    16    14 3    19     6    19    43  1233  2604 -10.264 -10.610  -5.324  -0.046 -10.460  -7.989 -4.423 -4.030 -5.229  1.951 
    MR    17    14 3    19     6    20    43  1229  2600 -13.948 -12.677  -7.911 -12.656  -0.007 -10.869  1.866 -1.580 -6.789 -6.362 
     D    18    14 3    19     6    13    35  1221  2592 -14.703 -13.402  -9.199  -9.881  -9.898  -0.006 
    IL    19    19 5    19     6    17    40  1234  2604  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    17    40  1233  2604  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    413 C G - -
    MP    21    20 6    25     6    20    44  1233  2604 -19.055 -18.994  -0.006 -17.771 -18.050  -7.804 -16.007 -16.228 -6.286 -3.526 -5.162 -15.545  3.468 -14.649 -5.263  2.156 -7.519 -14.500 -3.748 -15.867 -2.032 -14.256 
    ML    22    20 6    25     6    20    44  1232  2603 -11.479 -11.825  -0.023  -6.234 -11.675  -9.204  0.697  1.179 -4.857 -3.632 
    MR    23    20 6    25     6    19    42  1228  2599 -13.946 -12.675  -2.284 -12.653  -0.333 -10.867 -2.967 -8.895  1.951 -7.934 
     D    24    20 6    25     6    13    35  1221  2592 -14.703 -13.402  -9.199  -9.881  -9.898  -0.006 
    IL    25    25 5    25     6    17    40  1232  2602  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    17    40  1232  2602  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    412 C G - -
    MP    27    26 6    31     6    23    45  1231  2602 -19.056 -18.995  -0.031  -5.647  -9.715 -18.446 -13.366 -13.067 -3.180 -2.487 -12.229 -14.206  3.306 -5.229 -13.223  0.690 -12.781 -3.289  1.974 -13.548 -2.718 -11.942 
    ML    28    26 6    31     6    16    40  1228  2599  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    29    26 6    31     6    18    41  1226  2597 -13.619 -12.348  -8.257 -12.327  -0.006 -10.540 -1.288 -2.002  1.698 -3.363 
     D    30    26 6    31     6    13    35  1221  2592 -16.016 -14.714 -10.511 -11.194 -11.211  -0.002 
    IL    31    31 5    31     6    17    40  1230  2600  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    17    40  1230  2600  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    411 c g - -
    MP    33    32 6    37     6    21    44  1229  2600 -19.025 -18.964  -0.002  -9.293 -18.020 -18.415 -13.324 -12.995 -13.320  0.705 -12.210 -14.157  2.506 -12.856 -13.188  2.431 -13.697 -4.719  1.394 -13.495 -0.970 -3.064 
    ML    34    32 6    37     6    18    41  1226  2597 -14.289 -14.635  -9.349  -0.003 -14.485 -12.014 -8.112 -9.885  1.998 -8.873 
    MR    35    32 6    37     6    17    40  1225  2596 -13.804 -12.533  -3.521 -12.511  -0.133 -10.725  1.520 -1.002 -1.496 -1.844 
     D    36    32 6    37     6    13    35  1221  2592 -16.016 -14.714 -10.511 -11.194 -11.211  -0.002 
    IL    37    37 5    37     6    17    40  1228  2599  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    17    40  1228  2598  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      5    410 c g - -
    MP    39    38 6    43     6    19    42  1227  2598 -19.024 -18.963  -0.009  -8.296 -18.019  -8.365 -13.514 -13.208 -13.491  0.683 -12.348 -14.301  2.993 -9.986 -13.362  1.833 -13.859 -6.764 -1.933 -9.649  1.378 -12.083 
    ML    40    38 6    43     6    17    40  1225  2596 -14.397 -14.743  -3.765  -0.111 -14.593 -12.122 -9.604  1.998 -10.192 -8.394 
    MR    41    38 6    43     6    16    39  1224  2595 -13.677 -12.406  -6.833 -12.384  -0.014 -10.598 -6.650 -0.383  1.685 -7.111 
     D    42    38 6    43     6    13    35  1221  2592 -16.016 -14.714 -10.511 -11.194 -11.211  -0.002 
    IL    43    43 5    43     6    17    40  1226  2597  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    17    40  1226  2597  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      6    409 g c - -
    MP    45    44 6    49     6    17    40  1225  2596  -6.942 -18.956  -0.012 -17.733 -18.013 -18.408 -12.974 -6.395 -9.538  1.313 -13.224 -5.421  0.721 -6.848 -13.151  2.629 -5.459 -3.944  1.803 -4.606  1.004 -6.067 
    ML    46    44 6    49     6    16    39  1224  2595 -14.497 -14.843  -0.003  -9.252 -14.693 -12.222  1.998 -9.784 -9.020 -9.128 
    MR    47    44 6    49     6    15    38  1223  2594 -13.669 -12.398  -1.789 -12.376  -0.495 -10.590 -0.721 -0.658  1.320 -1.930 
     D    48    44 6    49     6    13    35  1221  2592 -16.498 -15.196  -1.218 -11.675 -11.692  -0.812 
    IL    49    49 5    49     6    16    39  1224  2595  -8.861  -9.124  -0.008 -10.779 -11.555 -11.215  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    16    38  1224  2595  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      8    408 G C - -
    MP    51    50 6    55     4    15    38  1223  2594 -18.291 -18.498  -0.003  -9.082                 -13.117 -11.746 -12.941  1.446 -14.075 -13.527 -1.306 -13.624 -3.187  3.324 -13.606 -1.228  1.213 -9.138 -11.150 -11.903 
    ML    52    50 6    55     4    14    37  1222  2593  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    14    36  1222  2592 -11.206 -10.235  -0.591  -1.577                  0.412  0.749 -4.623 -0.077 
     D    54    50 6    55     4    12    35  1220  2591 -11.111 -10.792  -6.060  -0.023                 
    IL    55    55 5    55     4    15    37  1223  2593  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    14    37  1223  2593  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]      9      - U - - -
    ML    57    56 6    59     3    13    36  1221  2592 -19.203  -0.001 -10.917                         -4.256 -5.379 -5.055  1.961 
     D    58    56 6    59     3    12    35  1220  2591 -13.943  -0.005  -8.335                         
    IL    59    59 3    59     3    13    36  1222  2592  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     10      - A - - -
    ML    60    59 3    62     2    12    35  1220  2591 -19.873  -0.000                                  1.938 -4.187 -3.350 -5.965 
     D    61    59 3    62     2    11    34  1219  2590  -9.204  -0.002                                 
    IL    62    62 3    62     2    12    35  1220  2591  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    11    34  1219  2590                                                 
                                             [ BEGR   46 ]      -      - - - - -
     S    64    63 1    65     3     0     3   911  2030 -19.217  -0.000 -17.871                         
    IL    65    65 2    65     3     1     1   909  2028  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    288      - A - - -
    ML    66    65 2    68     3     1     3   911  2030 -19.217  -0.005  -8.317                          1.479 -0.881 -1.570 -1.588 
     D    67    65 2    68     3     0     0   842  1961  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     1   906  2025  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    289      - G - - -
    ML    69    68 3    71     3     1     4   910  2030  -2.161  -0.365 -17.867                         -4.022 -4.134  1.657 -0.460 
     D    70    68 3    71     3     0     0   480  1600 -12.338  -0.014  -6.729                         
    IL    71    71 3    71     3     1     8  1000  2120  -0.024  -5.937 -20.383                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    387      - G - - -
    ML    72    71 3    74     3     1     2    26    45 -19.217  -0.000 -14.542                         -5.666 -15.501  1.979 -4.702 
     D    73    71 3    74     3     0     0    31    50  -6.174  -1.687  -0.566                         
    IL    74    74 3    74     3     1     1    36    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    388      - U - - -
    ML    75    74 3    77     3     1     3    25    44 -19.217  -0.000 -17.871                         -1.070 -0.680 -4.836  1.518 
     D    76    74 3    77     3     0     0    30    48  -7.063  -0.672  -1.455                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    389      - C - - -
    ML    78    77 3    80     5     1     3    24    43 -18.150  -0.000 -15.878 -18.178 -19.069         -6.482  1.899 -5.465 -2.076 
     D    79    77 3    80     5     0     0    25    42  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL    80    80 3    80     5     1     1    27    43  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    390    407 G C - -
    MP    81    80 3    85     6     2     3    23    42 -19.078 -19.018  -0.001 -10.313 -18.074 -18.469 -13.413 -9.365 -13.260  2.067 -14.430 -13.889  1.446 -13.904 -6.207  3.145 -6.314 -2.470 -4.933 -13.152 -11.508 -12.202 
    ML    82    80 3    85     6     1     1    24    41  -6.476  -6.822  -1.536  -0.808  -6.672  -4.201  0.749 -0.648 -0.363 -0.146 
    MR    83    80 3    85     6     1     1    25    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    84    80 3    85     6     0     0    23    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1    26    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    25    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    391    406 C G - -
    MP    87    86 6    91     6     2     3    21    40 -19.077 -19.017  -0.002  -9.346 -18.073 -18.468 -13.373 -5.510 -7.447 -1.568 -7.439 -5.284  3.411 -12.893 -11.114  1.540 -13.745 -2.839  0.861 -13.554 -4.903 -3.885 
    ML    88    86 6    91     6     1     1    21    39  -9.786 -10.132  -0.099  -4.119  -9.982  -7.511  1.904 -3.402 -3.591 -3.643 
    MR    89    86 6    91     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    90    86 6    91     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    91    91 5    91     6     1     1    24    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    24    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    392    405 c g - -
    MP    93    92 6    97     6     2     2    19    38 -19.076 -19.016  -0.000 -17.792 -18.072 -18.467 -13.378 -3.789 -8.945  2.255 -12.243 -14.221  2.461 -6.269 -13.236  1.046 -13.749 -10.646  1.750 -13.561 -2.292 -10.641 
    ML    94    92 6    97     6     1     1    21    40 -10.683 -11.029  -0.052  -5.016 -10.879  -8.409 -5.010 -4.569 -5.835  1.967 
    MR    95    92 6    97     6     1     1    24    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    96    92 6    97     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    97    97 5    97     6     1     1    23    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    393    404 G C - -
    MP    99    98 6   103     6     2     2    17    35  -7.968 -19.018  -0.006 -17.794 -18.074 -18.469 -16.922 -8.302 -18.645 -1.747 -17.788 -14.825 -1.100 -18.141 -15.012  3.922 -15.207 -11.593 -4.944 -4.870 -8.108 -17.629 
    ML   100    98 6   103     6     1     1    24    42  -6.476  -6.822  -1.536  -0.808  -6.672  -4.201  0.224 -0.653  0.374 -0.152 
    MR   101    98 6   103     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   102    98 6   103     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   103   103 5   103     6     1     1    18    37  -7.913  -8.176  -0.015  -9.831 -10.607 -10.268  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    22    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    395    403 G C - -
    MP   105   104 6   109     4     2     2    15    33 -18.308 -18.515  -0.000 -16.929                 -17.056 -5.482 -19.616 -11.128 -18.664 -14.782 -12.937 -18.965 -5.168  3.991 -15.192 -5.539 -13.308 -5.536 -15.397 -18.847 
    ML   106   104 6   109     4     1     1    23    42  -3.929  -4.112  -0.440  -2.841                  0.224 -0.653  0.374 -0.152 
    MR   107   104 6   109     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0    22    40  -4.568  -4.250  -2.265  -0.520                 
    IL   109   109 5   109     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    396      - U - - -
    ML   111   110 6   113     3     1     1    12    30 -19.217  -0.000 -17.871                         -6.780 -15.074 -17.862  1.997 
     D   112   110 6   113     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    397      - U - - -
    ML   114   113 3   116     3     1     1    11    29 -19.217  -0.000 -17.871                         -13.831 -7.312 -5.572  1.990 
     D   115   113 3   116     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    398      - C - - -
    ML   117   116 3   119     3     1     1    10    28 -19.217  -0.000 -15.591                         -6.100  1.978 -6.101 -5.028 
     D   118   116 3   119     3     0     0    16    35  -6.174  -1.687  -0.566                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    399      - G - - -
    ML   120   119 3   122     3     1     1     8    27 -19.217  -0.000 -17.871                         -2.722 -5.740  1.930 -5.744 
     D   121   119 3   122     3     0     0    15    34  -6.621  -1.017  -1.013                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    400      - A - - -
    ML   123   122 3   125     3     1     1     7    25 -19.217  -0.000 -17.871                          1.977 -6.098 -4.825 -6.097 
     D   124   122 3   125     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    401      - G - - -
    ML   126   125 3   128     3     1     1     5    24 -19.217  -0.000 -17.871                          0.162 -5.554  1.354 -1.719 
     D   127   125 3   128     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    402      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -5.669  0.176 -7.327  1.508 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     2    12  1145  2516   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   185     2    12  1145  2516                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     3    27    41  -0.031 -17.209  -5.565 -17.256                 
                                             [ MATP   18 ]     11     35 G C - -
    MP   136   135 1   140     6     2     5    27    41 -19.048 -18.987  -0.006  -8.597  -9.126 -18.438 -17.007 -11.774 -19.463 -4.154 -18.602 -6.094 -3.438 -18.888 -6.922  3.955 -12.786 -2.616 -2.642 -12.079 -15.342 -18.675 
    ML   137   135 1   140     6     1     1    26    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     2    23    37 -14.929 -13.658  -9.566 -13.636  -0.003 -11.849 -7.977 -7.837  1.778 -0.833 
     D   139   135 1   140     6     0     0    24    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1    27    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1    27    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     12     34 C G - -
    MP   142   141 6   146     6     2     6    25    39 -19.041  -3.456  -0.141  -9.066 -18.037 -18.432 -4.427 -16.382 -15.417 -12.619 -11.815 -15.561  3.494 -14.683 -6.539 -12.590 -5.058 -14.786  2.212 -15.934 -6.059 -14.323 
    ML   143   141 6   146     6     1     1    22    36 -11.366 -11.712  -6.426  -1.182 -11.562  -0.871  1.987 -6.748 -6.103 -6.288 
    MR   144   141 6   146     6     1     1    22    36 -15.043 -13.772  -4.324 -13.750  -0.400  -2.381 -3.156 -10.059  1.958 -9.054 
     D   145   141 6   146     6     0     0    21    35  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     1    24    39  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     3    24    38 -11.464  -0.001 -14.975 -13.143 -14.248          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     13     32 U A - -
    MP   148   147 6   152     6     2     6    23    37 -19.040  -4.720  -0.056 -17.756 -18.036 -18.431 -8.453 -16.379 -15.416 -2.598 -8.424 -2.957 -2.167 -14.682 -8.449 -3.340 -15.640 -14.780  3.942 -15.933 -8.740 -14.322 
    ML   149   147 6   152     6     1     2    21    35 -11.571 -11.917  -1.397  -0.695 -11.767  -9.297 -6.261  1.983 -6.712 -5.360 
    MR   150   147 6   152     6     1     2    20    35 -14.646 -13.375  -4.725 -13.353  -0.056 -11.567 -2.325  0.800  1.030 -5.862 
     D   151   147 6   152     6     0     0    17    32 -15.690 -14.388 -10.185 -10.868 -10.885  -0.003 
    IL   152   152 5   152     6     1     1    22    37  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     3    22    36 -10.202  -0.002 -13.713 -11.881 -12.987          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     14     30 C G - -
    MP   154   153 6   158     4     2     4    21    35  -3.400 -18.480  -0.144 -16.894                 -16.102 -16.383 -8.451 -12.620 -6.105 -6.202  3.963 -14.685 -2.678 -6.386 -5.913 -14.788 -10.502 -15.936 -2.878 -4.282 
    ML   155   153 6   158     4     1     1    19    33  -8.008  -8.190  -0.023  -6.920                 -5.336 -4.866 -6.173  1.973 
    MR   156   153 6   158     4     1     1    19    33 -12.618 -11.647  -1.102  -0.906                 -7.855  1.715 -0.502 -7.272 
     D   157   153 6   158     4     0     0    17    32 -11.113 -10.794  -8.810  -0.005                 
    IL   158   158 5   158     4     1     3    20    34 -11.741  -0.001 -11.172 -14.910                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     3    19    33 -10.477  -0.001 -13.177                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     16      - A - - -
    ML   160   159 6   162     3     1     3    18    32 -19.196  -0.000 -17.850                          1.969 -6.942 -10.296 -3.695 
     D   161   159 6   162     3     0     0    17    32 -14.556  -0.004  -8.351                         
    IL   162   162 3   162     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     17      - G - - -
    ML   163   162 3   165     3     1     2    17    31 -19.217  -0.000 -17.871                         -0.233 -7.295  1.646 -6.141 
     D   164   162 3   165     3     0     0    18    37  -6.603  -1.036  -0.994                         
    IL   165   165 3   165     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     18      - U - - -
    ML   166   165 3   168     3     1     1    16    30 -19.217  -0.867  -1.147                         -2.957  0.539 -7.161  1.270 
     D   167   165 3   168     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     19      - C - - -
    ML   169   168 3   171     3     1     1    15    30  -4.841  -0.051 -17.005                         -2.766  1.190 -6.231  0.640 
     D   170   168 3   171     3     0     0    10    27 -19.489  -0.023  -5.964                         
    IL   171   171 3   171     3     1     1    17    31  -1.880  -0.458 -11.368                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     23      - G - - -
    ML   172   171 3   174     3     1     1    10    26 -19.207  -0.000 -17.861                         -5.560 -15.499  1.989 -6.763 
     D   173   171 3   174     3     0     0    11    29 -13.528  -9.041  -0.003                         
    IL   174   174 3   174     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     24      - G - - -
    ML   175   174 3   177     3     1     1     9    25 -19.207  -0.000 -17.861                         -6.247 -4.690  1.981 -14.472 
     D   176   174 3   177     3     0     0     9    28 -13.528  -5.614  -0.030                         
    IL   177   177 3   177     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     25      - U - - -
    ML   178   177 3   180     3     1     1     8    15  -4.310  -0.075 -17.861                         -7.230  0.273 -7.571  1.475 
     D   179   177 3   180     3     0     0     4    11 -13.501  -9.014  -0.003                         
    IL   180   180 3   180     3     1     1     8    15  -3.730  -0.113 -12.407                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     28      - A - - -
    ML   181   180 3   183     2     1     1     1     1       *   0.000                                  1.806 -5.449 -1.135 -5.292 
     D   182   180 3   183     2     0     0     0     0       *   0.000                                 
    IL   183   183 3   183     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    30 ]      -      - - - - -
     E   184   183 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   31 ]      -      - - - - -
     S   185   134 1   186     3     0     0  1129  2500  -7.669  -0.012  -8.098                         
    IL   186   186 2   186     3     1     1  1130  2501  -6.292  -0.021  -8.992                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]     37      - g - - -
    ML   187   186 2   189     5     1     1  1129  2500 -18.145  -0.000 -17.960 -18.172 -19.064          0.625 -7.433  0.697 -0.267 
     D   188   186 2   189     5     0     0  1137  2508 -10.523  -0.401  -9.784  -2.075  -8.072         
    IL   189   189 3   189     5     1     1  1131  2502  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     38    287 c g - -
    MP   190   189 3   194     6     2     2  1128  2499  -5.506 -19.016  -0.032 -17.793 -18.073 -18.468 -4.288  0.848 -4.455  1.509 -3.216 -11.467  2.180 -1.819 -5.656 -0.210 -11.251  1.330 -0.751  1.200 -5.776 -5.245 
    ML   191   189 3   194     6     1     1  1130  2501  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   192   189 3   194     6     1     1  1161  2532 -10.459  -9.188  -5.096  -9.166  -0.058  -7.379 -3.939 -3.588 -4.735  1.931 
     D   193   189 3   194     6     0     0  1149  2521  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   194   194 5   194     6     1     1  1159  2530 -10.345 -10.608  -3.316 -12.263  -0.155 -12.699  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1  1131  2502  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     40    286 C G - -
    MP   196   195 6   200     6     2     2  1125  2496 -19.048  -7.914  -0.006 -17.764 -18.044 -18.439 -13.744 -13.467 -13.698 -0.677 -12.515 -14.470  3.186 -13.194 -13.574 -0.960 -11.635 -7.557  2.493 -13.907 -2.977 -12.300 
    ML   197   195 6   200     6     1     1  1127  2498  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   198   195 6   200     6     1     1  1161  2532 -14.900 -13.629  -9.538 -13.608  -0.064  -4.569 -0.044 -0.075 -0.077  0.179 
     D   199   195 6   200     6     0     0  1152  2523  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   200   200 5   200     6     1     1  1128  2499  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1  1124  2495  -7.067  -0.017 -10.578  -8.746  -9.852          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     41    284 c g - -
    MP   202   201 6   206     6     2     2  1123  2494 -19.048 -18.988  -0.000 -17.764 -18.044 -18.439 -16.090 -16.340 -15.418 -2.546 -13.773 -6.116  2.859 -14.686 -15.515  2.779 -15.639 -14.704  0.759 -15.928 -10.609 -14.320 
    ML   203   201 6   206     6     1     1  1122  2493  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   204   201 6   206     6     1     1  1160  2531 -14.839 -13.568  -9.477 -13.546  -0.003 -11.760  0.015 -0.016 -0.018  0.018 
     D   205   201 6   206     6     0     0  1156  2527 -13.029 -11.728  -7.525  -8.207  -8.224  -0.018 
    IL   206   206 5   206     6     1     1  1126  2497  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1  1127  2498  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     42    283 G C - -
    MP   208   207 6   212     6     2     2  1121  2492 -19.048  -3.540  -0.132  -9.453 -18.044 -18.439 -16.928 -13.607 -19.034 -3.924 -18.586 -14.786 -2.223 -18.580 -5.671  3.972 -15.170 -7.072 -13.264 -15.247 -15.346 -18.022 
    ML   209   207 6   212     6     1     1  1114  2485  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   210   207 6   212     6     1     1  1159  2530 -14.839 -13.568  -9.477 -13.546  -0.003 -11.760  0.015 -0.016 -0.018  0.018 
     D   211   207 6   212     6     0     0  1156  2527 -13.029 -11.728  -7.525  -8.207  -8.224  -0.018 
    IL   212   212 5   212     6     1     1  1123  2494  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     5     1     1  1120  2491 -11.386  -0.001 -14.897 -13.065 -14.171          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     43    281 A U - -
    MP   214   213 6   218     4     2     2  1119  2490  -2.745 -18.483  -0.233 -16.897                 -15.428 -14.307 -15.364  3.156 -14.983 -16.583 -3.543 -15.070 -15.075  2.794 -15.557 -11.685 -4.310 -16.263 -6.328 -14.070 
    ML   215   213 6   218     4     1     1  1096  2468  -7.650  -7.833  -0.029  -6.562                  1.975 -5.748 -5.166 -5.406 
    MR   216   213 6   218     4     1     1  1158  2529 -12.864 -11.893  -9.760  -0.002                 -10.564 -9.350 -11.932  1.999 
     D   217   213 6   218     4     0     0  1157  2528  -8.458  -8.139  -6.155  -0.030                 
    IL   218   218 5   218     4     1     1  1188  2559  -0.322  -2.322 -14.152 -17.889                  0.000  0.000  0.000  0.000 
    IR   219   219 6   219     3     1     1  1183  2554  -0.067 -14.948  -4.459                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     49      - C - - -
    ML   220   219 6   222     3     1     1  1093  2464 -18.955  -0.000 -17.609                         -15.102  1.992 -15.765 -5.523 
     D   221   219 6   222     3     0     0  1157  2528 -18.051 -13.564  -0.000                         
    IL   222   222 3   222     3     1     1  1102  2473  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     50      - U - - -
    ML   223   222 3   225     3     1     1  1092  2463 -18.955  -0.000 -17.609                         -13.691 -7.056 -6.994  1.994 
     D   224   222 3   225     3     0     0  1157  2528  -0.192 -13.564  -3.006                         
    IL   225   225 3   225     3     1     1  1167  2538  -0.030  -5.584 -19.418                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     99      - u - - -
    ML   226   225 3   228     3     1     1  1091  2462  -2.065  -0.394 -17.841                         -1.431 -0.466 -0.024  0.942 
     D   227   225 3   228     3     0     0   608  1979 -15.046 -10.559  -0.001                         
    IL   228   228 3   228     3     1     1  1143  2514  -0.029  -5.654 -20.169                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    180      - U - - -
    ML   229   228 3   231     3     1     1  1060  2431 -19.187  -0.000 -17.841                         -1.364 -1.433 -1.433  1.522 
     D   230   228 3   231     3     0     0   578  1950 -15.046 -10.559  -0.001                         
    IL   231   231 3   231     3     1     1  1054  2425  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    181      - U - - -
    ML   232   231 3   234     3     1     1  1059  2430 -19.187  -0.000 -17.841                         -1.432 -0.050 -1.433  1.197 
     D   233   231 3   234     3     0     0   535  1907 -15.046 -10.559  -0.001                         
    IL   234   234 3   234     3     1     1  1053  2424  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    182      - A - - -
    ML   235   234 3   237     3     1     1  1058  2429  -2.796  -0.224 -17.841                          1.862 -1.506 -6.240 -13.313 
     D   236   234 3   237     3     0     0   425  1796 -15.046 -10.559  -0.001                         
    IL   237   237 3   237     3     1     1  1201  2573  -0.019  -6.228 -20.013                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    258      - A - - -
    ML   238   237 3   240     2     1     1     1     1       *   0.000                                  1.992 -5.592 -14.399 -14.428 
     D   239   237 3   240     2     0     0     0     0       *   0.000                                 
    IL   240   240 3   240     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    45 ]      -      - - - - -
     E   241   240 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Asn
ACC   bact-Asn-r2-022416
LENG  76
MAXL  1162
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 08:14:09 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asn-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asn-r2-022416.sto
NSEQ  9254
EFFN  6.323329
CKSUM 1085876629
STATS LOCAL MSV       -8.5803  0.71886
STATS LOCAL VITERBI   -9.3237  0.71886
STATS LOCAL FORWARD   -3.6979  0.71886
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.48849  1.33634  1.28131  1.45327
          1.38629  1.38629  1.38629  1.38629
          0.01921  4.65488  4.65488  1.46634  0.26236  0.00000        *
      1   2.42696  1.66877  1.73773  0.60277      1 U - - (
          1.38629  1.38629  1.38629  1.38629
          0.01921  4.65488  4.65488  1.46634  0.26236  1.09861  0.40547
      2   2.46912  0.70599  1.40349  1.73738      2 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02282  4.65489  4.33941  1.46634  0.26236  1.09861  0.40547
      3   2.28154  0.82316  1.80195  1.22467      3 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02020  4.65310  4.55923  1.46634  0.26236  1.21518  0.35191
      4   1.92052  1.17499  1.24464  1.36022      4 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.01927  4.65217  4.65217  1.46634  0.26236  1.24396  0.34001
      5   1.98380  0.95901  1.50503  1.35802      5 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02165  4.65282  4.43296  1.46634  0.26236  1.23974  0.34173
      6   1.69948  1.62974  1.09669  1.24735      6 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.02572  4.14543  4.65052  0.95202  0.48770  0.92938  0.50219
      7   1.63529  2.38758  0.56524  1.93084      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02067  4.65610  4.51383  1.46634  0.26236  1.17740  0.36828
      8   2.85752  2.86240  3.36426  0.16150      9 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01957  4.65804  4.61612  1.46634  0.26236  0.88781  0.53028
      9   0.13346  3.31014  2.98670  3.27084     10 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03624  4.66530  3.64306  1.46634  0.26236  1.07086  0.41964
     10   2.97091  3.67492  0.11149  3.54416     11 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02077  4.64881  4.51134  1.46634  0.26236  1.56432  0.23475
     11   2.76347  0.59891  2.52300  1.17994     12 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02053  4.64740  4.53464  1.46634  0.26236  1.50467  0.25115
     12   3.89675  2.82363  3.79528  0.10778     13 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01936  4.64715  4.64715  1.46634  0.26236  1.54797  0.23912
     13   4.28673  0.07094  4.01346  3.30607     14 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.09848  2.47456  4.64768  0.21390  1.64728  1.08390  0.41290
     14   0.08172  3.82906  3.70405  3.43842     16 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01923  4.65394  4.65394  1.46634  0.26236  0.63832  0.75116
     15   1.56736  3.34145  0.34873  2.98713     17 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66569  4.66569  1.46634  0.26236  1.09775  0.40590
     16   2.22760  1.16064  2.93726  0.64261     18 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.47307  4.66568  1.00102  1.46634  0.26236  1.09861  0.40547
     17   1.90791  0.88167  2.55701  1.02170     19 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.05442  3.26226  4.22237  0.77705  0.61574  0.06562  2.75648
     18   3.62791  4.70454  0.05231  4.17758     23 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01912  4.65997  4.65997  1.46634  0.26236  1.28282  0.32470
     19   3.43562  4.08449  0.07024  3.97422     24 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01912  4.65997  4.65997  1.46634  0.26236  1.27158  0.32904
     20   2.59919  1.34014  3.15796  0.47587     25 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.06067  3.00786  4.66008  0.39570  1.11843  1.27968  0.32590
     21   0.24469  3.17837  2.09244  2.95620     28 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.10005  2.48696  4.41930  0.21390  1.64728  1.07708  0.41641
     22   3.48544  4.17086  0.06641  4.00765     30 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.05058  3.24491  4.57036  0.43069  1.05000  1.29285  0.32088
     23   0.12474  3.78709  2.68466  3.63546     32 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.09425  2.51997  4.65875  0.22094  1.61831  0.89695  0.52393
     24   1.28586  2.70912  0.54782  2.54102     34 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01904  4.66369  4.66369  1.46634  0.26236  0.97425  0.47397
     25   3.56727  0.14739  3.39925  2.58478     35 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02595  4.31928  4.39791  1.08937  0.41012  1.09861  0.40547
     26   1.05791  2.39630  1.12091  1.44485     37 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01906  4.66280  4.66280  1.46634  0.26236  0.98603  0.46690
     27   1.41504  1.35906  1.47019  1.30823     38 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.02077  4.49791  4.66501  1.26918  0.32998  1.12277  0.39360
     28   2.34431  0.80465  2.14281  1.08024     40 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.66501  3.68231  1.46634  0.26236  1.12277  0.39360
     29   2.32321  1.03196  1.06885  1.59785     41 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01933  4.64914  4.64914  1.46634  0.26236  1.55709  0.23667
     30   3.12298  3.73157  0.09106  3.96053     42 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01933  4.64914  4.64914  1.46634  0.26236  1.55709  0.23667
     31   0.90643  2.95578  0.72479  2.82058     43 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.14704  2.06226  4.64916  1.39017  0.28639  1.55709  0.23667
     32   3.92386  0.07406  4.42752  3.22706     49 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01933  4.64914  4.64914  1.46634  0.26236  1.55709  0.23667
     33   3.22246  3.08457  3.69162  0.11714     50 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.14704  2.06226  4.64916  3.80697  0.02247  1.55709  0.23667
     34   1.61064  1.64861  1.56720  0.91806     99 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.23293  1.61838  4.64914  3.89185  0.02062  1.55709  0.23667
     35   1.79421  1.97602  2.15366  0.54634    180 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01933  4.64914  4.64914  1.46634  0.26236  1.55709  0.23667
     36   1.70928  1.47810  2.08033  0.76348    181 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01933  4.64914  4.64914  1.46634  0.26236  1.55709  0.23667
     37   0.19732  2.49372  3.11262  2.95686    182 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.14252  2.09348  4.64914  4.27113  0.01406  1.55709  0.23667
     38   0.05577  4.09871  3.91415  4.03464    258 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.14834  2.06226  4.53811  3.05294  0.04837  0.57440  0.82793
     39   3.06404  0.79787  2.76648  0.82068    281 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.08967  2.57254  4.66391  0.23101  1.57857  1.04922  0.43111
     40   4.07736  0.10954  3.61158  2.81692    283 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01902  4.66501  4.66501  1.46634  0.26236  1.12277  0.39360
     41   1.77542  1.13340  0.95606  2.08550    284 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.02231  4.37075  4.66501  1.13875  0.38598  1.05199  0.42962
     42   1.20618  2.29779  0.72860  2.14050    286 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     43   1.65034  1.48692  1.22477  1.24437    287 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     44   0.58104  1.89582  2.09862  1.78460    288 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02154  4.66570  4.43151  1.46634  0.26236  1.09861  0.40547
     45   2.26177  2.81566  0.39411  1.82207    289 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.21826  1.67854  4.66321  4.08668  0.01694  0.94873  0.48977
     46   3.52686  4.53352  0.06292  3.87093    387 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01904  4.66570  4.66252  1.46634  0.26236  1.09861  0.40547
     47   1.83894  1.76024  2.71786  0.50585    388 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01901  4.66567  4.66567  1.46634  0.26236  1.09650  0.40652
     48   3.26008  0.16557  3.74319  2.40215    389 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     49   1.48286  1.93367  0.62134  2.39499    390 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     50   2.24631  0.79819  1.58142  1.43387    391 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     51   1.52697  1.15602  1.63722  1.29626    392 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     52   2.58677  3.09064  0.17340  3.25815    393 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02224  4.37558  4.66570  1.14276  0.38410  1.09861  0.40547
     53   3.27274  4.22536  0.07136  4.11332    395 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     54   3.55018  3.43976  4.13825  0.07985    396 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     55   3.21739  3.09712  3.60718  0.11920    397 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     56   3.65624  0.09001  4.07317  3.14127    398 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01902  4.66570  4.66434  1.46634  0.26236  1.09861  0.40547
     57   2.75924  3.85140  0.12131  3.51817    399 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01901  4.66569  4.66569  1.46634  0.26236  1.09771  0.40592
     58   0.07683  3.89012  3.51321  3.74202    400 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     59   1.31638  2.72809  0.62054  2.04875    401 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66570  4.66570  1.46634  0.26236  1.09861  0.40547
     60   2.55906  1.40349  3.13003  0.45702    402 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66569  4.66569  1.46634  0.26236  1.09861  0.40547
     61   4.23816  0.08622  4.08936  2.96762    403 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01900  4.66569  4.66569  1.46634  0.26236  1.09861  0.40547
     62   3.51170  0.19720  2.96131  2.32919    404 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02024  4.66569  4.54426  1.46634  0.26236  1.09861  0.40547
     63   1.47024  1.75094  1.03863  1.41642    405 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01966  4.66447  4.60065  1.46634  0.26236  1.01932  0.44760
     64   1.62368  1.70157  0.72409  1.99756    406 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01902  4.66507  4.66507  1.46634  0.26236  1.05652  0.42719
     65   2.64403  0.69972  1.82377  1.30643    407 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.02142  4.66340  4.44353  1.46634  0.26236  1.09861  0.40547
     66   2.07025  0.65273  2.22000  1.40807    408 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.04135  4.66107  3.47205  1.46634  0.26236  1.17740  0.36828
     67   1.55732  1.18044  1.31286  1.54596    409 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02079  4.63923  4.51780  1.46634  0.26236  1.30218  0.31737
     68   1.85313  1.60248  0.73583  1.81556    410 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01945  4.64285  4.64285  1.46634  0.26236  1.51856  0.24721
     69   1.57769  1.34008  1.03661  1.73121    411 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01942  4.64409  4.64409  1.46634  0.26236  0.63814  0.75135
     70   1.38295  1.95068  0.73433  2.06232    412 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02044  4.65898  4.53245  1.46634  0.26236  0.89971  0.52204
     71   1.99323  1.48425  0.63302  2.24350    413 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01909  4.66121  4.66121  1.46634  0.26236  1.01606  0.44944
     72   0.67020  1.86414  1.51265  2.18002    414 A - - )
          1.38629  1.38629  1.38629  1.38629
          0.02271  4.34206  4.66249  1.11370  0.39801  1.09861  0.40547
     73   1.78084  2.36945  0.41514  2.55457    416 G - - :
          1.38629  1.38629  1.38629  1.38629
          0.03024  4.20672  4.20672  1.46634  0.26236  1.09861  0.40547
     74   3.38134  0.11940  3.94509  2.82690    417 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.03024  4.20672  4.20672  1.46634  0.26236  1.09861  0.40547
     75   3.38134  0.11940  3.94509  2.82690    418 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.03024  4.20672  4.20672  1.46634  0.26236  1.09861  0.40547
     76   0.09627  3.68496  3.36792  3.43502    419 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01524  4.19171        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Asp
ACC      bact-Asp-r2-022416
STATES   245
NODES    66
CLEN     77
W        1388
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 10:13:13 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asp-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asp-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     9139
EFFN     9139.000000
CKSUM    1637946751
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -10.8727 0.71885
ECMLC    0.58556    -9.69288     1.30307     1600000      750756  0.001598
ECMGC    0.29510   -35.51064   -21.81907     1600000       22739  0.017591
ECMLI    0.57393    -9.56120     1.58175     1600000      718825  0.001669
ECMGI    0.30497   -34.03747   -20.80529     1600000       22627  0.017678
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1388  2973 -18.084 -19.329  -0.349  -2.219                 
    IL     1     1 2     1     4    20    43  1392  2977  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    21    44  1392  2977  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    300 - A - -
    MR     3     2 3     5     3    23    44  1391  2976 -19.144  -0.000 -17.461                          2.000 -14.769 -14.043 -14.100 
     D     4     2 3     5     3    16    40  1388  2973 -18.367 -13.545  -0.000                         
    IR     5     5 3     5     3    21    43  1391  2976  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    299 - C - -
    MR     6     5 3     8     3    22    43  1390  2975 -19.144  -0.000 -17.461                         -15.907  2.000 -17.164 -13.968 
     D     7     5 3     8     3    16    40  1388  2973 -18.367 -13.545  -0.000                         
    IR     8     8 3     8     3    21    43  1390  2975  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    298 - C - -
    MR     9     8 3    11     3    21    42  1389  2974 -19.144  -0.000 -17.461                         -15.907  2.000 -17.164 -13.968 
     D    10     8 3    11     3    16    40  1388  2973 -18.367  -0.001 -11.140                         
    IR    11    11 3    11     3    15    30  1389  2974  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    297 - G - -
    MR    12    11 3    14     5    20    41  1388  2973  -7.345  -0.207 -17.947  -2.969 -19.051         -4.156 -2.350  1.874 -3.616 
     D    13    11 3    14     5    12    26  1381  2966  -6.063  -1.418  -3.689  -5.120  -0.987         
    IR    14    14 3    14     5    17    41  1388  2973  -7.628  -0.011 -11.139  -9.307 -10.413          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    295 G C - -
    MP    15    14 3    19     6    19    41  1387  2972 -18.863 -18.803  -0.001 -10.205 -17.859 -18.254 -16.822 -11.113 -19.279 -0.246 -0.194 -11.283 -12.722 -18.676 -14.790  3.818 -3.968 -3.127 -13.090 -11.325 -15.178 -18.444 
    ML    16    14 3    19     6    14    28  1382  2967  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    19    38  1385  2971 -17.502 -16.231  -1.230 -16.209  -0.802 -14.423 -12.265  1.772 -12.920 -0.774 
     D    18    14 3    19     6    11    26  1375  2960 -10.059  -8.758  -4.555  -5.237  -5.254  -0.150 
    IL    19    19 5    19     6    14    29  1386  2971  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    15    30  1386  2971  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    294 G C - -
    MP    21    20 6    25     6    23    39  1385  2970 -18.949 -18.889  -0.000 -17.665 -17.945 -18.340 -12.914 -11.552 -12.732 -0.208 -13.863 -9.645 -0.243 -11.183 -3.065  3.619 -13.417  0.799 -3.361 -4.473 -10.937 -10.609 
    ML    22    20 6    25     6    13    27  1378  2964  -9.667 -10.013  -4.727  -1.165  -9.863  -0.963  1.084 -2.833  0.628 -2.367 
    MR    23    20 6    25     6    18    37  1384  2969 -16.701 -15.430  -0.385 -15.408  -2.094 -13.622 -0.127  1.618 -10.502 -6.149 
     D    24    20 6    25     6    11    26  1374  2959 -10.059  -8.758  -4.555  -5.237  -5.254  -0.150 
    IL    25    25 5    25     6    15    29  1384  2969  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    15    30  1384  2969  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    293 A U - -
    MP    27    26 6    31     6    22    37  1383  2968 -19.034 -18.974  -0.000 -12.144 -13.201 -18.425 -13.734 -12.955 -3.469  3.290 -4.872 -14.339  0.003 -11.279 -13.685  1.103 -14.090 -3.142  1.499 -13.725 -9.876 -12.364 
    ML    28    26 6    31     6    15    32  1382  2967  -8.646  -8.993  -0.174  -3.401  -8.842  -6.372  1.834 -3.074 -2.638 -2.688 
    MR    29    26 6    31     6    17    35  1382  2967 -14.611 -13.340  -0.026 -13.318  -5.849 -11.531  1.978 -8.967 -8.484 -4.199 
     D    30    26 6    31     6    11    26  1373  2958 -12.204 -10.903  -6.700  -7.382  -7.399  -0.032 
    IL    31    31 5    31     6    14    29  1382  2967  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    15    30  1382  2967  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    292 g c - -
    MP    33    32 6    37     6    20    35  1381  2966 -19.059  -7.539  -0.008 -17.775 -18.055 -18.450 -13.052 -5.857 -12.876 -2.126 -13.843 -6.531  1.779 -13.510 -13.292  2.570 -13.549  2.539 -1.555 -12.741 -2.188 -10.752 
    ML    34    32 6    37     6    15    30  1378  2963  -8.176  -8.522  -3.236  -0.204  -8.372  -5.901 -1.754  1.628 -2.579 -1.165 
    MR    35    32 6    37     6    15    30  1378  2963  -9.312  -8.041  -3.950  -8.019  -0.132  -6.233 -1.739 -1.323 -2.485  1.643 
     D    36    32 6    37     6    11    26  1373  2958 -12.204 -10.903  -6.700  -7.382  -7.399  -0.032 
    IL    37    37 5    37     6    14    29  1380  2965  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    17    33  1380  2965  -7.439  -0.013 -10.950  -9.118 -10.224          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      5    290 C G - -
    MP    39    38 6    43     6    18    33  1379  2964 -19.059 -18.998  -0.000 -17.775 -18.055 -18.450 -13.366 -13.068 -13.365 -0.613 -9.944 -14.207  3.176 -10.151 -13.224  0.518 -13.736 -2.239  2.093 -13.549 -1.334 -11.943 
    ML    40    38 6    43     6    15    30  1377  2962  -8.176  -8.522  -3.236  -0.204  -8.372  -5.901 -1.754  1.628 -2.579 -1.165 
    MR    41    38 6    43     6    15    29  1376  2962  -9.312  -8.041  -3.950  -8.019  -0.132  -6.233 -0.827 -0.043 -1.344  1.051 
     D    42    38 6    43     6    11    26  1373  2958 -12.204 -10.903  -6.700  -7.382  -7.399  -0.032 
    IL    43    43 5    43     6    14    29  1378  2963  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    15    29  1378  2963  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      6    289 G C - -
    MP    45    44 6    49     6    16    31  1377  2962  -7.546 -18.998  -0.008 -17.775 -18.055 -18.450 -13.201 -5.865 -1.063 -0.780 -9.879 -13.823  1.731 -13.115 -9.459  3.057 -13.635 -4.956  0.577 -0.241 -0.209 -4.624 
    ML    46    44 6    49     6    14    29  1376  2961  -8.176  -8.522  -0.246  -2.931  -8.372  -5.901 -1.754  1.628 -2.579 -1.165 
    MR    47    44 6    49     6    14    28  1375  2961  -9.312  -8.041  -0.743  -8.019  -1.395  -6.233  0.066 -0.826 -1.368  1.001 
     D    48    44 6    49     6    11    26  1372  2958 -12.204 -10.903  -3.018  -7.382  -7.399  -0.211 
    IL    49    49 5    49     6    15    30  1376  2961  -8.306  -8.569  -0.011 -10.224 -11.001 -10.661  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    14    29  1376  2961  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      8    288 G C - -
    MP    51    50 6    55     4    14    29  1375  2960 -18.289  -7.623  -0.051  -5.063                 -16.701 -13.592 -18.116 -0.515 -18.310 -14.820 -3.992 -18.014 -14.956  3.864 -15.168 -2.768 -0.951 -5.880 -15.143 -17.009 
    ML    52    50 6    55     4    13    27  1374  2959  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    12    27  1373  2959  -6.157  -5.186  -2.281  -0.410                 -0.900  1.287 -1.679 -0.491 
     D    54    50 6    55     4    11    26  1372  2957  -7.465  -7.146  -5.162  -0.060                 
    IL    55    55 5    55     4    13    28  1375  2960  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    13    28  1374  2959  -6.318  -0.021  -9.018                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]      9      - U - - -
    ML    57    56 6    59     3    12    27  1373  2958 -19.155  -0.000 -17.809                         -13.357 -5.853 -6.213  1.989 
     D    58    56 6    59     3    11    26  1372  2957 -15.581  -0.001  -9.973                         
    IL    59    59 3    59     3    12    27  1374  2959  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     10      - A - - -
    ML    60    59 3    62     2    11    26  1372  2957 -19.855  -0.000                                  1.708 -7.024 -0.463 -13.992 
     D    61    59 3    62     2    10    25  1371  2956  -8.445  -0.004                                 
    IL    62    62 3    62     2    11    26  1372  2958  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    10    25  1371  2956                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     0     2   199   434 -19.199  -0.000 -17.853                         
    IL    65    65 2    65     3     1     2   203   438  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    240      - G - - -
    ML    66    65 2    68     3     1     2   199   434 -19.199  -0.098  -3.931                          0.656 -1.847  1.059 -4.007 
     D    67    65 2    68     3     0     1   216   451  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     2   201   436  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    241      - G - - -
    ML    69    68 3    71     3     1     2   192   427  -3.825  -0.106 -17.756                         -2.954 -7.450  1.899 -2.879 
     D    70    68 3    71     3     0     1   221   456  -0.481  -1.820 -11.080                         
    IL    71    71 3    71     3     1     1   225   460  -0.113  -4.583  -4.894                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    263      - G - - -
    ML    72    71 3    74     3     1     2    26    44 -19.125  -0.000 -17.779                         -0.356 -6.508  1.681 -14.070 
     D    73    71 3    74     3     0     0    25    43 -16.310 -11.823  -0.000                         
    IL    74    74 3    74     3     1     1    36    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    264      - U - - -
    ML    75    74 3    77     3     1     1    25    43 -19.125  -0.008  -7.420                         -2.040 -1.635 -4.498  1.762 
     D    76    74 3    77     3     0     0    24    42 -16.310  -0.214  -2.861                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    265      - C - - -
    ML    78    77 3    80     5     1     2    23    42 -18.114  -0.000 -17.929 -18.142 -19.033         -4.487  1.904 -13.660 -2.237 
     D    79    77 3    80     5     0     0    22    36 -12.256  -8.100 -11.518  -0.855  -1.174         
    IL    80    80 3    80     5     1     1    27    42  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    266    286 G U - -
    MP    81    80 3    85     6     2     3    22    41 -19.042  -6.853  -0.013 -13.552 -18.038 -18.433 -15.091 -3.942 -15.287 -0.729 -17.428 -18.583 -12.886 -15.329 -14.847 -1.046 -5.123  3.862 -12.810 -16.592 -14.716 -1.869 
    ML    82    80 3    85     6     1     1    24    39  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    21    35 -13.312 -12.041  -7.950 -12.020  -7.153  -0.017  1.995 -8.186 -7.450 -7.582 
     D    84    80 3    85     6     0     0    19    33 -15.603 -14.301 -10.098 -10.780 -10.798  -0.003 
    IL    85    85 5    85     6     1     1    25    40  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    21    40  -7.483  -0.011 -11.606  -9.774 -10.880          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    267    283 C G - -
    MP    87    86 6    91     6     2     3    20    39 -19.042 -18.982  -0.008 -17.758  -7.552 -18.433 -16.006 -15.960 -3.948 -0.319 -13.857 -15.646  3.852 -14.717 -15.465 -1.307 -15.632 -13.927 -1.823 -15.968 -11.557 -6.826 
    ML    88    86 6    91     6     1     1    22    38  -7.268  -7.614  -0.504  -2.023  -7.464  -4.993 -0.538  1.027 -1.285 -0.214 
    MR    89    86 6    91     6     1     1    22    37  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    90    86 6    91     6     0     0    17    32 -16.763 -15.461 -11.258 -11.940 -11.958  -0.001 
    IL    91    91 5    91     6     1     1    24    38  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    23    38  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    268    282 G C - -
    MP    93    92 6    97     6     2     3    18    37 -19.035 -18.974  -0.000 -17.750 -11.570 -18.425 -16.957 -3.953 -19.235 -0.190 -18.578 -9.936  0.411 -18.728 -14.958  3.743 -15.150 -1.570 -13.245 -15.216 -15.328 -18.328 
    ML    94    92 6    97     6     1     1    22    37  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     6     1     1    18    36 -12.923 -11.652  -0.016 -11.630  -6.764  -9.844 -7.143  1.991 -7.606 -6.193 
     D    96    92 6    97     6     0     0    16    32 -16.763 -15.461 -11.258 -11.940 -11.958  -0.001 
    IL    97    97 5    97     6     1     1    22    37  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    21    36  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    269    281 G C - -
    MP    99    98 6   103     6     2     3    16    35 -19.042  -6.580  -0.015 -17.758 -18.037 -18.433 -16.872 -4.132 -18.802 -0.831 -18.557 -14.798 -12.900 -18.416 -14.964  3.943 -15.168 -8.045 -13.251 -15.253 -15.330 -17.721 
    ML   100    98 6   103     6     1     1    21    37  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     1    19    35  -9.207  -7.936  -0.226  -7.915  -3.048  -6.128 -2.124 -2.012 -2.883  1.760 
     D   102    98 6   103     6     0     0    15    32 -16.763 -15.461 -11.258 -11.940 -11.958  -0.001 
    IL   103   103 5   103     6     1     1    20    36  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    16    34  -8.360  -0.007 -11.871 -10.039 -11.145          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    270    279 G C - -
    MP   105   104 6   109     4     2     3    14    32 -18.272  -7.529  -0.008 -16.893                 -16.985 -6.146 -19.362 -3.665 -18.611 -14.758 -12.901 -18.795 -5.147  3.979 -15.159 -4.528 -13.267 -3.863 -15.354 -18.482 
    ML   106   104 6   109     4     1     1    20    36  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    20    36  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0    15    32 -12.185 -11.867  -9.882  -0.002                 
    IL   109   109 5   109     4     1     1    22    37  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    13    31  -6.392  -0.020  -9.092                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    271      - U - - -
    ML   111   110 6   113     3     1     2    12    30 -19.181  -0.000 -17.835                         -13.625 -7.142 -5.104  1.987 
     D   112   110 6   113     3     0     0    13    32 -14.297  -9.810  -0.002                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    272      - U - - -
    ML   114   113 3   116     3     1     2    11    29 -19.181  -0.000 -17.835                         -13.639 -5.989 -7.158  1.992 
     D   115   113 3   116     3     0     0    12    31 -14.297  -0.851  -1.166                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    273      - C - - -
    ML   117   116 3   119     3     1     2    10    28 -19.191  -0.000 -17.845                         -13.296  1.984 -6.220 -5.009 
     D   118   116 3   119     3     0     0    12    30 -13.134  -8.647  -0.004                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    274      - G - - -
    ML   120   119 3   122     3     1     2     8    27 -19.191  -0.000 -17.845                         -1.689 -15.470  1.884 -14.457 
     D   121   119 3   122     3     0     0    11    29 -13.134  -8.647  -0.004                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    275      - A - - -
    ML   123   122 3   125     3     1     2     7    25 -19.191  -0.000 -17.845                          1.993 -7.545 -7.557 -6.958 
     D   124   122 3   125     3     0     0    10    28 -13.134  -8.647  -0.004                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    276      - G - - -
    ML   126   125 3   128     3     1     1     5    24 -19.191  -0.000 -17.845                         -0.259 -3.016  1.436 -1.581 
     D   127   125 3   128     3     0     0     8    27 -13.134  -0.008  -7.526                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    277      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -6.957 -1.250 -6.688  1.833 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     3    16  1348  2933   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     3    16  1348  2933                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     5  1288  2874  -0.000 -17.191 -16.598 -17.238                 
                                             [ MATP   18 ]     11    141 G U - -
    MP   136   135 1   140     6     2     7  1288  2874 -19.060 -19.000  -0.046  -5.000 -18.056 -18.451 -15.110 -13.769 -15.305 -2.390 -17.446 -18.588 -12.903 -15.348 -3.032  2.377 -0.155  3.162 -12.828 -1.064 -3.170 -4.234 
    ML   137   135 1   140     6     1     2  1284  2869  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     2  1280  2865  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   139   135 1   140     6     0     1  1252  2837  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     2  1286  2871  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     2  1286  2871  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     12    140 U A - -
    MP   142   141 6   146     6     2     7  1287  2872  -7.125 -18.954  -0.050  -5.204 -18.010 -18.405 -15.672 -15.757 -15.154 -1.638 -13.596 -15.415  1.604 -14.468 -2.986 -2.889 -15.406 -13.782  3.534 -15.600 -2.442 -0.718 
    ML   143   141 6   146     6     1     5  1284  2870 -14.939 -15.285 -10.000  -0.002 -15.135 -12.665  1.999 -10.202 -9.438 -9.542 
    MR   144   141 6   146     6     1     2  1278  2863  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   145   141 6   146     6     0     1  1242  2827  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     5  1286  2871  -8.678  -8.941  -0.009 -10.596 -11.372 -11.032  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     2  1284  2869  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     14    139 U A - -
    MP   148   147 6   152     6     2     7  1285  2870 -18.975 -18.914  -0.001 -17.691 -11.150 -18.366 -4.718 -15.833 -15.169 -3.464 -12.696 -10.610 -1.661 -14.476 -2.946  2.290 -15.417 -13.920  3.264 -0.155 -4.931 -14.022 
    ML   149   147 6   152     6     1     5  1284  2869 -15.818 -16.164  -0.028  -5.715 -16.014 -13.543 -2.525 -7.990  1.058  0.799 
    MR   150   147 6   152     6     1     2  1276  2861  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   151   147 6   152     6     0     1  1229  2814  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   152   152 5   152     6     1     2  1281  2866  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     2  1282  2867  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     15    138 C G - -
    MP   154   153 6   158     4     2     6  1283  2868 -18.288 -18.495  -0.000 -13.163                 -0.276 -13.056 -12.598 -2.582 -2.969 -13.030  3.365  0.282 -5.949 -3.635 -12.806 -0.426  0.742 -13.538 -1.956 -0.762 
    ML   155   153 6   158     4     1     2  1281  2866  -7.268  -7.451  -0.038  -6.180                 -4.271 -3.891 -5.074  1.945 
    MR   156   153 6   158     4     1     2  1275  2860  -7.492  -6.521  -0.165  -3.449                 -2.716 -4.077  1.886 -3.446 
     D   157   153 6   158     4     0     1  1209  2795  -4.568  -4.250  -2.265  -0.520                 
    IL   158   158 5   158     4     1     2  1277  2862  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     2  1276  2861  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     16      - A - - -
    ML   160   159 6   162     3     1     4  1281  2866 -19.199  -0.000 -17.853                          1.995 -7.155 -6.957 -14.412 
     D   161   159 6   162     3     0     0  1142  2727  -7.872  -3.385  -0.152                         
    IL   162   162 3   162     3     1     2  1274  2859  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     17      - G - - -
    ML   163   162 3   165     3     1     3  1280  2865 -19.199  -0.000 -17.853                         -1.513 -7.496  1.863 -7.307 
     D   164   162 3   165     3     0     0  1092  2677  -7.872  -3.385  -0.152                         
    IL   165   165 3   165     3     1     2  1272  2857  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     18      - U - - -
    ML   166   165 3   168     3     1     2  1279  2864  -1.954  -0.828  -2.486                         -1.863  0.670 -4.459  1.063 
     D   167   165 3   168     3     0     0   925  2510  -7.872  -3.385  -0.152                         
    IL   168   168 3   168     3     1     5  1394  2979  -0.017  -6.436 -21.074                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]    122      - U - - -
    ML   169   168 3   171     3     1     2    39    80  -4.163  -0.083 -17.570                         -1.372 -1.013 -12.229  1.641 
     D   170   168 3   171     3     0     0    38    79 -18.133  -0.004  -8.660                         
    IL   171   171 3   171     3     1     2    39    80  -3.151  -0.173 -12.322                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]    125      - G - - -
    ML   172   171 3   174     3     1     2    38    79 -19.199  -0.000 -17.853                         -13.893 -15.420  1.827 -1.145 
     D   173   171 3   174     3     0     0    37    78  -9.520  -0.101  -3.911                         
    IL   174   174 3   174     3     1     1    39    80  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]    126      - G - - -
    ML   175   174 3   177     3     1     2    37    78 -19.199  -0.000 -17.853                         -1.986 -14.671  1.906 -14.009 
     D   176   174 3   177     3     0     0    34    75  -6.174  -1.687  -0.566                         
    IL   177   177 3   177     3     1     1    38    79  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]    127      - U - - -
    ML   178   177 3   180     3     1     1    36    77  -2.472  -0.313  -6.058                         -1.732 -1.176 -12.816  1.703 
     D   179   177 3   180     3     0     0    29    70  -6.174  -1.687  -0.566                         
    IL   180   180 3   180     3     1     2    39    80  -0.642  -1.477 -15.598                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]    136      - U - - -
    ML   181   180 3   183     3     1     1     5    24 -19.177  -0.000 -17.832                         -1.665 -1.083 -3.736  1.650 
     D   182   180 3   183     3     0     0     7    26 -14.564  -0.003  -8.955                         
    IL   183   183 3   183     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]    137      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.832 -3.137 -2.381 -2.896 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     0   938  2097 -19.199  -0.000 -17.853                         
    IL   189   189 2   189     3     1     1   939  2097  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]    142      - G - - -
    ML   190   189 2   192     5     1     1   938  2097  -5.139  -0.127 -17.948  -4.155 -19.051          0.783 -3.111  1.083 -4.471 
     D   191   189 2   192     5     0     0   928  2086  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   192   192 3   192     5     1     1   938  2097  -9.804  -0.002 -11.483 -13.315 -12.589          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    144    239 C G - -
    MP   193   192 3   197     6     2     2   937  2096 -18.977 -18.916  -0.005  -8.081 -17.973 -18.368 -3.092 -14.474 -5.796 -4.273 -3.690 -14.961  3.683 -13.838 -14.364 -4.989 -0.158 -0.166 -0.030 -14.719 -3.387 -13.111 
    ML   194   192 3   197     6     1     1   889  2048  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   195   192 3   197     6     1     1   936  2095 -16.317 -15.046  -0.002 -15.024 -10.158 -13.238 -9.577 -11.342  1.999 -10.331 
     D   196   192 3   197     6     0     0   873  2032  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   197   197 5   197     6     1     1   931  2089  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     1   933  2092  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    145    238 C G - -
    MP   199   198 6   203     6     2     2   935  2094 -19.055 -18.995  -0.008 -17.771  -7.561 -18.446 -15.129 -15.008 -14.811 -2.619 -13.395 -15.254  3.802 -14.195 -14.789 -0.369 -9.644 -8.247 -1.681 -15.173 -0.399 -4.862 
    ML   200   198 6   203     6     1     1   731  1890 -11.801 -12.147  -6.862  -0.016 -11.997  -9.527 -6.502  1.986 -6.953 -5.592 
    MR   201   198 6   203     6     1     1   929  2088  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   202   198 6   203     6     0     0   857  2016  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   203   203 5   203     6     1     1   929  2087  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     1   932  2090  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    146    237 u a - -
    MP   205   204 6   209     6     2     2   933  2092 -19.048 -18.987  -0.000 -17.764 -18.043 -18.438 -13.853 -6.886 -13.786 -1.221 -13.861 -14.656  0.084 -0.366 -10.770  2.726 -14.285 -8.791  2.823 -5.143 -11.214 -12.569 
    ML   206   204 6   209     6     1     1   713  1872 -11.801 -12.147  -6.862  -6.556 -11.997  -0.029 -6.754 -6.121 -7.671  1.990 
    MR   207   204 6   209     6     1     1   933  2092 -12.928  -0.028  -6.907 -11.635  -6.769  -9.848 -7.148  1.991 -7.611 -6.197 
     D   208   204 6   209     6     0     0   829  1987  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   209   209 5   209     6     1     1   930  2088  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1   932  2091  -7.410  -0.013 -10.921  -9.089 -10.195          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    147    235 G C - -
    MP   211   210 6   215     6     2     2   931  2090  -3.669 -18.995  -0.150 -14.419  -5.641 -18.446 -13.093  0.017 -12.916 -4.845 -14.041 -10.914  0.933 -8.611 -13.337  3.664 -13.587 -2.175 -3.659 -4.213 -11.119 -6.407 
    ML   212   210 6   215     6     1     1   922  2080  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   213   210 6   215     6     1     1   925  2084  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   214   210 6   215     6     0     0   656  1814 -14.942 -13.641  -9.438 -10.120 -10.137  -0.005 
    IL   215   215 5   215     6     1     1   930  2089 -12.155 -12.418  -0.001 -14.073 -14.849 -14.510  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     1   928  2087  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]    149    234 C G - -
    MP   217   216 6   221     4     2     2   929  2088 -18.256 -18.463  -0.000 -16.877                 -13.416 -13.122 -3.482 -0.714 -7.398 -5.106  3.795 -9.521 -13.268 -0.278 -3.510 -6.904 -1.849 -13.594 -2.425 -11.988 
    ML   218   216 6   221     4     1     1   920  2079  -4.246  -4.429  -0.342  -3.158                 -0.197  0.660 -0.911  0.023 
    MR   219   216 6   221     4     1     1   928  2087 -12.856 -11.885  -0.004  -8.813                 -8.118 -9.891  1.998 -8.878 
     D   220   216 6   221     4     0     0   638  1797 -10.366 -10.047  -8.063  -0.008                 
    IL   221   221 5   221     4     1     1   924  2083  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     1   923  2081  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    150      - C - - -
    ML   223   222 6   225     3     1     1   927  2086 -19.194  -0.000 -17.848                         -13.272  1.879 -2.439 -2.860 
     D   224   222 6   225     3     0     0   592  1750 -12.472  -7.985  -0.006                         
    IL   225   225 3   225     3     1     1   922  2080  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    151      - U - - -
    ML   226   225 3   228     3     1     1   926  2085  -2.152  -0.368 -17.848                         -16.221 -2.301 -17.606  1.925 
     D   227   225 3   228     3     0     0   475  1634 -12.472  -7.985  -0.006                         
    IL   228   228 3   228     3     1     1  1019  2177  -0.023  -5.986 -20.422                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    229      - g - - -
    ML   229   228 3   231     3     1     1    10    28 -19.194  -0.000 -17.848                         -0.496 -0.932  0.601  0.321 
     D   230   228 3   231     3     0     0    12    31 -12.472  -7.985  -0.006                         
    IL   231   231 3   231     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    230      - U - - -
    ML   232   231 3   234     3     1     1     8    27 -19.194  -0.000 -17.848                         -0.931 -0.932 -0.517  1.171 
     D   233   231 3   234     3     0     0    11    30 -12.472  -7.985  -0.006                         
    IL   234   234 3   234     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    231      - C - - -
    ML   235   234 3   237     3     1     1     7    25 -19.194  -0.000 -17.848                         -0.931  1.172 -0.518 -0.931 
     D   236   234 3   237     3     0     0    10    29 -12.472  -7.985  -0.006                         
    IL   237   237 3   237     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    232      - A - - -
    ML   238   237 3   240     3     1     1     5    24 -19.194  -0.000 -17.848                          1.941 -5.670 -4.451 -3.402 
     D   239   237 3   240     3     0     0     9    27 -12.472  -7.985  -0.006                         
    IL   240   240 3   240     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    233      - C - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                 -0.994  1.803 -14.024 -6.730 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Asp
ACC   bact-Asp-r2-022416
LENG  77
MAXL  1321
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 10:13:13 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asp-r2-022416.sto
NSEQ  9139
EFFN  6.846127
CKSUM 1637946751
STATS LOCAL MSV       -8.5484  0.71885
STATS LOCAL VITERBI   -9.3592  0.71885
STATS LOCAL FORWARD   -3.1176  0.71885
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58106  1.33152  1.22799  1.43848
          1.38629  1.38629  1.38629  1.38629
          0.11204  4.46144  2.35971  1.46634  0.26236  0.00000        *
      1   1.93876  2.38834  0.38145  2.50758      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02550  4.37490  4.37490  1.46634  0.26236  0.82013  0.58049
      2   1.87908  2.42106  0.39401  2.47577      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02472  4.41906  4.39234  1.46634  0.26236  0.35473  1.20853
      3   1.06554  1.76243  1.34221  1.50254      3 a - - (
          1.38629  1.38629  1.38629  1.38629
          0.02342  4.46232  4.45570  1.46634  0.26236  1.10760  0.40100
      4   2.02407  1.71526  0.56833  2.10788      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02304  4.47499  4.47499  1.46634  0.26236  1.10979  0.39992
      5   2.23982  0.85318  1.83427  1.17852      5 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02304  4.47499  4.47499  1.46634  0.26236  1.10979  0.39992
      6   1.80859  1.56537  0.92766  1.46264      6 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.02716  4.17339  4.47499  1.13166  0.38934  1.10979  0.39992
      7   2.27401  3.16572  0.23070  2.79790      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04625  4.47521  3.38691  1.46634  0.26236  1.10979  0.39992
      8   3.28240  3.11335  3.70625  0.11268      9 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02357  4.45254  4.45254  1.46634  0.26236  0.51044  0.91688
      9   0.28979  3.40238  1.72924  3.19742     10 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47561  4.47561  1.46634  0.26236  1.09861  0.40547
     10   1.88204  2.30678  0.45516  2.17337     11 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47561  4.47561  1.46634  0.26236  1.09861  0.40547
     11   2.23296  1.31866  2.09618  0.68842     12 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.02837  4.09900  4.47561  1.06180  0.42439  1.09861  0.40547
     12   1.99566  1.74989  1.23682  0.91634     14 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.02335  4.47561  4.44888  1.46634  0.26236  1.09861  0.40547
     13   1.81017  0.90423  1.78180  1.33490     15 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.02311  4.47530  4.46869  1.46634  0.26236  1.08088  0.41445
     14   0.04653  4.36746  3.99273  4.24557     16 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47553  4.47553  1.46634  0.26236  1.10082  0.40436
     15   2.35040  3.86517  0.15775  3.51828     17 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47553  4.47553  1.46634  0.26236  1.10082  0.40436
     16   1.98455  1.06950  2.74261  0.78751     18 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.43083  1.58554  1.92969  4.42830  0.01201  1.10082  0.40436
     17   1.99331  1.91339  2.88905  0.41468    122 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.06827  2.94041  4.33187  0.50518  0.92482  0.14773  1.98536
     18   3.02136  3.72613  0.17739  2.41096    125 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02304  4.47530  4.47530  1.46634  0.26236  1.08088  0.41445
     19   2.66360  4.20634  0.11247  3.82663    126 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47561  4.47561  1.46634  0.26236  1.09861  0.40547
     20   2.21643  2.04488  3.14804  0.33035    127 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.18531  1.92055  3.78844  1.05029  0.43053  1.09861  0.40547
     21   2.09039  1.96724  2.80605  0.39145    136 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02329  4.46429  4.46429  1.46634  0.26236  0.69614  0.69016
     22   0.25087  2.73708  2.56423  2.52400    137 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02384  4.47561  4.40815  1.46634  0.26236  1.09861  0.40547
     23   1.50087  2.04107  0.85495  1.50565    138 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.06739  4.47481  2.92287  1.46634  0.26236  1.12161  0.39416
     24   1.05290  1.27125  1.56761  1.81985    139 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.02408  4.43150  4.43150  1.46634  0.26236  0.91077  0.51452
     25   0.79456  2.29864  1.17732  1.96809    140 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.02359  4.45189  4.45189  1.46634  0.26236  0.50305  0.92806
     26   2.47652  0.97625  1.97631  0.91463    141 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47561  4.47561  1.46634  0.26236  1.09861  0.40547
     27   0.94881  2.64975  0.79065  2.42384    142 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09006  3.42184  2.92865  0.59346  0.80389  1.09861  0.40547
     28   2.18349  0.70484  1.77025  1.50115    144 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.02405  4.43261  4.43261  1.46634  0.26236  0.35473  1.20853
     29   2.83257  0.40066  2.33208  1.74774    145 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02709  4.47561  4.17730  1.46634  0.26236  1.09861  0.40547
     30   2.08018  1.58122  1.09341  1.09573    146 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.02581  4.47164  4.26505  1.46634  0.26236  0.90993  0.51509
     31   1.85460  2.16402  0.44032  2.46753    147 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.10176  2.65457  3.63344  0.29795  1.35611  1.17232  0.37055
     32   2.25694  0.56761  1.99041  1.65123    149 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02345  4.45786  4.45786  1.46634  0.26236  0.67444  0.71222
     33   3.28989  0.17135  3.16244  2.55247    150 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  1.17232  0.37055
     34   3.28928  2.60361  3.80476  0.14335    151 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.21247  1.71480  4.47299  4.11270  0.01650  1.17232  0.37055
     35   1.42139  1.82001  1.23498  1.18497    229 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  1.17232  0.37055
     36   1.55954  1.79652  1.75627  0.79583    230 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  1.17232  0.37055
     37   1.61156  0.89106  1.79423  1.49635    231 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  1.17232  0.37055
     38   0.12066  3.46485  3.25993  3.12363    232 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  1.17232  0.37055
     39   2.21905  0.22800  3.73306  2.64162    233 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.02312  4.47299  4.47029  1.46634  0.26236  1.17232  0.37055
     40   1.88257  2.14750  0.50194  2.07409    234 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47296  4.47296  1.46634  0.26236  1.17046  0.37139
     41   2.72547  0.47009  2.04005  1.71749    235 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02715  4.17549  4.47299  1.13561  0.38747  1.17232  0.37055
     42   1.20832  1.16887  1.52264  1.75765    237 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  1.17232  0.37055
     43   2.13298  2.43794  0.33258  2.56256    238 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.02309  4.47299  4.47299  1.46634  0.26236  0.96573  0.47917
     44   1.67895  2.20835  0.60056  1.86406    239 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.47561  4.47561  1.46634  0.26236  1.09861  0.40547
     45   1.04386  2.29848  0.82409  2.21766    240 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03737  4.47561  3.67698  1.46634  0.26236  1.09861  0.40547
     46   2.67182  3.66987  0.15701  2.98189    241 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.11534  2.32900  4.46159  2.46918  0.08845  0.64180  0.74728
     47   1.64560  3.41318  0.31496  3.11572    263 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.06249  4.47561  3.01196  1.46634  0.26236  1.09861  0.40547
     48   2.29175  2.20227  3.02199  0.30157    264 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02838  4.43706  4.12591  1.46634  0.26236  0.49173  0.94563
     49   3.27634  0.14952  3.99360  2.49280    265 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02325  4.46622  4.46622  1.46634  0.26236  1.34039  0.30346
     50   2.20637  4.01441  0.17974  3.31441    266 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02325  4.46622  4.46622  1.46634  0.26236  1.34039  0.30346
     51   2.44527  0.38428  2.42612  1.93808    267 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02733  4.46622  4.16872  1.46634  0.26236  1.34039  0.30346
     52   2.05511  2.44340  0.32189  2.80883    268 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02359  4.46223  4.44140  1.46634  0.26236  1.12970  0.39028
     53   2.83992  4.22262  0.09353  4.12295    269 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02326  4.46598  4.46598  1.46634  0.26236  1.32505  0.30896
     54   3.13337  4.08370  0.08428  3.89153    270 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02325  4.46622  4.46622  1.46634  0.26236  1.34039  0.30346
     55   3.22010  3.10148  3.56695  0.12011    271 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02325  4.46622  4.46622  1.46634  0.26236  1.34039  0.30346
     56   3.41269  3.21860  3.87170  0.09848    272 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02325  4.46622  4.46622  1.46634  0.26236  0.96501  0.47962
     57   3.90380  0.07525  4.21302  3.28275    273 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.02313  4.47144  4.47144  1.46634  0.26236  1.21343  0.35265
     58   2.50427  4.09617  0.13061  3.72688    274 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02313  4.47144  4.47144  1.46634  0.26236  1.21343  0.35265
     59   0.04808  4.34003  3.99915  4.16193    275 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02313  4.47144  4.47144  1.46634  0.26236  1.21343  0.35265
     60   1.50900  2.54988  0.56790  2.00945    276 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02313  4.47144  4.47144  1.46634  0.26236  0.90228  0.52028
     61   2.93008  2.17075  3.42550  0.22317    277 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.17399  3.87647  1.13164  0.38935  1.09861  0.40547
     62   4.08642  0.10064  3.92316  2.82740    279 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03128  3.94758  4.46622  0.94110  0.49462  1.34039  0.30346
     63   4.23423  0.10924  4.05513  2.63580    281 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02325  4.46622  4.46622  1.46634  0.26236  1.34039  0.30346
     64   3.05107  0.37622  2.32507  1.78104    282 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02331  4.46622  4.46111  1.46634  0.26236  1.34039  0.30346
     65   2.16170  2.57531  0.34556  2.29346    283 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.02989  4.01972  4.46616  1.00101  0.45809  0.96284  0.48096
     66   3.86702  2.36725  3.70864  0.14986    286 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.02736  4.18337  4.44472  1.14476  0.38317  0.90228  0.52028
     67   2.97638  0.26863  2.98512  2.00945    288 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02320  4.47525  4.46135  1.46634  0.26236  1.10760  0.40100
     68   1.81451  0.95987  1.32196  1.67382    289 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02304  4.47509  4.47509  1.46634  0.26236  1.11221  0.39873
     69   1.34717  2.00046  0.75834  1.99285    290 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02717  4.17221  4.47509  1.13043  0.38993  1.11221  0.39873
     70   2.35577  0.92353  1.58736  1.19204    292 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02329  4.47509  4.45399  1.46634  0.26236  1.09831  0.40562
     71   1.62844  1.47033  1.60239  0.98752    293 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.02304  4.47501  4.47501  1.46634  0.26236  1.11462  0.39756
     72   2.55781  0.53776  2.25367  1.45475    294 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02304  4.47501  4.47501  1.46634  0.26236  1.06735  0.42147
     73   2.40158  0.46407  2.42265  1.65016    295 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02776  4.13569  4.47556  1.09545  0.40705  1.09861  0.40547
     74   2.56488  2.83967  0.21576  2.83532    297 G - - :
          1.38629  1.38629  1.38629  1.38629
          0.02751  4.30008  4.30008  1.46634  0.26236  1.09861  0.40547
     75   4.03731  0.06358  4.53267  3.40506    298 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02751  4.30008  4.30008  1.46634  0.26236  1.09861  0.40547
     76   4.03731  0.06358  4.53267  3.40506    299 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02751  4.30008  4.30008  1.46634  0.26236  1.09861  0.40547
     77   0.05210  4.27684  3.91872  4.07392    300 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01385  4.28642        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Cys
ACC      bact-Cys-r2-022416
STATES   239
NODES    64
CLEN     75
W        991
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 13:13:06 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Cys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Cys-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Cys-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     4651
EFFN     4651.000000
CKSUM    744108839
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -13.7292 0.71878
ECMLC    0.69018    -7.93227     1.27861     1600000      691916  0.001734
ECMGC    0.35363   -32.31360   -21.14893     1600000       20735  0.019291
ECMLI    0.57232    -9.58759     1.41395     1600000      651161  0.001843
ECMGI    0.36646   -28.84585   -18.22041     1600000       19638  0.020369
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1   991  2096 -17.110 -18.355  -0.625  -1.509                 
    IL     1     1 2     1     4    30    53   994  2099  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    31    53   994  2100  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    215 - A - -
    MR     3     2 3     5     3    32    53   993  2099 -17.894  -0.000 -16.211                          2.000 -13.524 -12.784 -12.856 
     D     4     2 3     5     3    28    50   990  2096 -18.103 -13.281  -0.000                         
    IR     5     5 3     5     3    31    53   993  2099  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    214 - C - -
    MR     6     5 3     8     3    31    52   992  2098 -17.894  -0.000 -16.211                         -14.494  2.000 -15.592 -12.673 
     D     7     5 3     8     3    28    50   990  2096 -18.103 -13.281  -0.000                         
    IR     8     8 3     8     3    31    52   992  2098  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    213 - C - -
    MR     9     8 3    11     3    30    51   991  2097 -17.894  -0.000 -16.211                         -14.494  2.000 -15.592 -12.673 
     D    10     8 3    11     3    28    50   990  2096 -18.103  -0.000 -12.333                         
    IR    11    11 3    11     3    24    44   991  2097  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    212 - U - -
    MR    12    11 3    14     5    30    50   990  2096  -5.941  -0.044 -16.973  -6.218 -18.077         -1.445 -4.844 -1.127  1.651 
     D    13    11 3    14     5    20    38   987  2093  -5.352  -0.707  -2.978  -4.409  -2.404         
    IR    14    14 3    14     5    27    49   991  2096  -1.329  -0.735 -12.286 -10.454 -11.560          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    209 G C - -
    MP    15    14 3    19     6    31    49   989  2095 -18.068  -6.881  -0.012 -16.783 -17.063 -17.458 -12.185 -10.281 -5.589 -0.050 -13.141 -11.264 -3.651 -12.698 -12.403  3.823 -12.649 -2.406 -0.773 -10.931 -10.213 -10.977 
    ML    16    14 3    19     6    21    40   986  2092  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    25    45   986  2092 -13.295 -12.024  -2.695 -12.003  -0.244 -10.216 -6.820  1.918 -7.242 -2.277 
     D    18    14 3    19     6    19    36   980  2086  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    19    19 5    19     6    22    41   988  2094  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    25    47   988  2094  -7.117  -0.016 -10.629  -8.796  -9.902          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    207 G C - -
    MP    21    20 6    25     6    30    47   987  2093 -18.071 -18.010  -0.000 -16.786 -17.066 -17.461 -12.317 -10.351 -12.153  0.680 -13.274 -11.295  0.529 -12.837 -12.495  3.587 -12.738 -0.388 -2.554 -10.990 -10.345 -11.118 
    ML    22    20 6    25     6    21    39   984  2090  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    23    20 6    25     6    25    45   985  2091 -13.060 -11.789  -2.750 -11.768  -0.235  -9.981 -7.300  1.992 -7.767 -6.337 
     D    24    20 6    25     6    19    36   979  2084  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    25    25 5    25     6    22    41   986  2092  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    22    41   986  2092  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    206 C G - -
    MP    27    26 6    31     6    28    45   985  2091 -18.073 -18.012  -0.004 -16.789  -8.692 -17.464 -13.970 -13.849 -13.692  0.107 -4.946 -14.168  3.358 -13.087 -13.659  1.478 -13.993 -11.595  0.858 -14.020 -4.794 -12.412 
    ML    28    26 6    31     6    21    39   982  2088  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    29    26 6    31     6    25    44   984  2090 -12.836 -11.565  -0.017 -11.543  -6.677  -9.757 -6.250 -8.007  1.991 -7.009 
     D    30    26 6    31     6    18    36   977  2083  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    31    31 5    31     6    22    40   984  2090  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    22    41   984  2089  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    205 g c - -
    MP    33    32 6    37     6    27    43   983  2089  -5.743 -18.023  -0.027 -16.799 -17.079 -17.474 -12.089 -5.320 -11.926 -0.224 -12.614 -12.543  2.355 -12.455 -12.298  2.989 -12.577 -0.479 -0.013 -11.808 -2.908 -2.171 
    ML    34    32 6    37     6    21    39   980  2086  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    22    39   979  2085 -10.887  -9.616  -5.525  -9.594  -0.043  -7.808 -2.275 -0.085  1.428 -2.642 
     D    36    32 6    37     6    18    35   976  2082  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    37    37 5    37     6    26    44   984  2090  -1.005  -1.006  -8.296 -12.033 -12.809 -12.470  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    25    42   982  2088  -8.241  -0.007 -11.752  -9.920 -11.026          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      7    203 c g - -
    MP    39    38 6    43     6    25    41   981  2087 -18.084 -18.023  -0.000 -16.799 -17.079 -17.474 -12.375 -11.997 -12.364  0.858 -11.297 -13.192  2.952 -11.930 -12.250  2.078 -12.752 -1.287  0.606 -12.527 -2.469 -3.119 
    ML    40    38 6    43     6    21    38   979  2085  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    21    38   978  2084 -10.887  -9.616  -1.639  -9.594  -0.575  -7.808 -5.012  1.959 -5.537 -4.102 
     D    42    38 6    43     6    18    35   975  2081  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    43    43 5    43     6    21    39   980  2086  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    21    39   980  2085  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      8    202 g c - -
    MP    45    44 6    49     6    23    39   979  2085  -4.393 -18.024  -0.070 -16.800 -17.080 -17.475 -12.298 -11.628 -12.247  0.563 -7.955 -5.709  1.978 -12.025 -12.254  2.686 -12.704 -0.376  1.147 -9.822 -0.018 -2.754 
    ML    46    44 6    49     6    20    37   977  2083  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    20    36   976  2082 -10.373  -9.102  -5.011  -9.081  -0.062  -7.294 -3.823 -3.482 -4.617  1.926 
     D    48    44 6    49     6    18    35   975  2080  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    49    49 5    49     6    22    38   978  2084 -10.465 -10.727  -0.003 -12.383 -13.159 -12.819  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    21    38   978  2084  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     10    201 G C - -
    MP    51    50 6    55     4    21    37   977  2083  -5.075 -17.520  -0.105  -4.635                 -12.345 -10.985 -5.454  1.824 -13.347 -12.846 -0.895 -12.831 -12.560  3.225 -12.841 -3.085  1.278 -12.090 -10.430 -11.129 
    ML    52    50 6    55     4    19    36   976  2082  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    19    35   975  2081  -8.381  -7.410  -5.277  -0.051                  1.951 -4.792 -4.248 -4.509 
     D    54    50 6    55     4    18    35   974  2080  -4.568  -4.250  -2.265  -0.520                 
    IL    55    55 5    55     4    20    37   977  2082  -1.237  -0.800  -9.339 -13.077                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    19    35   975  2081  -7.857  -7.213  -0.016                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     13      - U - - -
    ML    57    56 6    59     3    19    35   975  2081 -18.118  -0.005  -8.152                         -11.532 -5.316 -3.744  1.963 
     D    58    56 6    59     3    18    34   974  2080 -15.838  -0.001 -10.229                         
    IL    59    59 3    59     3    19    36   975  2081  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     14      - g - - -
    ML    60    59 3    62     2    18    34   974  2080 -18.876  -0.000                                  0.822 -2.123  0.957 -4.027 
     D    61    59 3    62     2    17    33   973  2079 -10.136  -0.001                                 
    IL    62    62 3    62     2    18    35   974  2080  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    17    33   973  2079                                                 
                                             [ BEGR   45 ]      -      - - - - -
     S    64    63 1    65     3     0     2   939  2044 -18.225  -0.000 -16.879                         
    IL    65    65 2    65     3     1     3   939  2045  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]     71      - u - - -
    ML    66    65 2    68     3     1     2   939  2044 -18.225  -0.889  -1.120                         -0.458 -0.933 -0.157  0.888 
     D    67    65 2    68     3     0     1   931  2037  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     2   949  2055  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]     72      - A - - -
    ML    69    68 3    71     3     1     2   949  2055  -0.937  -1.066 -15.990                          1.045 -4.139  0.022 -0.209 
     D    70    68 3    71     3     0     1   920  2025  -1.632  -0.562 -12.916                         
    IL    71    71 3    71     3     1     2   987  2093  -0.024  -6.338  -7.908                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    174      - U - - -
    ML    72    71 3    74     3     1     1    27    45  -6.612  -0.345  -2.303                         -1.028 -1.788 -0.145  1.211 
     D    73    71 3    74     3     0     0    25    44 -16.441  -2.229  -0.346                         
    IL    74    74 3    74     3     1     4    27    45  -6.194  -0.023  -8.894                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    176      - A - - -
    ML    75    74 3    77     3     1     4    26    44 -17.779  -0.000 -16.433                          1.517 -1.817 -2.582 -0.542 
     D    76    74 3    77     3     0     0    25    43 -17.734  -0.057  -4.680                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    177      - C - - -
    ML    78    77 3    80     5     1     3    25    43 -17.143  -0.013 -16.958  -6.757 -18.062         -1.896  1.107 -0.653 -0.086 
     D    79    77 3    80     5     0     0    23    40 -11.023  -6.867 -10.284  -8.659  -0.018         
    IL    80    80 3    80     5     1     1    27    44  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]    178    199 c g - -
    MP    81    80 3    85     6     2     4    24    42 -18.059  -4.804  -0.053 -16.774 -17.054 -17.449 -12.297 -11.075 -12.150  1.555 -9.868 -12.804  2.572 -12.552 -12.454  2.015 -4.233  1.211 -0.515 -12.078 -9.843 -11.040 
    ML    82    80 3    85     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    23    42 -12.750 -11.479  -7.388 -11.457  -0.012  -9.671 -7.434 -6.703 -8.407  1.993 
     D    84    80 3    85     6     0     0    22    40 -15.526 -14.224  -0.572 -10.704 -10.721  -1.618 
    IL    85    85 5    85     6     1     1    25    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    23    41  -9.143  -0.004 -12.654 -10.822 -11.928          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    179    197 C G - -
    MP    87    86 6    91     6     2     2    22    40  -6.484  -7.790  -0.023 -13.090 -17.065 -17.460 -4.239 -8.768 -12.366 -2.071 -1.781 -13.210  3.231 -11.884 -12.224  0.550 -12.737 -4.364  1.582 -12.548  0.350 -2.035 
    ML    88    86 6    91     6     1     1    22    41  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     1    22    41 -12.750  -0.026  -7.388 -11.457  -6.591  -9.671 -6.948  1.989 -7.406 -6.012 
     D    90    86 6    91     6     0     0    22    40 -13.918 -12.617  -8.414  -0.047  -9.113  -5.189 
    IL    91    91 5    91     6     1     1    21    39  -8.378  -8.641  -0.011 -10.296 -11.072 -10.732  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    21    39  -7.796  -0.010 -11.308  -9.475 -10.581          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    181    195 C G - -
    MP    93    92 6    97     6     2     2    20    38 -18.082 -18.021  -0.000 -16.798 -17.078 -17.473 -12.444 -2.787 -12.438  0.329 -11.297 -13.271  3.015 -11.953 -6.220  1.355 -12.807 -9.716  1.952 -12.624 -3.840 -11.018 
    ML    94    92 6    97     6     1     1    22    40 -10.827 -11.173  -4.434  -0.075 -11.023  -8.553 -5.510  1.971 -5.986 -4.616 
    MR    95    92 6    97     6     1     1    24    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    96    92 6    97     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    97    97 5    97     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    182    194 G C - -
    MP    99    98 6   103     6     2     2    18    36  -7.199  -7.282  -0.019 -16.798 -17.078 -17.473 -15.295 -5.304 -15.867  0.203 -4.837 -14.046 -1.319 -15.677 -13.993  3.839 -14.247 -10.541 -3.662 -14.367 -13.016 -14.667 
    ML   100    98 6   103     6     1     1    21    39 -10.784 -11.130  -0.038  -5.539 -10.980  -8.510 -4.872 -6.502  1.976 -5.610 
    MR   101    98 6   103     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   102    98 6   103     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   103   103 5   103     6     1     1    18    37  -7.692  -7.955  -0.017  -9.610 -10.386 -10.046  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    19    37  -6.748  -0.021 -10.259  -8.427  -9.533          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    184    192 G C - -
    MP   105   104 6   109     4     2     2    15    34 -17.316 -17.523  -0.000 -15.937                 -16.011 -6.104 -18.302 -3.422 -17.647 -13.809 -11.946 -17.772 -14.012  3.990 -14.205 -10.575 -12.309 -14.275 -14.395 -17.375 
    ML   106   104 6   109     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0    22    40  -4.568  -4.250  -2.265  -0.520                 
    IL   109   109 5   109     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    185      - U - - -
    ML   111   110 6   113     3     1     1    13    31 -18.225  -0.000 -16.879                         -15.536 -14.141 -17.134  2.000 
     D   112   110 6   113     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    186      - U - - -
    ML   114   113 3   116     3     1     1    12    30 -18.225  -0.000 -16.879                         -11.768 -5.235 -4.863  1.978 
     D   115   113 3   116     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    187      - C - - -
    ML   117   116 3   119     3     1     1    10    29 -18.225  -0.000 -16.879                         -14.138  1.983 -14.720 -4.458 
     D   118   116 3   119     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    188      - G - - -
    ML   120   119 3   122     3     1     1     9    27 -18.225  -0.000 -16.879                          0.642 -13.286  1.287 -13.129 
     D   121   119 3   122     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    189      - A - - -
    ML   123   122 3   125     3     1     1     8    26 -18.225  -0.000 -16.879                          2.000 -14.146 -13.412 -13.477 
     D   124   122 3   125     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    190      - a - - -
    ML   126   125 3   128     3     1     1     6    24 -18.225  -0.000 -13.605                          0.835 -0.389 -0.770 -0.208 
     D   127   125 3   128     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    191      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -6.747 -3.055 -12.390  1.952 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    63 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     7    19    65   104   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   182     7    19    65   104                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     5    26    40  -0.007 -16.217  -7.949 -10.326                 
                                             [ MATP   18 ]     15     36 G C - -
    MP   136   135 1   140     6     2     6    26    40  -6.679 -18.019  -0.039 -16.796  -5.898 -17.471 -4.604 -5.026 -5.543 -0.210 -12.994 -7.407 -0.250 -12.553 -12.301  3.775 -12.547 -1.626 -2.571 -11.717 -10.068 -6.656 
    ML   137   135 1   140     6     1     3    25    39  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     4    25    39 -11.601 -10.330  -0.536 -10.308  -1.710  -8.521 -5.740  1.976 -6.203 -4.848 
     D   139   135 1   140     6     0     2    22    36 -11.965 -10.663  -6.460  -7.142  -7.160  -0.038 
    IL   140   140 5   140     6     1     6    24    38  -8.197  -8.460  -6.378  -0.028 -10.892 -10.552  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     4    26    40  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     17     35 C G - -
    MP   142   141 6   146     6     2     7    24    38 -18.046 -17.985  -0.000 -16.761 -17.041 -17.436 -12.804 -12.536 -12.749 -1.253 -8.576 -13.506  3.781 -12.240 -12.629 -1.525 -7.388 -1.347 -0.303 -12.962 -1.887 -11.356 
    ML   143   141 6   146     6     1     5    23    37 -12.298 -12.644  -0.013  -7.053 -12.494 -10.024  1.993 -7.730 -7.017 -7.160 
    MR   144   141 6   146     6     1     3    22    36 -13.705 -12.434  -3.754 -12.412  -0.113 -10.626 -1.883  1.891 -7.195 -6.303 
     D   145   141 6   146     6     0     2    22    36 -11.965 -10.663  -0.186  -7.142  -7.160  -3.235 
    IL   146   146 5   146     6     1     3    25    38  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     3    24    38  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     18     34 g c - -
    MP   148   147 6   152     6     2     5    22    36 -18.063 -18.002  -0.032 -16.779  -5.744  -8.237 -12.253 -7.374 -12.184  1.604 -3.641 -12.926  2.402 -12.056 -12.242  2.652 -12.670 -3.129 -0.569 -12.230 -0.963 -10.901 
    ML   149   147 6   152     6     1     3    22    38  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   150   147 6   152     6     1     2    20    34 -13.599 -12.328  -8.237 -12.306  -3.708  -0.121 -4.846  1.108  0.572 -1.628 
     D   151   147 6   152     6     0     1    20    35  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   152   152 5   152     6     1     3    23    37  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     3    22    36  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     19     33 g a - -
    MP   154   153 6   158     4     2     3    20    34 -17.260 -17.467  -0.000 -15.881                  2.146 -15.370 -6.192 -2.251 -9.115 -14.550  0.660  0.762  2.913 -11.578 -3.667 -13.773 -2.057 -14.923 -3.754 -2.740 
    ML   155   153 6   158     4     1     2    22    38  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   156   153 6   158     4     1     2    20    34 -11.856  -0.524  -2.256  -3.396                 -1.700  0.338  0.653 -0.223 
     D   157   153 6   158     4     0     1    18    33 -11.798 -11.479  -0.284  -2.491                 
    IL   158   158 5   158     4     1     2    23    39  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     2    19    33  -6.763  -0.015  -9.463                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     20      - A - - -
    ML   160   159 6   162     3     1     1    18    32 -18.218  -0.091  -4.037                          1.951 -4.476 -4.805 -4.211 
     D   161   159 6   162     3     0     1    17    34 -12.037  -0.017  -6.428                         
    IL   162   162 3   162     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     21      - G - - -
    ML   163   162 3   165     3     1     3    17    31 -18.135  -0.000 -16.789                         -0.113 -2.240  1.428 -2.538 
     D   164   162 3   165     3     0     0    16    31 -15.601  -0.583  -1.589                         
    IL   165   165 3   165     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     22      - u - - -
    ML   166   165 3   168     3     1     2    16    29  -3.044  -0.186 -16.850                         -0.150 -0.762 -0.608  0.890 
     D   167   165 3   168     3     0     0    14    29 -14.014  -0.004  -8.406                         
    IL   168   168 3   168     3     1     1    16    30  -2.320  -0.323 -12.870                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     25      - G - - -
    ML   169   168 3   171     3     1     2    14    28 -18.225  -0.000 -16.879                         -3.406 -2.346  1.804 -2.205 
     D   170   168 3   171     3     0     0    16    35  -6.174  -1.687  -0.566                         
    IL   171   171 3   171     3     1     1    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     26      - G - - -
    ML   172   171 3   174     3     1     1    13    26 -18.225  -0.012  -6.897                         -1.515 -13.736  1.835 -3.593 
     D   173   171 3   174     3     0     0    15    34  -6.174  -1.687  -0.566                         
    IL   174   174 3   174     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     27      - U - - -
    ML   175   174 3   177     3     1     1    12    23  -1.331  -0.731 -16.867                         -1.586  0.000 -4.514  1.391 
     D   176   174 3   177     3     0     0     6    17 -12.761  -0.010  -7.152                         
    IL   177   177 3   177     3     1     1    11    23  -2.350  -0.315 -14.590                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     31      - a - - -
    ML   178   177 3   180     2     1     1     1     1       *   0.000                                  0.584 -1.936  0.082  0.240 
     D   179   177 3   180     2     0     0     0     0       *   0.000                                 
    IL   180   180 3   180     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    29 ]      -      - - - - -
     E   181   180 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   30 ]      -      - - - - -
     S   182   134 1   183     3     0     5    50    88 -18.225  -0.000 -16.879                         
    IL   183   183 2   183     3     1     1    52    90  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   31 ]     37      - a - - -
    ML   184   183 2   186     5     1     6    50    88 -17.158  -0.000 -16.973 -17.186 -18.077          0.985 -1.489  0.633 -3.140 
     D   185   183 2   186     5     0     0    48    86  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   186   186 3   186     5     1     1    50    88  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]     38     70 g u - -
    MP   187   186 3   191     6     2     7    49    87 -18.087 -18.026  -0.000 -16.803 -17.083 -17.478 -9.656 -6.989 -3.972  1.976 -4.508 -5.413  1.321 -0.490 -9.918  1.497 -2.897  2.079  0.191 -5.392 -4.833 -1.587 
    ML   188   186 3   191     6     1     1    47    85  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   189   186 3   191     6     1     1    47    85  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   190   186 3   191     6     0     0    43    81  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   191   191 5   191     6     1     1    48    86  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   192   192 6   192     5     1     1    48    86  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     39     69 c g - -
    MP   193   192 6   197     6     2     6    47    85  -7.284  -4.328  -0.083 -16.803 -17.083 -17.478 -12.373 -12.015 -12.365  1.511 -11.281 -8.949  2.807 -11.919 -12.244  1.357 -12.749  0.264  0.316 -9.241  0.071 -3.467 
    ML   194   192 6   197     6     1     1    45    83  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   195   192 6   197     6     1     1    44    83  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   196   192 6   197     6     0     0    41    79  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   197   197 5   197     6     1     4    46    84  -7.614  -7.877  -0.018  -9.532 -10.309  -9.969  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     5    46    84  -9.644  -0.003 -13.155 -11.323 -12.429          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     41     67 G C - -
    MP   199   198 6   203     6     2     4    45    83  -2.940 -18.026  -0.201 -16.803 -17.083 -17.478 -12.052 -5.742 -11.870  1.633 -13.000 -12.465  0.613 -0.078 -5.795  3.247 -12.554 -0.645 -2.109 -11.724 -5.951 -7.606 
    ML   200   198 6   203     6     1     1    42    81  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   201   198 6   203     6     1     1    42    80  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   202   198 6   203     6     0     0    39    77  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   203   203 5   203     6     1     3    44    82 -11.916  -0.696  -1.386 -13.834 -14.610 -14.270  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     3    43    82 -10.333  -0.002 -13.844 -12.012 -13.118          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     43     65 G C - -
    MP   205   204 6   209     6     2     2    42    81 -18.087 -18.026  -0.028 -16.803 -17.083  -5.727 -13.323 -11.776 -13.221 -1.347 -13.963 -13.448  1.032 -13.702 -13.225  3.678 -13.496 -1.091 -3.421 -12.980 -2.308 -12.148 
    ML   206   204 6   209     6     1     1    40    78  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   207   204 6   209     6     1     1    40    78  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   208   204 6   209     6     0     0    36    74  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   209   209 5   209     6     1     1    42    80  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1    41    80  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     44     64 c g - -
    MP   211   210 6   215     4     2     4    40    79  -1.756 -17.495  -0.506 -15.909                 -12.360 -3.943 -12.359  1.686 -8.745 -4.782  2.544 -11.878 -2.283  1.398 -12.731 -9.627  1.935 -12.542 -2.483 -10.937 
    ML   212   210 6   215     4     1     1    37    75  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   213   210 6   215     4     1     1    36    74  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   214   210 6   215     4     0     0    25    63 -11.814 -11.495  -9.511  -0.003                 
    IL   215   215 5   215     4     1     2    41    79  -1.427  -0.671 -12.502 -16.240                  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     3     1     1    39    77  -0.695 -11.878  -1.388                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     48      - C - - -
    ML   217   216 6   219     3     1     2    13    31 -17.691  -0.000 -16.345                         -4.147  1.620 -11.656 -0.201 
     D   218   216 6   219     3     0     0    11    30 -17.951 -13.464  -0.000                         
    IL   219   219 3   219     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     49      - U - - -
    ML   220   219 3   222     3     1     1    12    30 -17.691  -0.000 -16.345                         -7.986 -3.122 -5.188  1.946 
     D   221   219 3   222     3     0     0    11    29 -17.951  -0.000 -12.343                         
    IL   222   222 3   222     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     50      - u - - -
    ML   223   222 3   225     3     1     1    10    29 -18.225  -0.000 -16.879                         -0.215 -0.279 -0.097  0.463 
     D   224   222 3   225     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   225   225 3   225     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     51      - g - - -
    ML   226   225 3   228     3     1     1     9    27 -18.225  -0.000 -16.879                         -0.349 -0.284  0.401  0.102 
     D   227   225 3   228     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   228   228 3   228     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     52      - c - - -
    ML   229   228 3   231     3     1     1     8    26 -18.225  -0.000 -16.879                         -0.563  0.707 -0.075 -0.432 
     D   230   228 3   231     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   231   231 3   231     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     53      - A - - -
    ML   232   231 3   234     3     1     1     6    24 -18.225  -0.008  -7.421                          1.888 -2.068 -4.706 -5.456 
     D   233   231 3   234     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   234   234 3   234     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     54      - A - - -
    ML   235   234 3   237     2     1     1     1     1       *   0.000                                  1.877 -1.934 -4.321 -6.078 
     D   236   234 3   237     2     0     0     0     0       *   0.000                                 
    IL   237   237 3   237     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    44 ]      -      - - - - -
     E   238   237 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Cys
ACC   bact-Cys-r2-022416
LENG  75
MAXL  980
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 13:13:07 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Cys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Cys-r2-022416.sto
NSEQ  4651
EFFN  50.161514
CKSUM 744108839
STATS LOCAL MSV       -8.1211  0.71878
STATS LOCAL VITERBI   -9.3827  0.71878
STATS LOCAL FORWARD   -3.2653  0.71878
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.53752  1.29224  1.24518  1.50262
          1.38629  1.38629  1.38629  1.38629
          0.00427  6.15191  6.15191  1.46634  0.26236  0.00000        *
      1   2.43609  3.83016  0.17445  2.97846      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00427  6.15191  6.15191  1.46634  0.26236  1.09861  0.40547
      2   2.12238  2.38327  0.27765  3.49180      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00426  6.15388  6.15388  1.46634  0.26236  1.09861  0.40547
      3   2.54679  0.51301  1.73520  1.91998      3 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.00657  6.15549  5.42090  1.46634  0.26236  1.09861  0.40547
      4   2.50160  1.24465  0.63108  2.32289      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02229  3.91508  6.16252  0.76754  0.62391  1.40723  0.28080
      5   2.12363  0.78530  1.27736  1.92658      7 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.00422  6.16252  6.16252  1.46634  0.26236  1.10853  0.40054
      6   2.22578  1.39971  0.84532  1.53281      8 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.05095  3.04564  6.16326  0.08629  2.49289  1.31815  0.31147
      7   1.50998  3.05095  0.53551  1.92143     10 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.06558  3.77306  3.20670  0.17412  1.83383  1.31815  0.31147
      8   4.59099  4.09640  3.79569  0.05050     13 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00764  6.12411  5.21656  1.46634  0.26236  0.09545  2.39645
      9   0.84878  2.79306  0.72773  3.58186     14 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00885  6.16169  5.00579  1.46634  0.26236  0.59168  0.80609
     10   2.42264  2.76923  0.20276  3.43804     15 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.03000  4.47153  4.01045  0.33577  1.25453  0.81578  0.58392
     11   3.09972  0.24513  2.69879  2.25334     17 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00429  6.14684  6.14684  1.46634  0.26236  1.78199  0.18429
     12   1.68072  1.13006  0.95652  2.23943     18 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.02555  6.14883  3.76822  1.46634  0.26236  2.35514  0.09969
     13   1.26419  1.53644  0.77673  3.15872     19 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00437  6.12765  6.12765  1.46634  0.26236  0.23661  1.55731
     14   0.05277  4.05713  4.24251  3.92530     20 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.06434  6.15998  2.81001  1.46634  0.26236  0.47516  0.97229
     15   1.49416  2.84415  0.41096  2.91202     21 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00447  6.10525  6.10525  1.46634  0.26236  0.45389  1.00827
     16   1.43711  1.86807  1.78817  0.81939     22 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.12767  2.13948  6.14542  0.24971  1.50970  0.18020  1.80242
     17   3.20513  2.93501  0.16818  2.79504     25 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     18   2.43403  5.23340  0.12601  3.67411     26 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01228  6.16480  4.59507  1.46634  0.26236  1.09861  0.40547
     19   2.41266  1.40028  3.96180  0.43871     27 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.48329  0.96461  6.15677  0.22653  1.59600  0.34798  1.22456
     20   1.00806  2.47531  1.37200  1.21289     31 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.03572  4.18910  3.91575  0.25744  1.48293  1.09861  0.40547
     21   0.31291  4.79207  2.04826  2.02930     33 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.00429  6.14682  6.14682  1.46634  0.26236  0.19144  1.74735
     22   2.56881  0.99284  1.04462  1.60433     34 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01431  6.16480  4.41379  1.46634  0.26236  1.09861  0.40547
     23   2.49100  3.01931  0.22774  2.63098     35 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00426  6.15475  6.15475  1.46634  0.26236  0.36036  1.19544
     24   3.54355  0.23715  2.68754  2.17011     36 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00422  6.16407  6.16407  1.46634  0.26236  0.90970  0.51525
     25   0.73003  2.38012  0.96803  3.08492     37 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     26   1.41152  1.54231  0.93794  1.89108     38 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     27   1.75243  0.87003  1.46765  1.73024     39 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01039  4.79995  6.16480  0.45042  1.01435  1.09861  0.40547
     28   1.61802  1.92821  0.47760  3.32332     41 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.13770  2.06723  6.16480  0.03290  3.43066  1.09861  0.40547
     29   2.85223  2.09097  0.24628  3.29655     43 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02248  6.16480  3.90565  1.46634  0.26236  1.09861  0.40547
     30   1.62320  1.02728  1.70119  1.33831     44 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.18272  1.80266  6.14661  0.05130  2.99562  2.44885  0.09035
     31   3.52858  0.29504  4.75481  1.52538     48 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.33744  6.14661  1.25786  1.46634  0.26236  2.44885  0.09035
     32   4.24136  3.24723  4.26907  0.06963     49 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00598  5.81516  5.81516  1.46634  0.26236  0.01405  4.27223
     33   1.47265  1.58876  1.48486  1.07890     50 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     34   1.54796  1.59416  1.17207  1.29275     51 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     35   1.67786  0.96537  1.47670  1.58965     52 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     36   0.09731  2.78990  4.12405  4.19201     53 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00981  6.16480  4.87137  1.46634  0.26236  1.09861  0.40547
     37   0.10408  2.71068  3.96292  4.31631     54 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.35446  1.27047  4.03154  0.96441  0.47999  0.82837  0.57405
     38   1.37756  1.76592  0.97969  1.60271     64 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00429  6.14661  6.14661  1.46634  0.26236  0.18969  1.75570
     39   3.82461  0.29197  1.98095  2.37037     65 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.08456  2.53858  6.16480  0.05241  2.97478  1.09861  0.40547
     40   3.49040  0.55071  2.27762  1.23634     67 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.05315  3.00257  6.16480  0.08261  2.53462  1.09861  0.40547
     41   2.23371  1.81621  0.72807  1.39680     69 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     42   2.12871  1.68600  1.58887  0.71010     70 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     43   1.60619  1.96458  1.52156  0.81925     71 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.35885  6.16481  1.20591  1.46634  0.26236  1.09861  0.40547
     44   0.73547  2.98163  1.42439  1.47249     72 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.89277  0.53190  5.81196  4.09088  0.01687  0.01394  4.27969
     45   1.90865  2.40797  1.52562  0.60837    174 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.31025  4.52891  1.36280  0.35240  1.21403  1.09861  0.40547
     46   0.38075  2.48817  2.87668  1.73007    176 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00565  5.87199  5.87199  1.46634  0.26236  0.05552  2.91864
     47   2.44712  0.66358  1.87126  1.40845    177 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01315  6.15491  4.51555  1.46634  0.26236  2.03909  0.13943
     48   1.68646  1.09016  0.89253  2.67304    178 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00429  6.14606  6.14606  1.46634  0.26236  1.04016  0.43603
     49   3.23070  0.57853  2.19831  1.24218    179 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01503  4.35896  6.15285  0.30478  1.33669  0.26284  1.46474
     50   2.33331  0.73758  1.79549  1.35206    181 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     51   2.36143  3.24487  0.17007  3.76650    182 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01074  4.75848  6.16480  0.43395  1.04397  1.09861  0.40547
     52   4.40351  6.11189  0.01688  6.08091    184 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     53   6.80624  6.25839  7.50669  0.00358    185 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     54   4.68272  4.13065  4.32620  0.03931    186 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     55   5.99103  0.01896  6.25198  4.24384    187 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     56   0.92275  5.74310  0.51824  5.57257    188 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     57   0.00443  6.84312  6.34344  6.44013    189 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     58   0.85373  1.65645  1.88070  1.46586    190 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.00428  6.16480  6.13265  1.46634  0.26236  1.09861  0.40547
     59   4.58264  3.31966  5.29955  0.05275    191 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16474  6.16474  1.46634  0.26236  1.07729  0.41630
     60   5.97340  0.01929  5.96332  4.26967    192 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01357  4.80158  5.24813  0.45107  1.01320  1.09861  0.40547
     61   3.87020  0.18046  3.19929  2.26846    194 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00433  6.16164  6.11524  1.46634  0.26236  1.50429  0.25125
     62   1.40539  1.78550  0.71217  2.33889    195 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01740  4.19059  6.16154  0.25858  1.47904  1.46839  0.26175
     63   1.53012  2.24336  0.48223  2.81368    197 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04557  3.33172  4.73070  0.11412  2.22701  1.50429  0.25125
     64   2.76631  1.27975  1.07103  1.15093    199 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.03333  3.48476  6.15491  0.13316  2.08207  0.30150  1.34595
     65   1.95665  0.56580  2.94103  1.43568    201 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     66   1.90434  0.95965  1.19173  1.80573    202 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     67   2.11786  1.37846  0.74771  1.86889    203 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02224  3.91736  6.16480  0.19940  1.71050  1.09861  0.40547
     68   2.60226  0.72234  1.20385  1.96438    205 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     69   1.98841  1.76559  0.49860  2.46957    206 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00421  6.16480  6.16480  1.46634  0.26236  1.09861  0.40547
     70   3.63098  0.34771  2.34166  1.76588    207 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01227  4.59581  6.16480  0.37456  1.16344  1.09861  0.40547
     71   3.04812  0.20350  3.59700  2.21388    209 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01993  4.03836  6.16480  0.62523  0.76601  1.09861  0.40547
     72   2.36263  3.87654  2.22211  0.25267    212 U - - :
          1.38629  1.38629  1.38629  1.38629
          0.13673  5.88691  2.07928  1.46634  0.26236  1.09861  0.40547
     73   5.91531  0.00980  6.22805  5.28318    213 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.00634  5.75652  5.75652  1.46634  0.26236  3.85107  0.02149
     74   5.91531  0.00980  6.22805  5.28318    214 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.00634  5.75652  5.75652  1.46634  0.26236  3.85107  0.02149
     75   0.00662  6.41611  5.94370  6.05539    215 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.00318  5.75335        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-fMet
ACC      bact-fMet-r2-022416
STATES   245
NODES    66
CLEN     77
W        264
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 18:34:08 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-fMet-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-fMet-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-fMet-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     8454
EFFN     8454.000000
CKSUM    4201036437
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -7.9084 0.71912
ECMLC    0.61387    -9.21750     1.31711     1600000      772181  0.001554
ECMGC    0.33840   -33.75687   -19.98687     1600000       42242  0.009469
ECMLI    0.58062    -9.57882     1.42596     1600000      714711  0.001679
ECMGI    0.34864   -30.94695   -17.78915     1600000       39292  0.010180
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     0     1   264   510 -17.971 -19.217  -0.444  -1.916                 
    IL     1     1 2     1     4    13    34   266   511  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    13    35   266   512  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    199 - A - -
    MR     3     2 3     5     3    16    35   265   511 -18.936  -0.000 -17.253                          2.000 -14.562 -13.833 -13.893 
     D     4     2 3     5     3    11    31   262   507 -18.558 -13.736  -0.000                         
    IR     5     5 3     5     3    13    35   265   511  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    198 - C - -
    MR     6     5 3     8     3    15    34   264   510  -7.090  -0.016  -8.012                         -15.677  2.000 -16.909 -13.754 
     D     7     5 3     8     3    11    31   262   507 -18.558 -13.736  -0.000                         
    IR     8     8 3     8     3    16    34   264   510  -7.162  -0.012  -9.401                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    196 - C - -
    MR     9     8 3    11     3    15    33   263   509  -7.084  -0.011 -17.248                         -15.671  2.000 -16.902 -13.749 
     D    10     8 3    11     3    11    31   262   507 -18.574  -0.299  -2.416                         
    IR    11    11 3    11     3    14    33   263   509  -7.163  -0.012  -9.401                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    194 - A - -
    MR    12    11 3    14     5    14    32   262   508  -8.454  -0.218  -5.873  -3.052 -18.865          1.951 -6.669 -3.353 -5.276 
     D    13    11 3    14     5    10    29   260   506  -4.109  -1.922 -11.913  -0.688  -4.135         
    IR    14    14 3    14     5    13    31   261   507  -7.393  -1.033 -10.904  -0.989 -10.177          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    192 C A - -
    MP    15    14 3    19     6    15    31   261   507 -18.684 -18.623  -0.041 -17.399  -5.164 -18.074 -0.928 -15.192 -1.767 -7.163  3.358 -15.407 -9.332  1.262 -10.586 -11.620 -15.263 -3.674  1.271 -15.657 -5.155 -13.890 
    ML    16    14 3    19     6    11    31   260   506 -13.883 -14.229  -8.943  -0.004 -14.079 -11.608 -7.722 -9.496  1.997 -8.483 
    MR    17    14 3    19     6    12    30   260   506 -17.608 -16.337  -0.118 -16.316  -3.677 -14.529 -0.058  0.330 -9.654  0.833 
     D    18    14 3    19     6     8    25   259   505 -14.544 -13.242  -0.030  -9.721  -9.739  -5.814 
    IL    19    19 5    19     6     9    25   260   506  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5     9    25   260   506  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    191 G C - -
    MP    21    20 6    25     6    15    30   259   505  -7.319 -18.812  -0.038 -17.588  -5.675 -18.263 -16.698 -2.351 -18.615 -2.966 -18.386 -14.630 -12.731 -18.234 -14.794  3.934 -14.999 -1.342 -13.081 -15.084 -15.160 -17.530 
    ML    22    20 6    25     6    11    30   259   505 -13.883  -0.007  -8.943  -8.638 -14.079 -11.608 -10.009 -8.867 -11.300  1.999 
    MR    23    20 6    25     6    12    26   256   502 -15.517 -14.246  -2.783 -14.224  -0.227 -12.438 -1.715  1.123 -7.482  0.596 
     D    24    20 6    25     6     7    19   252   498  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    25    25 5    25     6    11    29   258   504  -8.347  -8.610  -0.011 -10.265 -11.041 -10.702  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    11    29   258   504  -8.892  -0.005 -12.403 -10.570 -11.676          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      4    189 C G - -
    MP    27    26 6    31     6    14    28   257   503  -5.090 -18.816  -0.073 -17.592  -5.644 -18.267 -15.935 -16.217 -15.253 -12.454 -7.729 -15.397  3.937 -14.518 -15.356 -12.426 -0.808 -14.621 -3.724 -15.769 -4.983 -14.158 
    ML    28    26 6    31     6     9    23   255   501  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    29    26 6    31     6    12    25   255   501  -1.875 -14.719  -2.977 -14.697  -0.737 -12.911 -9.708 -10.741  1.545  0.112 
     D    30    26 6    31     6     7    19   251   496  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    31    31 5    31     6    12    28   256   502 -11.116  -1.643  -0.558 -13.034 -13.810 -13.470  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    11    28   256   502  -8.600  -0.006 -12.111 -10.278 -11.384          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      6    187 G C - -
    MP    33    32 6    37     6    13    27   255   501  -5.545  -7.365  -0.085 -17.593  -5.070 -18.268 -16.825 -13.433 -19.233  1.316 -18.448 -4.436 -12.736 -18.652 -14.803  3.743 -5.400 -11.369 -4.351 -15.060 -15.190 -18.369 
    ML    34    32 6    37     6     8    23   253   499  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    11    23   252   498 -15.981 -14.710  -9.871 -14.688  -0.002 -12.902 -10.951  1.999 -11.650 -9.564 
     D    36    32 6    37     6     7    19   250   496  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    37    37 5    37     6    11    26   254   500 -10.107 -10.370  -0.003 -12.025 -12.801 -12.461  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    10    26   254   500  -7.432  -0.013 -10.943  -9.111 -10.217          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      8    185 G C - -
    MP    39    38 6    43     6    14    25   253   499  -5.953  -6.506  -0.040 -17.549 -13.614 -18.224 -15.315 -13.487 -15.662 -2.606 -17.532 -15.871 -2.263 -15.681 -14.680  3.934 -15.171 -1.660 -12.745 -15.742 -14.699 -5.267 
    ML    40    38 6    43     6     8    22   252   497  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    10    22   251   497 -16.649 -15.378 -11.287 -15.356  -0.001 -13.570 -11.801  2.000 -12.584 -10.299 
     D    42    38 6    43     6     7    19   249   495  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    43    43 5    43     6    11    25   253   499  -9.658  -0.298  -2.439 -11.576 -12.352 -12.013  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    11    24   253   498  -1.506  -0.628 -13.488 -11.656 -12.762          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]     10    182 G C - -
    MP    45    44 6    49     6    12    23   251   497  -7.322  -7.391  -0.033  -6.591 -17.829 -18.224 -13.597 -12.082 -13.477  0.064 -14.581 -3.893 -0.444 -14.111 -13.631  3.799 -6.472 -3.533 -9.916 -13.234 -2.961 -6.774 
    ML    46    44 6    49     6     8    21   250   496  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6     9    21   250   496 -16.650 -15.379  -0.828 -15.357  -1.196 -13.571 -11.802  2.000 -12.586 -10.300 
     D    48    44 6    49     6     7    18   249   494  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    49    49 5    49     6    10    22   250   496  -8.306  -8.569  -0.011 -10.224 -11.000 -10.660  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    10    22   250   496  -7.364  -0.014 -10.875  -9.043 -10.149          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     12    180 G C - -
    MP    51    50 6    55     4    10    21   249   495  -3.984 -18.321  -0.094 -16.736                 -13.412 -8.607 -13.348  2.213 -14.248 -14.003 -10.103 -6.402 -5.861  3.432 -13.765 -1.018 -4.447 -13.415 -11.994 -12.405 
    ML    52    50 6    55     4     9    21   250   496  -0.161 -10.399  -3.277  -9.129                 -6.689  1.857 -1.495 -6.193 
    MR    53    50 6    55     4     8    20   249   495  -1.916 -12.511  -1.294  -1.613                 -1.268  1.840 -9.178 -8.204 
     D    54    50 6    55     4     6    18   248   494  -4.568  -4.250  -2.265  -0.520                 
    IL    55    55 5    55     4     8    20   249   495  -1.095  -4.080  -1.164  -5.238                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3     9    20   248   494  -6.960  -0.013  -9.660                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     16      - U - - -
    ML    57    56 6    59     3     8    19   247   493  -5.340  -0.038  -9.354                         -6.554 -3.541 -7.356  1.962 
     D    58    56 6    59     3     6    18   249   495  -0.571  -9.943  -1.619                         
    IL    59    59 3    59     3     8    20   251   496  -0.396  -2.058 -13.676                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     22      - G - - -
    ML    60    59 3    62     2     7    18   246   492 -19.734  -0.000                                  0.112 -14.620  1.545 -14.150 
     D    61    59 3    62     2     6    17   245   491 -11.587  -0.000                                 
    IL    62    62 3    62     2     7    18   246   492  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64     6    17   245   491                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     0     5   211   457 -19.087  -0.003  -8.834                         
    IL    65    65 2    65     3     1     6   212   458  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    107      - A - - -
    ML    66    65 2    68     3     1     6   211   457  -4.611  -0.060 -17.738                          1.984 -14.957 -4.487 -14.325 
     D    67    65 2    68     3     0     3   209   455 -11.700  -0.022  -6.092                         
    IL    68    68 3    68     3     1     6   221   466  -0.193  -2.997 -14.867                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    116      - G - - -
    ML    69    68 3    71     3     1     5   209   455  -3.224  -0.163 -17.741                         -2.878 -3.691  1.903 -4.390 
     D    70    68 3    71     3     0     1   181   427  -6.174  -1.687  -0.566                         
    IL    71    71 3    71     3     1     4   238   484  -0.108  -3.975  -6.862                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    137      - G - - -
    ML    72    71 3    74     3     1     5   151   326 -19.068  -0.002  -9.481                         -1.749 -15.349  1.888 -14.334 
     D    73    71 3    74     3     0     1   144   319 -14.217  -9.730  -0.002                         
    IL    74    74 3    74     3     1     3   152   326  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    138      - U - - -
    ML    75    74 3    77     3     1     4   150   325 -19.066  -0.011  -7.025                         -4.981 -0.995 -5.658  1.785 
     D    76    74 3    77     3     0     1   144   319 -14.365  -3.347  -0.149                         
    IL    77    77 3    77     3     1     3   151   325  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    139      - C - - -
    ML    78    77 3    80     5     1     5   149   324  -5.190  -0.040 -17.806 -18.018 -18.909         -5.193  1.958 -13.560 -3.539 
     D    79    77 3    80     5     0     1   143   318 -12.846  -8.690  -0.678  -1.428 -10.395         
    IL    80    80 3    80     5     1     3   149   324  -9.612  -0.003 -11.291 -13.123 -12.397          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    141    178 G C - -
    MP    81    80 3    85     6     2     5   148   323 -18.919 -18.858  -0.000 -17.634 -17.914 -18.309 -15.162 -5.689 -15.365 -0.077 -16.609 -14.873 -2.556 -15.718 -14.534  3.621 -14.858  1.207 -2.013 -14.770 -13.663 -14.190 
    ML    82    80 3    85     6     1     2   147   322 -13.538 -13.884  -0.006  -8.293 -13.734 -11.263 -7.394 -9.167  1.996 -8.156 
    MR    83    80 3    85     6     1     2   113   287 -13.329 -12.058  -7.967 -12.036  -0.008 -10.250  1.995 -8.202 -7.465 -7.596 
     D    84    80 3    85     6     0     0   161   335  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1   151   325  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1   149   323  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    142    177 c g - -
    MP    87    86 6    91     6     2     3   146   321  -3.106 -11.785  -0.202  -9.365  -6.284 -18.328 -13.235 -12.936 -13.235  0.140 -9.055 -14.079  2.998 -12.754 -13.093 -0.127 -13.607 -1.168  0.716 -9.622  1.958 -5.896 
    ML    88    86 6    91     6     1     1   162   336  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     2   107   282 -13.329 -12.058  -7.967 -12.036  -0.008 -10.250 -7.613  1.993 -8.091 -6.624 
     D    90    86 6    91     6     0     0   162   337  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    91    91 5    91     6     1     3   164   339 -12.599  -0.531  -1.700 -14.517 -15.293 -14.954  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     2   167   341 -11.185  -7.617  -0.008 -12.863 -13.969          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    144    175 A U - -
    MP    93    92 6    97     6     2     4    86   261 -18.794 -18.733  -0.020 -17.509  -6.201 -18.184 -10.577 -7.423 -12.768  3.113 -12.723 -13.441  1.458 -12.958 -12.987  1.608 -13.341 -3.645  0.053 -5.339 -1.351 -6.767 
    ML    94    92 6    97     6     1     1   166   341 -16.205 -16.551  -5.730 -10.959 -16.401  -0.028 -10.011 -11.749  1.973 -3.765 
    MR    95    92 6    97     6     1     2    96   271 -14.743 -13.472  -0.676 -13.450  -1.421 -11.663 -10.440 -9.241 -11.791  1.999 
     D    96    92 6    97     6     0     0   163   338  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    97    97 5    97     6     1     1   139   313  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1   135   310  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    145    174 G C - -
    MP    99    98 6   103     6     2     3    84   258  -7.331  -7.385  -0.037 -17.513  -6.273 -18.187 -16.693 -2.142 -18.837 -0.560 -18.239 -6.251 -2.014 -18.463 -7.683  3.882 -14.899 -11.273 -4.206 -5.241 -15.007 -17.985 
    ML   100    98 6   103     6     1     1   145   319  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     2    93   267 -14.705 -13.434  -9.342 -13.412  -0.003 -11.625 -10.391 -9.198 -11.735  1.999 
     D   102    98 6   103     6     0     0   165   340 -19.325 -18.023 -13.820 -14.503 -14.520  -0.000 
    IL   103   103 5   103     6     1     2    99   274  -8.261  -8.524  -0.012 -10.179 -10.955 -10.615  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1   102   276  -7.335  -0.014 -10.846  -9.014 -10.120          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    147    172 G C - -
    MP   105   104 6   109     4     2     2    81   255 -13.169 -18.214  -0.000 -16.629                 -16.761 -10.921 -19.357 -10.830 -18.366 -11.078 -12.637 -18.689 -14.705  4.000 -14.892 -11.275 -13.008 -11.117 -15.098 -18.614 
    ML   106   104 6   109     4     1     1   142   316  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    78   253 -13.396 -12.425 -10.292  -0.002                 -9.773  1.603 -10.655 -0.058 
     D   108   104 6   109     4     0     0   165   340  -0.001 -14.428 -12.444 -10.699                 
    IL   109   109 5   109     4     1     1   165   340  -0.152  -3.322 -12.510 -17.890                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    64   128  -0.415  -1.999 -14.834                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    158      - U - - -
    ML   111   110 6   113     3     1     1    27    54 -19.041  -0.000 -17.695                         -12.946 -4.827 -6.502  1.983 
     D   112   110 6   113     3     0     0    25    51  -9.933  -1.436  -0.668                         
    IL   113   113 3   113     3     1     1    28    54  -1.660  -0.656  -4.360                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    160      - U - - -
    ML   114   113 3   116     3     1     1    26    53 -19.058  -0.000 -17.712                         -16.287 -6.377 -17.815  1.996 
     D   115   113 3   116     3     0     0    15    42 -14.849 -10.362  -0.001                         
    IL   116   116 3   116     3     1     1    27    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    161      - C - - -
    ML   117   116 3   119     3     1     1    25    52  -3.617  -0.123 -17.712                         -13.771  1.982 -4.313 -13.115 
     D   118   116 3   119     3     0     0    13    39 -14.849 -10.362  -0.001                         
    IL   119   119 3   119     3     1     1    28    54  -1.000  -1.000 -13.835                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    164      - A - - -
    ML   120   119 3   122     3     1     1     8    27 -19.058  -0.001 -10.413                          1.423 -14.000  0.399 -13.916 
     D   121   119 3   122     3     0     0    10    28 -14.849 -10.362  -0.001                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    165      - A - - -
    ML   123   122 3   125     3     1     1     7    25 -19.057  -0.000 -17.711                          1.992 -6.119 -14.181 -7.050 
     D   124   122 3   125     3     0     0     9    27 -14.900  -4.816  -0.052                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    166      - A - - -
    ML   126   125 3   128     3     1     1     5    24 -19.058  -0.000 -17.712                          1.752 -2.452 -1.570 -3.169 
     D   127   125 3   128     3     0     0     7    26 -14.849  -0.697  -1.384                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    167      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -16.193 -4.024 -17.639  1.978 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     0     2   110   210   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     0     2   110   210                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     2    85   184  -0.084  -5.332  -4.985 -17.126                 
                                             [ MATP   18 ]     23     59 G C - -
    MP   136   135 1   140     6     2     3    83   183 -18.864 -18.804  -0.083  -6.612  -4.449 -18.255 -2.631 -13.459 -16.816 -10.558 -18.017 -14.983 -12.719 -1.532 -14.757  3.940 -15.067 -2.800 -12.954 -15.301 -14.979 -15.478 
    ML   137   135 1   140     6     1     2    95   195 -14.496 -14.842  -9.556  -0.002 -14.692 -12.221  1.998 -9.783 -9.018 -9.127 
    MR   138   135 1   140     6     1     1    91   191 -15.377 -14.106 -10.015 -14.084  -0.021  -6.261 -9.518 -4.060 -10.391  1.977 
     D   139   135 1   140     6     0     0    81   181  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1    85   184  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1    83   183  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     24     58 A U - -
    MP   142   141 6   146     6     2     5    79   179 -18.781 -18.721  -0.046  -4.985 -17.777 -18.172 -14.982 -13.754 -7.999  3.924 -15.436 -17.048 -2.052 -14.914 -14.697 -1.305 -15.279 -11.070 -2.545 -16.174 -13.028 -13.701 
    ML   143   141 6   146     6     1     2    94   194 -14.968 -15.314 -10.028  -0.002 -15.164 -12.693 -9.530  1.531  0.146 -8.647 
    MR   144   141 6   146     6     1     1    90   190 -16.611 -15.340  -4.250 -15.318  -0.570  -1.868 -8.854 -2.755  1.379  0.320 
     D   145   141 6   146     6     0     0    70   170 -11.919 -10.617  -6.415  -7.097  -7.114  -0.040 
    IL   146   146 5   146     6     1     1    82   182  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1    81   181  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     25     57 G C - -
    MP   148   147 6   152     6     2     3    71   171 -18.741 -18.681  -0.030 -17.457  -5.610 -18.132 -16.564 -2.850 -18.470 -2.768 -18.253 -14.501 -12.600 -18.092 -14.663  3.969 -14.868 -5.881 -4.698 -14.954 -15.028 -17.380 
    ML   149   147 6   152     6     1     2    93   193 -15.827 -16.174 -10.888  -0.001 -16.023 -13.553  0.330 -8.431  0.667  0.205 
    MR   150   147 6   152     6     1     2    91   191 -16.042 -14.771 -10.680 -14.749  -0.001 -12.963  1.158  0.821 -10.901 -9.362 
     D   151   147 6   152     6     0     0    52   152 -17.388 -16.086 -11.883 -12.566 -12.583  -0.001 
    IL   152   152 5   152     6     1     1    81   180  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     1    79   179  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     26     56 C G - -
    MP   154   153 6   158     4     2     3    47   131 -17.941 -18.148  -0.000 -16.562                 -15.769 -16.049 -15.087 -1.469 -0.625 -15.232  3.826 -14.353 -15.190 -1.766 -15.311 -14.449 -4.424 -15.603 -4.179 -1.269 
    ML   155   153 6   158     4     1     2    92   192  -1.337  -2.700  -1.152 -11.823                  0.833 -0.659  0.663 -9.249 
    MR   156   153 6   158     4     1     1    90   190  -1.842  -1.281  -7.417  -1.720                 -11.589 -10.747  0.736  1.222 
     D   157   153 6   158     4     0     0    49   148 -12.810 -12.492 -10.507  -0.001                 
    IL   158   158 5   158     4     1     2    96   196  -0.267 -13.784  -2.568 -16.270                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     1    61   120  -0.449  -3.853  -2.333                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     34      - A - - -
    ML   160   159 6   162     3     1     3    45   101 -18.983  -0.000 -17.637                          1.994 -6.979 -14.127 -6.979 
     D   161   159 6   162     3     0     0    44   100 -16.657  -4.453  -0.067                         
    IL   162   162 3   162     3     1     1    46   102  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     35      - G - - -
    ML   163   162 3   165     3     1     2    44   100 -18.988  -0.000 -17.642                         -1.564 -5.297  1.862 -14.105 
     D   164   162 3   165     3     0     0    44   100  -1.699  -2.508  -0.954                         
    IL   165   165 3   165     3     1     2    46   102  -1.002  -0.999 -11.872                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     38      - C - - -
    ML   166   165 3   168     3     1     1    43    99 -19.037  -0.357  -2.189                         -2.416  1.158 -6.715  0.652 
     D   167   165 3   168     3     0     0    43    99 -15.637  -0.001 -10.029                         
    IL   168   168 3   168     3     1     1    44   100  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     39      - C - - -
    ML   169   168 3   171     3     1     1    43    99  -7.071  -0.357  -2.239                         -1.162  1.023 -12.107  0.605 
     D   170   168 3   171     3     0     0    41    97 -18.267 -13.780  -0.000                         
    IL   171   171 3   171     3     1     1    43    99  -6.411  -0.020  -9.112                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     41      - c - - -
    ML   172   171 3   174     3     1     1    42    98 -18.400  -0.000 -17.054                         -1.598  0.886 -2.153  0.675 
     D   173   171 3   174     3     0     0    41    97 -19.105  -0.123  -3.614                         
    IL   174   174 3   174     3     1     1    42    98  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     42      - G - - -
    ML   175   174 3   177     3     1     1    41    97 -19.042  -0.000 -17.696                         -5.728 -3.065  1.949 -14.297 
     D   176   174 3   177     3     0     0    19    75 -15.492 -11.005  -0.001                         
    IL   177   177 3   177     3     1     1    41    97  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     43      - G - - -
    ML   178   177 3   180     3     1     1    40    96  -5.064  -0.044 -17.696                         -5.728 -15.339  1.993 -14.311 
     D   179   177 3   180     3     0     0    17    73 -15.492 -11.005  -0.001                         
    IL   180   180 3   180     3     1     1    49   105  -0.475  -9.867  -1.840                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     48      - U - - -
    ML   181   180 3   183     3     1     1     9    17  -3.013  -0.191 -17.652                         -3.154 -1.118 -5.280  1.766 
     D   182   180 3   183     3     0     0     4    12 -16.445 -11.958  -0.000                         
    IL   183   183 3   183     3     1     1     9    17  -3.272  -0.158 -13.537                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     51      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.934 -6.091 -3.638 -3.587 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     0    90   188 -19.087  -0.130  -3.533                         
    IL   189   189 2   189     3     1     1    91   189  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     60      - G - - -
    ML   190   189 2   192     5     1     1    90   188 -17.889  -0.065 -17.705  -4.512 -18.809         -2.259 -14.781  1.875 -3.030 
     D   191   189 2   192     5     0     0    75   173 -14.929  -3.808 -14.191 -12.566  -0.107         
    IL   192   192 3   192     5     1     1    90   188  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     61    106 U A - -
    MP   193   192 3   197     6     2     2    89   187 -18.763  -6.916  -0.012 -17.479 -17.759 -18.154 -15.248 -15.276 -14.792 -3.340 -13.270 -15.101  2.042 -14.124 -8.304 -1.460 -15.055 -13.213  3.441 -3.976 -1.011 -13.597 
    ML   194   192 3   197     6     1     1    87   185  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   195   192 3   197     6     1     1    86   183 -15.719 -14.448  -7.751 -14.426  -0.007 -12.639  0.871 -9.498 -10.872  1.117 
     D   196   192 3   197     6     0     0    59   144 -19.332 -18.030 -13.827 -14.509 -14.527  -0.000 
    IL   197   197 5   197     6     1     1    88   186  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     1    88   186  -7.758  -0.010 -11.269  -9.437 -10.543          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     62    104 C G - -
    MP   199   198 6   203     6     2     2    87   185 -18.764 -18.703  -0.041 -17.479  -5.148 -18.154 -15.589 -15.751 -15.005 -2.988 -6.398 -15.215  3.482 -14.298 -15.078 -0.343 -15.245 -13.904  1.897 -15.478 -2.506 -13.868 
    ML   200   198 6   203     6     1     1    85   182  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   201   198 6   203     6     1     1    85   182 -15.713 -14.442  -0.879 -14.420  -1.134 -12.634 -11.066  1.123  0.865 -9.499 
     D   202   198 6   203     6     0     0    59   142 -19.332 -18.030 -13.827 -14.509 -14.527  -0.000 
    IL   203   203 5   203     6     1     1    86   184  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     1    86   184  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     63    103 G C - -
    MP   205   204 6   209     6     2     2    85   183 -18.759 -18.698  -0.019 -17.474  -6.237 -18.149 -15.586 -13.378 -16.113  2.175 -17.692 -15.209 -12.607 -16.100 -14.631  3.469 -15.018 -11.016 -1.274 -15.382 -14.757 -14.743 
    ML   206   204 6   209     6     1     1    82   180  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   207   204 6   209     6     1     1    80   178 -15.821 -14.550  -1.244 -14.528  -0.792 -12.742 -10.679  1.207 -11.892  0.757 
     D   208   204 6   209     6     0     0    59   140 -19.332 -18.030 -13.827 -14.509 -14.527  -0.000 
    IL   209   209 5   209     6     1     1    84   182  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1    84   182  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     64    102 G C - -
    MP   211   210 6   215     6     2     2    84   181 -18.769  -3.265  -0.160 -10.263 -17.765 -18.160 -16.752 -13.324 -19.342 -10.821 -18.357 -3.200 -12.628 -18.677 -14.696  3.948 -1.347 -4.078 -12.999 -14.944 -15.089 -18.595 
    ML   212   210 6   215     6     1     1    80   177  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   213   210 6   215     6     1     1    62   150 -15.584 -14.313 -10.222 -14.291  -0.002 -12.505 -10.226  1.446 -11.312  0.350 
     D   214   210 6   215     6     0     0    59   139 -19.332 -18.030 -13.827 -14.509 -14.527  -0.000 
    IL   215   215 5   215     6     1     1    82   179  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     1    71   168 -11.382  -3.452 -14.893 -13.061  -0.139          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]     65    100 G C - -
    MP   217   216 6   221     4     2     2    82   180  -4.010  -6.746  -0.109  -9.252                 -14.328 -2.294 -14.355 -1.753 -15.414 -14.028 -1.208 -14.922 -13.938  3.849 -14.190 -2.022 -3.627 -13.778 -1.585 -13.290 
    ML   218   216 6   221     4     1     1    73   171  -6.662  -6.844  -3.411  -0.172                 -4.041  1.921 -4.722 -3.118 
    MR   219   216 6   221     4     1     1    61   148 -13.609 -12.638 -10.506  -0.001                  0.346  1.447 -10.956 -9.066 
     D   220   216 6   221     4     0     0    59   138 -15.784 -15.465 -13.480  -0.000                 
    IL   221   221 5   221     4     1     1    94   192  -1.021  -1.073 -11.123  -4.991                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     1    92   190  -0.272  -5.382  -2.758                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     70      - C - - -
    ML   223   222 6   225     3     1     1    56   124  -6.599  -0.030  -6.651                         -15.705  2.000 -16.940 -13.781 
     D   224   222 6   225     3     0     0    59   127 -18.517 -14.030  -0.000                         
    IL   225   225 3   225     3     1     1    60   128  -6.797  -6.153  -0.034                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     72      - U - - -
    ML   226   225 3   228     3     1     1    55   123  -3.815  -0.162  -4.826                         -15.950 -14.555 -17.549  2.000 
     D   227   225 3   228     3     0     0    59   127 -18.601 -14.114  -0.000                         
    IL   228   228 3   228     3     1     1    63   130  -0.708 -10.242  -1.369                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     78      - u - - -
    ML   229   228 3   231     3     1     1    48   115 -18.476  -0.048  -4.922                          0.001 -0.001 -0.001  0.001 
     D   230   228 3   231     3     0     0    59   127 -18.971 -14.484  -0.000                         
    IL   231   231 3   231     3     1     1    52   120  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     79      - u - - -
    ML   232   231 3   234     3     1     1    19    87 -18.428  -0.000 -17.082                          0.001 -0.001 -0.001  0.001 
     D   233   231 3   234     3     0     0    59   127 -19.058 -14.571  -0.000                         
    IL   234   234 3   234     3     1     1    52   120  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     80      - u - - -
    ML   235   234 3   237     3     1     1    16    83 -18.428  -0.000 -17.082                          0.001 -0.001 -0.001  0.001 
     D   236   234 3   237     3     0     0    59   127  -0.974 -14.571  -1.027                         
    IL   237   237 3   237     3     1     1    62   129  -0.393  -2.067 -16.127                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     88      - A - - -
    ML   238   237 3   240     3     1     1     7    33 -18.801  -0.000 -17.455                          2.000 -14.719 -13.992 -14.050 
     D   239   237 3   240     3     0     0    22    49  -2.409 -13.545  -0.301                         
    IL   240   240 3   240     3     1     1    25    51  -1.001  -0.999 -12.601                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     91      - A - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                  1.981 -4.244 -14.098 -14.090 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-fMet
ACC   bact-fMet-r2-022416
LENG  77
MAXL  251
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 18:34:08 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-fMet-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-fMet-r2-022416.sto
NSEQ  8454
EFFN  3.575658
CKSUM 4201036437
STATS LOCAL MSV       -8.5350  0.71912
STATS LOCAL VITERBI   -9.6296  0.71912
STATS LOCAL FORWARD   -3.1679  0.71912
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.49835  1.29204  1.23090  1.56178
          1.38629  1.38629  1.38629  1.38629
          0.03229  4.14222  4.14222  1.46634  0.26236  0.00000        *
      1   1.65687  1.08631  1.65437  1.27086      1 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.05086  4.14222  3.39035  1.46634  0.26236  1.09861  0.40547
      2   2.48378  3.35934  0.17305  3.20104      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04754  3.97560  3.58783  1.18013  0.36707  0.92304  0.50635
      3   3.79582  0.11292  3.46378  2.93738      4 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.06429  3.37335  3.57590  0.70594  0.68052  1.47712  0.25915
      4   1.89587  2.79894  0.32781  2.68186      6 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.06622  3.53308  3.35632  0.81628  0.58353  1.66757  0.20912
      5   2.06415  2.70318  0.30897  2.63282      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04177  3.65585  4.19485  0.92230  0.50684  1.89727  0.16249
      6   1.78524  2.23140  0.48514  2.21407     10 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03483  3.95227  4.19816  1.18660  0.36421  0.64317  0.74575
      7   1.42592  2.56616  0.52136  2.41724     12 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.08716  2.67379  4.23514  0.73073  0.65692  0.66641  0.72062
      8   2.61609  2.47825  3.12824  0.22411     16 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.05738  3.27498  4.02039  1.38644  0.28763  1.10720  0.40120
      9   1.33116  2.89729  0.51139  2.51336     22 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.05107  4.24778  3.33855  1.46634  0.26236  0.95691  0.48464
     10   1.83792  2.34046  0.44364  2.27427     23 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.06131  4.23018  3.10299  1.46634  0.26236  1.50546  0.25092
     11   0.36824  2.62236  1.82761  2.59538     24 A - - <
          1.38629  1.38629  1.38629  1.38629
          0.03047  4.19934  4.19934  1.46634  0.26236  1.71417  0.19859
     12   2.49853  3.35060  0.17260  3.18792     25 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04369  4.20215  3.58328  1.46634  0.26236  1.20760  0.35513
     13   2.33250  0.52717  2.14171  1.63363     26 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.06347  3.06735  4.20302  1.65656  0.21170  1.84810  0.17142
     14   0.10942  3.54427  3.27682  3.29670     34 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.03035  4.20329  4.20329  1.46634  0.26236  1.08873  0.41045
     15   2.06067  3.16450  0.25941  2.83210     35 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.04486  3.53467  4.22014  0.81628  0.58353  1.20522  0.35614
     16   1.86818  0.90447  2.53974  1.01625     38 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.19626  4.22835  1.81016  1.46634  0.26236  0.56238  0.84362
     17   1.62092  1.03912  2.36363  1.03722     39 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.18902  3.84577  1.89139  1.18342  0.36561  2.58216  0.07862
     18   1.57047  1.17859  2.07517  1.02497     41 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.03924  3.95071  3.95071  1.46634  0.26236  0.17919  1.80758
     19   2.58482  3.14778  0.18293  3.01970     42 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02952  4.23066  4.23066  1.46634  0.26236  1.50213  0.25187
     20   3.07240  4.04580  0.09496  3.62004     43 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.05068  3.35597  4.23066  1.13229  0.38904  1.50213  0.25187
     21   2.11276  1.89942  2.67527  0.41468     48 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.14057  2.34065  3.35597  0.35453  1.20901  1.50213  0.25187
     22   0.20689  2.99607  2.70079  2.66281     51 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.09359  3.17497  3.04608  1.30758  0.31536  0.84464  0.56161
     23   1.83110  2.30700  0.48797  2.06883     56 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.03767  4.20009  3.81775  1.46634  0.26236  1.88121  0.16535
     24   3.32629  0.19916  3.19817  2.26512     57 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03066  4.19308  4.19308  1.46634  0.26236  0.74281  0.64583
     25   2.75825  2.06575  2.41498  0.32780     58 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.02960  4.22785  4.22785  1.46634  0.26236  1.14847  0.38144
     26   2.47194  0.52116  2.21450  1.54864     59 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.09356  4.23491  2.59244  1.46634  0.26236  0.64695  0.74158
     27   2.19414  3.15609  0.25650  2.62828     60 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.06135  4.19095  3.11504  1.46634  0.26236  1.71069  0.19936
     28   2.25436  1.16603  1.96320  0.81408     61 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.03152  4.16587  4.16587  1.46634  0.26236  2.16783  0.12152
     29   2.37273  0.73966  1.99316  1.22679     62 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.05090  4.16599  3.37821  1.46634  0.26236  1.45753  0.26502
     30   1.50882  2.55823  0.50041  2.35276     63 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04064  4.16365  3.71814  1.46634  0.26236  1.56173  0.23543
     31   2.43651  2.99347  0.21259  2.91995     64 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.09808  4.16855  2.55173  1.46634  0.26236  2.15549  0.12312
     32   1.86203  2.32560  0.44901  2.21955     65 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.05849  3.25189  4.01118  0.92941  0.50217  2.53917  0.08222
     33   3.03397  0.16724  3.60957  2.54064     70 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.08182  4.10243  2.78020  1.46634  0.26236  2.54682  0.08157
     34   2.73308  2.67626  3.25517  0.18924     72 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.10721  2.87716  3.09298  0.83543  0.56861  2.74202  0.06661
     35   1.25610  1.54436  1.56722  1.22703     78 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.10426  4.02742  2.51094  1.46634  0.26236  2.84127  0.06012
     36   1.25551  1.54536  1.56847  1.22597     79 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.03879  3.96195  3.96195  1.46634  0.26236  0.72638  0.66099
     37   1.25551  1.54536  1.56847  1.22597     80 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.19618  1.82080  4.12015  1.18719  0.36395  1.48930  0.25558
     38   0.11647  3.50511  3.20391  3.23670     88 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.05924  3.17737  4.14637  0.63908  0.75031  1.02566  0.44404
     39   0.14953  3.17936  3.04062  3.00640     91 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.07308  2.90485  4.15283  1.55555  0.23708  1.55415  0.23746
     40   2.48083  0.52172  2.11204  1.60031    100 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03684  3.85849  4.19490  1.09868  0.40543  1.89861  0.16226
     41   3.08712  0.26103  2.73601  2.12630    102 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03059  4.19542  4.19542  1.46634  0.26236  1.92751  0.15725
     42   2.53923  0.57748  2.36554  1.32477    103 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03059  4.19542  4.19542  1.46634  0.26236  1.92751  0.15725
     43   1.40250  2.12250  0.66416  2.12375    104 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.03607  3.89401  4.19542  1.13184  0.38926  1.92751  0.15725
     44   0.95388  2.10212  1.03108  1.99555    106 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.03223  4.19542  4.09508  1.46634  0.26236  0.34393  1.23436
     45   0.11439  3.56685  3.12147  3.33109    107 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.05827  3.16173  4.25061  1.96631  0.15079  1.03285  0.44004
     46   2.25530  3.01323  0.24864  2.71561    116 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.10757  2.43323  4.25211  2.54677  0.08157  1.09861  0.40547
     47   2.26467  3.48867  0.19759  3.10350    137 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03892  4.25212  3.73240  1.46634  0.26236  1.09861  0.40547
     48   2.26368  1.89960  2.77922  0.37933    138 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.24236  3.93110  1.46634  0.26236  1.23897  0.34204
     49   2.96801  0.18223  3.59613  2.43321    139 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04873  3.40740  4.23806  0.72052  0.66651  0.90196  0.52049
     50   1.89574  2.62495  0.36630  2.47628    141 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02903  4.24691  4.24691  1.46634  0.26236  1.21347  0.35263
     51   1.96744  1.02147  1.71794  1.13730    142 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.12449  2.36510  3.76753  0.28095  1.40675  1.21347  0.35263
     52   1.32586  1.53359  1.17229  1.56538    144 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.09764  4.23806  2.54355  1.46634  0.26236  0.90196  0.52049
     53   2.07410  2.72580  0.30324  2.65333    145 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04424  3.94216  3.73504  1.19354  0.36118  0.47539  0.97191
     54   2.82457  3.59527  0.12332  3.53260    147 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.08909  2.64946  4.23029  2.12394  0.12733  1.50632  0.25068
     55   2.70588  2.60671  3.18666  0.20077    158 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02953  4.23031  4.23031  1.46634  0.26236  1.06231  0.42412
     56   3.01888  2.88476  3.54790  0.14330    160 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02928  4.23843  4.23843  1.46634  0.26236  1.37489  0.29151
     57   3.02756  0.17018  3.41994  2.58574    161 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.08826  2.65853  4.23843  0.83910  0.56581  1.37489  0.29151
     58   0.57455  2.71606  1.28985  2.34761    164 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02980  4.23843  4.20453  1.46634  0.26236  1.37489  0.29151
     59   0.10754  3.54353  3.29989  3.31980    165 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02930  4.23794  4.23794  1.46634  0.26236  1.34967  0.30019
     60   0.43397  2.30559  2.07742  2.06268    166 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02928  4.23843  4.23843  1.46634  0.26236  0.91147  0.51405
     61   2.87446  2.66850  3.39653  0.17351    167 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.08749  2.66700  4.24690  1.15675  0.37761  0.90221  0.52033
     62   3.64812  0.15259  3.41728  2.49278    172 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.09106  4.02092  2.67221  1.20156  0.35771  1.09861  0.40547
     63   2.87459  0.34713  2.55175  1.83946    174 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03171  4.19569  4.12574  1.46634  0.26236  0.34500  1.23176
     64   1.80165  1.30007  1.36372  1.18171    175 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.02911  4.23770  4.25109  1.44929  0.26754  1.05253  0.42933
     65   1.54876  1.91254  0.77108  1.73007    177 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.03793  4.25212  3.77274  1.46634  0.26236  1.09861  0.40547
     66   2.69602  0.49298  2.44157  1.44946    178 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02980  4.24332  4.19976  1.46634  0.26236  0.80573  0.59196
     67   2.64025  0.61576  2.38724  1.21557    180 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03280  4.01593  4.25148  1.19710  0.35963  1.06979  0.42020
     68   2.46782  0.55814  2.06201  1.53358    182 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.04483  3.51968  4.25211  0.93265  0.50007  1.09861  0.40547
     69   2.82651  0.37942  2.52193  1.73604    185 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03297  4.00619  4.25212  1.18657  0.36423  1.09861  0.40547
     70   2.85953  0.37995  2.61475  1.68405    187 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03826  3.75907  4.25212  0.96181  0.48159  1.09861  0.40547
     71   3.05280  3.68706  0.10974  3.45266    189 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.02888  4.25212  4.25212  1.46634  0.26236  1.09861  0.40547
     72   3.24991  0.22438  3.13283  2.13183    191 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.04244  4.25212  3.60008  1.46634  0.26236  1.09861  0.40547
     73   1.10102  1.80133  1.36012  1.40340    192 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.03438  3.96770  4.20754  1.31847  0.31135  0.78806  0.60647
     74   0.17373  3.18075  2.75850  2.90899    194 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.04023  3.81726  4.04874  1.20126  0.35784  1.14332  0.38384
     75   3.00306  0.17240  3.57900  2.51556    196 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.04023  3.81733  4.04874  1.20134  0.35781  1.01478  0.45017
     76   3.00861  0.17146  3.58449  2.52006    198 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.03543  4.05113  4.05113  1.46634  0.26236  1.09861  0.40547
     77   0.13411  3.37315  3.08428  3.09093    199 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01787  4.03357        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Gln
ACC      bact-Gln-r2-022416
STATES   230
NODES    61
CLEN     72
W        1037
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 13:31:12 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gln-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gln-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gln-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     8979
EFFN     8979.000000
CKSUM    1285784443
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -16.6320 0.71887
ECMLC    0.73975    -6.81875     1.35256     1600000      506281  0.002370
ECMGC    0.29014   -37.28376   -24.19990     1600000       17812  0.022457
ECMLI    0.72523    -6.37674     1.84573     1600000      466610  0.002572
ECMGI    0.30228   -34.60839   -22.09658     1600000       17562  0.022776
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1037  2227 -18.058 -19.304  -0.000 -12.061                 
    IL     1     1 2     1     4    31    48  1040  2230  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    32    49  1041  2231  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    206 - G - -
    MR     3     2 3     5     5    35    52  1040  2230  -6.016  -0.058 -17.922  -5.369 -19.026         -0.225 -1.574  1.441 -3.406 
     D     4     2 3     5     5    28    45  1034  2224  -7.045  -2.400  -4.671  -6.102  -0.417         
    IR     5     5 3     5     5    30    47  1039  2229  -8.909  -0.296 -12.420 -10.587  -2.453          0.000  0.000  0.000  0.000 
                                             [ MATP    2 ]      1    204 U A - -
    MP     6     5 3    10     6    39    56  1039  2229 -18.995 -18.934  -0.000 -17.711 -17.991 -18.386 -13.069 -15.453 -15.118  1.685 -7.441 -15.460 -0.837 -14.467 -12.981 -4.484 -15.371 -2.531  3.582 -15.592 -5.106 -13.932 
    ML     7     5 3    10     6    31    48  1037  2227  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR     8     5 3    10     6    32    48  1034  2223 -15.080 -13.809  -1.990 -13.787  -0.419 -12.001 -5.605 -0.635 -7.532  1.736 
     D     9     5 3    10     6    28    44  1032  2222 -14.735 -13.433  -9.230  -9.912  -9.930  -0.006 
    IL    10    10 5    10     6    32    49  1038  2228  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    11    11 6    11     5    32    49  1038  2227  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    3 ]      2    203 G C - -
    MP    12    11 6    16     6    37    54  1037  2227 -19.004 -18.943  -0.010  -7.232 -18.000 -18.395 -6.922 -11.657 -13.054 -4.236 -12.784 -12.539  0.927 -13.122 -13.211  3.419 -13.592 -2.497  1.323 -7.230 -0.612 -11.841 
    ML    13    11 6    16     6    31    49  1035  2225  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    14    11 6    16     6    31    47  1031  2221 -14.664 -13.393  -9.302 -13.371  -0.003 -11.585 -8.613  1.683 -9.383 -0.348 
     D    15    11 6    16     6    28    44  1032  2222 -14.735 -13.433  -9.230  -9.912  -9.930  -0.006 
    IL    16    16 5    16     6    32    49  1036  2226  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    17    17 6    17     5    32    49  1036  2226  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    4 ]      3    202 g c - -
    MP    18    17 6    22     6    36    52  1035  2225 -18.995 -18.934  -0.000 -17.710 -17.990 -18.385 -14.528 -13.236 -14.517 -1.602 -14.982 -15.483  2.427 -14.659 -14.402  2.909 -1.621 -0.954  0.959 -14.786 -12.353 -13.283 
    ML    19    17 6    22     6    33    50  1034  2224 -12.663 -13.009  -0.010  -7.418 -12.859 -10.389 -6.581 -8.347  1.993 -7.342 
    MR    20    17 6    22     6    30    46  1030  2220 -14.664 -13.393  -2.305 -13.371  -0.327 -11.585 -0.340 -4.652  1.660 -6.743 
     D    21    17 6    22     6    28    44  1032  2222 -14.735 -13.433  -0.131  -9.912  -9.930  -3.562 
    IL    22    22 5    22     6    30    46  1034  2224  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    23    23 6    23     5    30    46  1034  2223  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      4    201 G C - -
    MP    24    23 6    28     6    34    50  1033  2223 -19.014 -18.953  -0.000 -17.729 -18.009 -18.404 -15.529 -15.548 -15.063 -1.158 -13.541 -15.365  1.921 -7.575 -15.098  3.265 -15.325 -13.491  0.917 -15.483 -1.961 -13.875 
    ML    25    23 6    28     6    29    45  1031  2221  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    26    23 6    28     6    29    45  1028  2218 -14.341 -13.070  -7.885 -13.048  -0.007 -11.261 -8.851  1.997 -9.390 -7.733 
     D    27    23 6    28     6    26    42  1026  2216 -11.238  -9.936  -5.733  -6.415  -6.432  -0.064 
    IL    28    28 5    28     6    30    46  1032  2222  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    29    29 6    29     5    30    46  1032  2222  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      5    200 g c - -
    MP    30    29 6    34     6    32    48  1031  2221 -19.014 -18.953  -0.000 -17.730 -18.009 -18.404 -13.151 -10.416 -13.038  1.092 -9.697 -13.718  2.578 -13.175 -13.233  2.831 -13.597 -3.472 -0.604 -13.007 -4.887 -11.847 
    ML    31    29 6    34     6    28    45  1029  2219  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    32    29 6    34     6    28    44  1027  2217 -14.337 -13.066  -8.975 -13.044  -0.004 -11.258 -8.847  1.997 -9.385 -7.730 
     D    33    29 6    34     6    26    42  1026  2216 -11.238  -9.936  -2.288  -6.415  -6.432  -0.376 
    IL    34    34 5    34     6    29    45  1030  2220  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    35    35 6    35     5    29    45  1030  2220  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      6    199 u a - -
    MP    36    35 6    40     6    30    46  1029  2219 -19.014 -18.953  -0.000 -17.730 -18.009 -18.404 -13.309 -7.352 -13.309  1.013 -12.179 -14.152  1.571 -12.830 -11.283  1.392 -13.681 -4.800  2.780 -10.932  0.559 -8.221 
    ML    37    35 6    40     6    27    44  1027  2217  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    38    35 6    40     6    27    43  1026  2216 -14.337 -13.066  -8.975 -13.044  -0.004 -11.258 -5.818  1.989 -7.940 -7.034 
     D    39    35 6    40     6    26    42  1026  2216 -10.941  -9.639  -1.288  -6.118  -6.136  -0.836 
    IL    40    40 5    40     6    28    44  1028  2218  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    41    41 6    41     5    28    44  1028  2218  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      7    198 G C - -
    MP    42    41 6    46     4    28    44  1027  2217 -18.244 -18.451  -0.000 -16.865                 -6.684 -9.490 -12.800  2.687 -13.931 -13.396 -1.671 -13.490 -13.238  3.093 -13.484 -4.626 -0.644 -8.834 -5.857 -11.765 
    ML    43    41 6    46     4    26    43  1026  2216  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    44    41 6    46     4    26    42  1025  2215 -12.362 -11.391  -9.259  -0.003                  1.993 -8.975 -8.316 -6.115 
     D    45    41 6    46     4    25    41  1025  2215  -5.702  -5.383  -0.646  -1.653                 
    IL    46    46 5    46     4    27    43  1027  2217  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    47    47 6    47     3    27    43  1026  2216  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL    9 ]      8      - U - - -
    ML    48    47 6    50     3    26    42  1025  2215 -19.153  -0.000 -17.807                         -16.466 -15.070 -18.065  2.000 
     D    49    47 6    50     3    25    41  1024  2214 -14.481  -0.003  -8.873                         
    IL    50    50 3    50     3    26    42  1025  2215  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   10 ]      9      - g - - -
    ML    51    50 3    53     2    25    41  1024  2214 -19.830  -0.000                                  0.108  0.090  0.705 -2.135 
     D    52    50 3    53     2    24    40  1023  2213  -8.445  -0.004                                 
    IL    53    53 3    53     2    25    41  1024  2214  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    11 ]      -      - - - - -
     B    54    53 3   124    55    24    40  1023  2213                                                 
                                             [ BEGR   42 ]      -      - - - - -
     S    55    54 1    56     3     1     7   102   202 -19.174  -0.000 -17.828                         
    IL    56    56 2    56     3     1     8   103   204  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    150      - c - - -
    ML    57    56 2    59     3     1     7   102   202 -19.174  -0.396  -2.058                         -0.149  0.979 -0.429 -1.379 
     D    58    56 2    59     3     0     6   101   202  -6.174  -1.687  -0.566                         
    IL    59    59 3    59     3     1     8   102   203  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    151      - A - - -
    ML    60    59 3    62     3     1     7   101   201  -2.236  -0.344 -17.432                          1.633 -4.440 -1.052 -1.439 
     D    61    59 3    62     3     0     6   101   202  -1.854  -0.468 -11.975                         
    IL    62    62 3    62     3     1     6   108   209  -0.264  -2.723  -5.969                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    172      - u - - -
    ML    63    62 3    65     3     1     6    61   125 -19.142  -0.233  -2.745                         -0.231 -3.149  0.468  0.724 
     D    64    62 3    65     3     0     4    59   122 -15.072 -10.585  -0.001                         
    IL    65    65 3    65     3     1     6    62   125  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]    173      - u - - -
    ML    66    65 3    68     3     1     7    60   124 -18.909  -0.000 -17.563                          0.470 -2.751 -0.221  0.685 
     D    67    65 3    68     3     0     4    59   122 -18.017  -0.200  -2.947                         
    IL    68    68 3    68     3     1     5    60   124  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    174      - C - - -
    ML    69    68 3    71     5     1     6    59   123 -18.075  -0.000 -13.546 -18.103 -18.994         -4.671  1.140 -4.466  0.775 
     D    70    68 3    71     5     0     1    55   119 -13.029  -8.872 -12.290  -0.004 -10.577         
    IL    71    71 3    71     5     1     1    59   123  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   48 ]    175    197 G C - -
    MP    72    71 3    76     6     2     7    58   122 -19.003 -18.942  -0.000 -17.719 -17.999 -18.394 -14.662 -13.628 -14.438 -1.688 -13.892 -14.962  2.471 -14.339 -14.526  3.213 -14.829 -1.899 -1.830 -14.579 -1.632 -13.285 
    ML    73    71 3    76     6     1     1    57   121  -7.255  -7.601  -0.509  -2.010  -7.451  -4.980 -0.525  1.016 -1.271 -0.204 
    MR    74    71 3    76     6     1     3    55   119 -14.925 -13.654  -9.563 -13.632  -0.003 -11.846 -8.210 -9.982  1.998 -8.970 
     D    75    71 3    76     6     0     0    57   121  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    76    76 5    76     6     1     1    57   121  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    77    77 6    77     5     1     1    57   121  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   49 ]    176    196 c g - -
    MP    78    77 6    82     6     2     7    56   120 -19.003  -6.115  -0.021 -17.719 -17.999 -18.394 -13.298 -12.999 -5.546  0.900 -1.769 -14.142  2.502 -9.272 -13.156 -0.304 -13.670  0.283  2.081 -8.598  0.912 -6.517 
    ML    79    77 6    82     6     1     1    55   119  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    80    77 6    82     6     1     2    54   118 -14.925 -13.654  -9.563 -13.632  -0.003 -11.846  1.998 -9.683 -8.919 -9.029 
     D    81    77 6    82     6     0     0    58   122  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    82    82 5    82     6     1     1    56   119  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    83    83 6    83     5     1     2    55   119  -8.781  -6.869  -0.017 -10.460 -11.566          0.000  0.000  0.000  0.000 
                                             [ MATP   50 ]    177    194 A U - -
    MP    84    83 6    88     6     2     6    54   118 -18.982 -18.922  -0.000 -17.698 -17.978 -18.373 -13.182 -11.930 -13.032  3.182 -13.591 -13.683 -2.481 -4.861 -13.355  0.849 -13.658 -0.424  1.985 -8.788 -2.366 -6.706 
    ML    85    83 6    88     6     1     2    54   118 -13.772  -0.008  -8.832  -8.527 -13.968 -11.497 -7.616 -9.390  1.997 -8.378 
    MR    86    83 6    88     6     1     2    53   117 -14.925 -13.654  -0.004 -13.632  -8.766 -11.846 -8.210 -9.982  1.998 -8.970 
     D    87    83 6    88     6     0     0    58   122  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    88    88 5    88     6     1     1    55   119  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    89    89 6    89     5     1     2    53   117  -8.781  -0.005 -12.293 -10.460 -11.566          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]    178    192 G C - -
    MP    90    89 6    94     6     2     4    52   116 -19.035 -18.974  -0.000 -17.751 -18.031 -18.426 -16.883 -8.980 -18.872 -2.684 -18.555 -14.784 -3.793 -18.463 -14.958  3.973 -15.160 -9.199 -4.002 -15.241 -15.325 -17.814 
    ML    91    89 6    94     6     1     1    56   120  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    92    89 6    94     6     1     1    59   123  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    93    89 6    94     6     0     0    59   123  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    94    94 5    94     6     1     1    55   118  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    95    95 6    95     5     1     1    55   118  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    179    191 G C - -
    MP    96    95 6   100     4     2     2    50   114 -18.265 -18.472  -0.040  -5.195                 -17.005 -3.692 -19.526 -11.082 -18.617 -14.741 -12.894 -18.894 -14.962  3.978 -2.981 -4.773 -13.264 -15.213 -15.353 -18.732 
    ML    97    95 6   100     4     1     1    55   119  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    98    95 6   100     4     1     1    60   123  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    99    95 6   100     4     0     0    59   123  -4.568  -4.250  -2.265  -0.520                 
    IL   100   100 5   100     4     1     1    54   117  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   101   101 6   101     3     1     1    54   118  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   53 ]    180      - U - - -
    ML   102   101 6   104     3     1     3    23    86 -19.134  -0.000 -17.788                         -6.839 -5.633 -5.770  1.983 
     D   103   101 6   104     3     0     0    60   124 -15.400 -10.913  -0.001                         
    IL   104   104 3   104     3     1     1    54   118  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   54 ]    181      - U - - -
    ML   105   104 3   107     3     1     2    20    84 -19.134  -0.000 -17.788                         -13.380 -6.793 -4.804  1.984 
     D   106   104 3   107     3     0     0    60   124 -15.400 -10.913  -0.001                         
    IL   107   107 3   107     3     1     1    54   118  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]    182      - C - - -
    ML   108   107 3   110     3     1     1    15    79 -19.134  -0.000 -17.788                         -6.258  1.995 -14.967 -13.588 
     D   109   107 3   110     3     0     0    60   124  -0.002 -10.913  -9.791                         
    IL   110   110 3   110     3     1     1    60   124  -0.416  -1.997 -13.374                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    187      - G - - -
    ML   111   110 3   113     3     1     1     8    27 -19.174  -0.000 -17.828                         -1.170 -15.416  1.830 -14.431 
     D   112   110 3   113     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   113   113 3   113     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    188      - A - - -
    ML   114   113 3   116     3     1     1     7    25 -19.174  -0.000 -17.828                          2.000 -15.092 -14.369 -14.422 
     D   115   113 3   116     3     0     0    14    33  -6.174  -1.687  -0.566                         
    IL   116   116 3   116     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    189      - A - - -
    ML   117   116 3   119     3     1     1     5    24 -19.174  -0.069  -4.422                          1.170 -0.719 -0.108 -2.224 
     D   118   116 3   119     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   119   119 3   119     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    190      - U - - -
    ML   120   119 3   122     2     1     1     1     1       *   0.000                                 -5.562 -0.581 -1.885  1.604 
     D   121   119 3   122     2     0     0     0     0       *   0.000                                 
    IL   122   122 3   122     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    60 ]      -      - - - - -
     E   123   122 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   12 ]      -      - - - - -
     S   124    54 1   125     1     7    21  1000  2190   0.000                                         
                                             [ BIF    13 ]      -      - - - - -
     B   125   124 1   126   173     7    21  1000  2190                                                 
                                             [ BEGL   14 ]      -      - - - - -
     S   126   125 1   127     4     0     4    33    54  -0.017 -17.165  -6.407 -17.213                 
                                             [ MATP   15 ]     10     36 G C - -
    MP   127   126 1   131     6     2     6    33    54  -7.216  -6.449  -0.026 -17.734 -18.013 -18.409 -16.999 -7.570 -19.581 -4.297 -18.605 -2.129 -4.095 -18.920 -14.945  3.955 -15.132 -3.056 -13.248 -5.215 -15.338 -18.828 
    ML   128   126 1   131     6     1     1    31    52  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   129   126 1   131     6     1     1    32    53 -14.047 -12.776  -0.007 -12.754  -7.888 -10.968 -8.484  1.996 -9.002 -7.408 
     D   130   126 1   131     6     0     0    29    50  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   131   131 5   131     6     1     1    32    53  -8.591  -8.854  -0.009 -10.509 -11.286 -10.946  0.000  0.000  0.000  0.000 
    IR   132   132 6   132     5     1     1    32    53  -8.466  -0.006 -11.977 -10.145 -11.251          0.000  0.000  0.000  0.000 
                                             [ MATP   16 ]     12     34 C G - -
    MP   133   132 6   137     6     2     6    31    52 -19.035 -18.974  -0.000 -17.751 -14.240 -18.426 -13.339 -13.040 -9.759 -0.298 -7.551 -14.181  3.130 -12.856 -13.196  1.337 -13.709 -2.404  1.846 -13.521 -3.106 -11.915 
    ML   134   132 6   137     6     1     1    29    50  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   135   132 6   137     6     1     1    29    50  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   136   132 6   137     6     0     0    27    48  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   137   137 5   137     6     1     1    30    51  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   138   138 6   138     5     1     1    30    51  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   17 ]     13     33 C G - -
    MP   139   138 6   143     6     2     6    29    50 -19.035  -5.771  -0.027 -17.751 -18.030 -18.426 -14.032 -13.785 -13.940 -2.472 -12.709 -3.971  3.170 -13.415 -13.836  2.038 -4.661 -11.399  0.193 -1.126  0.006 -12.566 
    ML   140   138 6   143     6     1     1    28    49  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   141   138 6   143     6     1     1    27    48  -7.610  -6.339  -2.248  -6.317  -0.482  -4.531 -0.150 -1.076  0.938 -0.496 
     D   142   138 6   143     6     0     0    26    47  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   143   143 5   143     6     1     1    28    49  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   144   144 6   144     5     1     1    28    49  -9.153  -0.004 -12.664 -10.832 -11.938          0.000  0.000  0.000  0.000 
                                             [ MATP   18 ]     14     31 a a - -
    MP   145   144 6   149     4     2     4    27    48  -6.132 -18.472  -0.021 -16.886                  2.990 -4.687 -15.330 -4.471 -10.692 -15.518  1.443 -14.614 -1.462 -12.242 -4.661 -4.258  1.310 -15.822  1.086 -2.358 
    ML   146   144 6   149     4     1     1    27    48  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   147   144 6   149     4     1     1    26    47  -5.507  -4.536  -2.403  -0.423                  1.135 -1.018 -0.764 -0.473 
     D   148   144 6   149     4     0     0    25    47  -4.568  -4.250  -2.265  -0.520                 
    IL   149   149 5   149     4     1     1    28    50  -1.259 -10.470  -0.782 -12.955                  0.000  0.000  0.000  0.000 
    IR   150   150 6   150     3     1     1    27    48  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   19 ]     17      - A - - -
    ML   151   150 6   153     3     1     2    24    45 -19.174  -0.000 -17.828                          1.918 -6.252 -13.804 -2.274 
     D   152   150 6   153     3     0     0    22    43  -7.210  -2.723  -0.248                         
    IL   153   153 3   153     3     1     1    26    47  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   20 ]     18      - g - - -
    ML   154   153 3   156     3     1     1    23    44 -19.174  -0.012  -6.966                          0.933 -4.248  0.995 -4.469 
     D   155   153 3   156     3     0     0    21    42  -7.210  -2.723  -0.248                         
    IL   156   156 3   156     3     1     1    25    46  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   21 ]     19      - u - - -
    ML   157   156 3   159     3     1     1    22    43  -1.349  -0.719 -17.816                         -3.529  0.931 -4.369  0.970 
     D   158   156 3   159     3     0     0    21    41 -13.643  -0.006  -8.034                         
    IL   159   159 3   159     3     1     1    22    42  -3.513  -0.132 -15.339                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     22      - G - - -
    ML   160   159 3   162     3     1     1    21    41  -7.271  -0.009 -17.828                         -2.312 -15.402  1.922 -6.656 
     D   161   159 3   162     3     0     0    19    39  -6.174  -1.687  -0.566                         
    IL   162   162 3   162     3     1     1    21    41  -6.635  -0.017  -9.335                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     24      - G - - -
    ML   163   162 3   165     3     1     1    20    40 -19.174  -0.000 -17.828                         -13.713 -15.442  2.000 -14.438 
     D   164   162 3   165     3     0     0    18    38  -6.174  -1.687  -0.566                         
    IL   165   165 3   165     3     1     1    21    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     25      - U - - -
    ML   166   165 3   168     3     1     1    19    39  -2.389  -0.306 -17.828                         -5.231  0.202 -1.618  1.320 
     D   167   165 3   168     3     0     0    15    35  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    19    40  -1.295  -0.755 -14.934                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     30      - A - - -
    ML   169   168 3   171     2     1     1     1     1       *   0.000                                  1.922 -5.899 -2.373 -14.028 
     D   170   168 3   171     2     0     0     0     0       *   0.000                                 
    IL   171   171 3   171     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    26 ]      -      - - - - -
     E   172   171 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   27 ]      -      - - - - -
     S   173   125 1   174     3     0     7   984  2174  -6.405  -0.017 -17.828                         
    IL   174   174 2   174     3     1     5   985  2175  -7.484  -0.009 -10.184                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     38      - A - - -
    ML   175   174 2   177     5     1     7   984  2174  -3.216  -0.164 -14.894 -18.134 -19.026          1.548 -3.527 -0.278 -2.596 
     D   176   174 2   177     5     0     0  1006  2195  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   177   177 3   177     5     1     7   989  2179  -0.228  -2.772 -16.145 -17.978 -17.251          0.000  0.000  0.000  0.000 
                                             [ MATP   29 ]     48    149 C G - -
    MP   178   177 3   182     6     2     6   982  2172  -7.158 -18.974  -0.062  -4.826 -18.031 -18.426 -8.608 -6.363 -13.263  1.707 -5.851 -7.413  3.183 -1.228 -9.411  0.808 -13.663 -0.501 -0.582 -6.091 -8.276 -4.521 
    ML   179   177 3   182     6     1     1  1036  2226  -6.707  -7.053  -1.768  -0.656  -6.903  -4.433  0.040 -0.846  0.680 -0.298 
    MR   180   177 3   182     6     1     1  1020  2209  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   181   177 3   182     6     0     0  1036  2226  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   182   182 5   182     6     1     3   977  2167  -8.665  -8.928  -0.009 -10.583 -11.359 -11.020  0.000  0.000  0.000  0.000 
    IR   183   183 6   183     5     1     1   989  2179  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   30 ]     50    148 C G - -
    MP   184   183 6   188     6     2     4   975  2165  -5.667  -3.994  -0.124 -17.699 -17.979 -18.374 -13.337 -13.036 -13.332  0.776 -12.195 -14.170  3.559 -12.849 -13.191  0.195 -10.078 -3.593  0.285 -13.519 -4.352 -8.724 
    ML   185   183 6   188     6     1     4  1051  2241 -15.088 -15.434  -9.204  -0.003 -15.284 -12.814 -11.122 -7.889 -12.366  1.998 
    MR   186   183 6   188     6     1     1  1032  2222  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   187   183 6   188     6     0     0  1040  2230  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   188   188 5   188     6     1     3  1039  2229 -10.091  -0.007  -8.272 -12.009 -12.785 -12.446  0.000  0.000  0.000  0.000 
    IR   189   189 6   189     5     1     2  1038  2228 -11.261  -2.060 -14.772  -0.397 -14.046          0.000  0.000  0.000  0.000 
                                             [ MATP   31 ]     52    146 G C - -
    MP   190   189 6   194     6     2     4   963  2153 -18.890 -18.829  -0.066  -4.478 -17.885 -18.280 -12.961 -2.494 -12.812  1.367 -13.229 -13.448  0.478 -13.224 -13.130  3.118 -10.012 -8.414  1.555 -12.719 -2.149 -11.704 
    ML   191   189 6   194     6     1     3  1050  2240 -15.087 -15.433 -10.147  -0.002 -15.283 -12.812  1.999 -10.343 -9.579 -9.682 
    MR   192   189 6   194     6     1     1  1049  2239 -16.401 -15.130 -11.039 -15.108  -0.505  -1.761  1.999 -11.093 -10.332 -10.428 
     D   193   189 6   194     6     0     0  1043  2233  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   194   194 5   194     6     1     1   979  2169  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1   976  2166  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]     53    145 G C - -
    MP   196   195 6   200     6     2     2   951  2141  -4.247 -18.763  -0.097 -17.539 -17.819  -6.361 -16.362 -7.841 -17.600 -3.834 -18.082 -14.677 -0.431 -17.464 -14.727  3.767 -14.964 -1.832  0.371 -15.079 -14.956 -16.376 
    ML   197   195 6   200     6     1     2  1049  2239 -16.190 -16.537  -5.879  -0.025 -16.386 -13.916 -9.996 -11.736  1.975 -3.916 
    MR   198   195 6   200     6     1     1  1049  2239 -15.897 -14.626 -10.535 -14.604  -9.738  -0.003 -10.843  1.999 -11.532 -9.470 
     D   199   195 6   200     6     0     0  1048  2238 -17.257 -15.955 -11.752 -12.435 -12.452  -0.001 
    IL   200   200 5   200     6     1     3   947  2137 -11.347 -11.610  -0.001 -13.265 -14.041 -13.702  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1   957  2147  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     55    144 a u - -
    MP   202   201 6   206     4     2     3   946  2136 -18.037  -2.337  -0.318 -16.659                 -12.783 -4.250 -12.606  2.594 -13.599 -8.164 -1.018 -10.603 -13.026  2.150 -10.476 -3.003  2.183 -12.468 -2.043 -3.988 
    ML   203   201 6   206     4     1     1  1049  2239 -13.250  -0.003  -9.212 -12.162                  1.078 -10.371  0.916 -10.280 
    MR   204   201 6   206     4     1     1   886  2076  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   205   201 6   206     4     0     0  1048  2238 -14.666  -0.013 -12.363  -6.802                 
    IL   206   206 5   206     4     1     1   968  2158  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     3     1     1  1048  2238  -0.022  -6.071 -11.009                          0.000  0.000  0.000  0.000 
                                             [ MATL   34 ]     56      - c - - -
    ML   208   207 6   210     3     1     3    12    30 -19.159  -0.000 -17.813                         -1.931  0.931 -6.751  0.865 
     D   209   207 6   210     3     0     0    13    32 -14.027  -9.540  -0.002                         
    IL   210   210 3   210     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   35 ]     57      - U - - -
    ML   211   210 3   213     3     1     2    11    29 -19.159  -0.000 -17.813                         -5.446 -2.348 -6.572  1.915 
     D   212   210 3   213     3     0     0    12    31 -14.027  -4.122  -0.085                         
    IL   213   213 3   213     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   36 ]     58      - u - - -
    ML   214   213 3   216     3     1     1    10    28 -19.159  -0.000 -17.813                         -0.225  0.036 -0.087  0.236 
     D   215   213 3   216     3     0     0    11    30 -13.944  -0.005  -8.335                         
    IL   216   216 3   216     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     59      - g - - -
    ML   217   216 3   219     3     1     1     8    27 -19.174  -0.000 -17.828                         -0.533 -0.197  0.558 -0.053 
     D   218   216 3   219     3     0     0    15    34  -6.174  -1.687  -0.566                         
    IL   219   219 3   219     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     60      - a - - -
    ML   220   219 3   222     3     1     1     7    25 -19.174  -0.091  -4.038                          0.419  0.027 -0.054 -0.555 
     D   221   219 3   222     3     0     0    14    33  -6.174  -1.687  -0.566                         
    IL   222   222 3   222     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     61      - A - - -
    ML   223   222 3   225     3     1     1     5    24 -19.083  -0.000 -17.737                          1.346 -10.496  0.542 -10.488 
     D   224   222 3   225     3     0     0     6    25 -16.556 -12.069  -0.000                         
    IL   225   225 3   225     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     62      - U - - -
    ML   226   225 3   228     2     1     1     1     1       *   0.000                                 -0.783 -0.359 -1.219  1.144 
     D   227   225 3   228     2     0     0     0     0       *   0.000                                 
    IL   228   228 3   228     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    41 ]      -      - - - - -
     E   229   228 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Gln
ACC   bact-Gln-r2-022416
LENG  72
MAXL  1028
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 13:31:13 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gln-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gln-r2-022416.sto
NSEQ  8979
EFFN  62.574429
CKSUM 1285784443
STATS LOCAL MSV       -8.1478  0.71887
STATS LOCAL VITERBI   -9.0793  0.71887
STATS LOCAL FORWARD   -3.6956  0.71887
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.49844  1.35998  1.24288  1.46401
          1.38629  1.38629  1.38629  1.38629
          0.00313  6.46113  6.46113  1.46634  0.26236  0.00000        *
      1   1.62309  2.96135  3.93577  0.31275      1 U - - (
          1.38629  1.38629  1.38629  1.38629
          0.00313  6.46113  6.46113  1.46634  0.26236  1.09861  0.40547
      2   3.44641  2.05252  0.44048  1.62963      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00311  6.46715  6.46715  1.46634  0.26236  1.09861  0.40547
      3   3.10621  1.14590  0.69093  1.99377      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00311  6.46715  6.46715  1.46634  0.26236  1.09861  0.40547
      4   3.10921  1.42377  0.56977  1.90445      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00309  6.47355  6.47355  1.46634  0.26236  1.09861  0.40547
      5   1.95041  1.06896  0.79786  2.74690      5 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.00309  6.47358  6.47358  1.46634  0.26236  1.09861  0.40547
      6   2.04834  1.57326  1.77173  0.70594      6 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.00309  6.47363  6.47363  1.46634  0.26236  1.09861  0.40547
      7   0.98588  3.40595  0.61692  2.91667      7 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00309  6.47371  6.47371  1.46634  0.26236  1.09861  0.40547
      8   7.13853  6.53676  7.87526  0.00263      8 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00309  6.47379  6.47379  1.46634  0.26236  1.09861  0.40547
      9   1.30955  1.37112  0.92603  2.52433      9 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01453  6.48783  4.35006  1.46634  0.26236  1.09861  0.40547
     10   4.84058  4.04278  0.02889  5.79933     10 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00963  4.82292  6.47638  0.34678  1.22745  0.21175  1.65636
     11   2.75816  0.65485  1.75590  1.40928     12 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00309  6.48783  6.45782  1.46634  0.26236  1.09861  0.40547
     12   3.52287  0.62441  1.38428  1.69062     13 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48778  6.48778  1.46634  0.26236  1.10872  0.40045
     13   0.78966  1.64921  2.97445  1.19494     14 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.01697  4.17984  6.48778  0.63194  0.75835  1.10872  0.40045
     14   0.06335  4.85227  5.49502  3.00638     17 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48778  6.48778  1.46634  0.26236  1.10872  0.40045
     15   0.75368  4.01095  0.70667  4.01891     18 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01083  6.48778  4.68309  1.46634  0.26236  1.10872  0.40045
     16   3.41352  0.75327  4.05192  0.73635     19 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.48205  0.96509  6.48001  0.09869  2.36471  0.28323  1.39977
     17   3.02789  6.63701  0.05564  5.42878     22 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00934  4.85641  6.48783  0.35384  1.21061  1.09861  0.40547
     18   6.00976  7.23472  0.00463  6.53737     24 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     19   4.03847  1.27063  2.53138  0.47454     25 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.20770  1.68184  6.48782  0.53130  0.88634  1.09861  0.40547
     20   0.06157  4.98198  3.01185  5.61142     30 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     21   0.48328  3.71095  1.15019  3.16501     31 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.02098  3.95095  6.48783  0.15134  1.96291  1.09861  0.40547
     22   2.33185  1.30224  0.51830  3.34014     33 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     23   1.47059  1.84344  0.63055  2.53028     34 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01408  4.38501  6.48783  0.22854  1.58813  1.09861  0.40547
     24   5.72792  0.02807  5.12263  3.99175     36 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01456  4.34834  6.48783  0.22079  1.61890  1.09861  0.40547
     25   0.32198  3.56505  1.61307  3.04248     38 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.11324  2.24862  6.48781  1.91886  0.15873  1.09861  0.40547
     26   1.62162  0.58558  1.82526  2.47145     48 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00986  4.79231  6.48783  0.33367  1.25980  1.09861  0.40547
     27   2.20450  0.40829  2.40337  2.00623     50 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.08334  3.91757  2.81222  0.14658  1.99260  1.09861  0.40547
     28   1.61164  2.39588  0.64161  1.69878     52 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00324  6.42749  6.42749  1.46634  0.26236  3.72504  0.02441
     29   3.87491  3.09766  0.15173  2.59204     53 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.06270  3.02901  4.38925  0.06556  2.75742  3.72504  0.02441
     30   1.02819  3.01002  1.10622  1.33846     55 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.00327  6.41664  6.41664  1.46634  0.26236  0.19871  1.71364
     31   2.61527  0.74889  4.72832  0.80941     56 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.00308  6.47761  6.47761  1.46634  0.26236  2.26975  0.10908
     32   4.30258  2.93253  4.89420  0.07719     57 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00308  6.47761  6.47761  1.46634  0.26236  1.95044  0.15340
     33   1.48917  1.39188  1.47431  1.21437     58 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00308  6.47819  6.47819  1.46634  0.26236  0.24212  1.53696
     34   1.66744  1.53953  1.05640  1.38997     59 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     35   1.10643  1.39920  1.45203  1.66933     60 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.06389  6.48782  2.80729  1.46634  0.26236  1.09861  0.40547
     36   0.45283  5.97206  1.02470  5.90651     61 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00324  6.42718  6.42718  1.46634  0.26236  0.22837  1.58880
     37   1.81259  1.63210  2.15721  0.64321     62 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.37171  1.17676  6.13438  4.16387  0.01567  0.23618  1.55891
     38   1.37182  1.16372  2.70346  1.00223    144 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.09836  6.48719  2.38428  1.46634  0.26236  0.90736  0.51683
     39   2.58451  0.18004  3.03684  3.18583    145 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00335  6.39282  6.39282  1.46634  0.26236  0.49442  0.94142
     40   1.59462  0.65690  2.25213  1.75225    146 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.08644  2.51074  6.43499  0.03836  3.27982  3.23471  0.04017
     41   2.29796  2.48603  0.36441  2.10628    148 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00316  6.45311  6.45311  1.46634  0.26236  0.08274  2.53317
     42   2.61710  2.11875  0.61389  1.32589    149 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48780  6.48780  1.46634  0.26236  1.08656  0.41155
     43   1.46389  0.76783  1.69684  2.10880    150 c - - ,
          1.38629  1.38629  1.38629  1.38629
          0.18756  6.48781  1.77489  1.46634  0.26236  1.09861  0.40547
     44   0.27207  3.79214  2.12665  2.33908    151 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.31230  1.32271  6.30392  1.71973  0.19737  0.01796  4.02846
     45   1.49841  3.04503  1.10930  0.91846    172 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.18044  6.48779  1.81047  1.46634  0.26236  1.10470  0.40244
     46   1.07609  2.81939  1.55710  0.94499    173 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00364  6.31099  6.31099  1.46634  0.26236  0.15575  1.93638
     47   3.79779  0.61328  4.09653  0.86898    174 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00311  6.46661  6.46661  1.46634  0.26236  2.82094  0.06140
     48   3.11833  1.13728  0.54737  2.87160    175 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00311  6.46661  6.46661  1.46634  0.26236  2.82094  0.06140
     49   2.09650  1.00360  1.98979  0.98395    176 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.00311  6.46661  6.46661  1.46634  0.26236  2.82094  0.06140
     50   0.67368  3.22962  1.60753  1.38542    177 A - - <
          1.38629  1.38629  1.38629  1.38629
          0.00311  6.46661  6.46661  1.46634  0.26236  0.12681  2.12779
     51   4.25214  5.12839  0.02596  5.20935    178 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     52   4.66060  6.32919  0.01314  6.31323    179 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02987  6.48783  3.57902  1.46634  0.26236  1.09861  0.40547
     53   4.58052  4.29265  4.69074  0.03366    180 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00313  6.46109  6.46109  1.46634  0.26236  3.01234  0.05043
     54   4.94027  4.60386  4.38184  0.03012    181 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00313  6.46109  6.46109  1.46634  0.26236  0.10353  2.31919
     55   5.20256  0.01149  6.18698  5.55608    182 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.02987  3.57902  6.48783  1.11337  0.39817  1.09861  0.40547
     56   2.26451  6.57346  0.11379  6.08468    187 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     57   0.00363  7.05089  6.54120  6.63257    188 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     58   0.60282  1.88063  1.48883  2.59561    189 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04934  6.48783  3.06574  1.46634  0.26236  1.09861  0.40547
     59   4.24331  1.82385  2.71685  0.27687    190 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00319  6.44168  6.44168  1.46634  0.26236  0.06325  2.79218
     60   6.16060  0.02082  4.69210  4.67526    191 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     61   5.12297  0.02936  5.04682  4.10179    192 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48783  6.48783  1.46634  0.26236  1.09861  0.40547
     62   1.46040  1.90510  2.76053  0.58737    194 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.01684  4.18792  6.48783  0.18972  1.75555  1.09861  0.40547
     63   1.24960  2.70290  0.78765  1.65309    196 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00312  6.48783  6.43960  1.46634  0.26236  1.09861  0.40547
     64   3.34990  0.60197  1.04980  2.70045    197 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48768  6.48768  1.46634  0.26236  1.06672  0.42180
     65   2.93624  0.64306  3.27564  0.95852    198 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48767  6.48767  1.46634  0.26236  1.09861  0.40547
     66   0.90795  1.78872  1.22776  1.99123    199 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48762  6.48762  1.46634  0.26236  1.09861  0.40547
     67   2.86957  0.82168  1.05612  1.85930    200 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00305  6.48762  6.48762  1.46634  0.26236  1.09861  0.40547
     68   2.05541  0.57617  1.35314  2.96645    201 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01217  6.48762  4.54977  1.46634  0.26236  1.09861  0.40547
     69   2.03385  0.81085  1.06529  2.52499    202 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00308  6.47853  6.47853  1.46634  0.26236  0.55493  0.85358
     70   1.86315  0.47044  1.79049  2.93347    203 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.00306  6.48486  6.48486  1.46634  0.26236  0.53765  0.87735
     71   0.33830  4.39474  2.86597  1.52440    204 A - - )
          1.38629  1.38629  1.38629  1.38629
          0.01534  4.29031  6.48762  0.20908  1.66777  1.09861  0.40547
     72   1.56065  2.47231  0.39793  3.38420    206 G - - :
          1.38629  1.38629  1.38629  1.38629
          0.86713  0.54500        *  1.09967  0.40494  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Glu
ACC      bact-Glu-r2-022416
STATES   230
NODES    61
CLEN     72
W        1280
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 14:10:07 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Glu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Glu-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Glu-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     11401
EFFN     11401.000000
CKSUM    3378220249
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -11.3132 0.71893
ECMLC    0.67150    -6.78083     2.27753     1600000      525856  0.002282
ECMGC    0.36675   -34.14116   -22.64329     1600000       27127  0.014745
ECMLI    0.63206    -6.72742     2.74195     1600000      477008  0.002516
ECMGI    0.37118   -32.45098   -21.19403     1600000       26104  0.015323
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1280  2769 -18.403 -19.648  -0.020  -6.154                 
    IL     1     1 2     1     4    17    39  1282  2771  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    18    40  1283  2773  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    253 - A - -
    MR     3     2 3     5     5    24    48  1283  2772  -6.783  -0.027 -18.246  -6.680 -19.350          1.345 -4.623  0.467 -4.762 
     D     4     2 3     5     5    15    36  1270  2760 -12.884  -8.239 -10.510 -11.941  -0.006         
    IR     5     5 3     5     5    21    48  1283  2772  -8.472  -0.006 -11.983 -10.151 -11.256          0.000  0.000  0.000  0.000 
                                             [ MATP    2 ]      1    251 G C - -
    MP     6     5 3    10     6    26    48  1282  2771 -19.345  -4.358  -0.072 -18.061 -18.340 -18.735 -7.004 -11.964 -13.143 -2.690 -6.899 -13.739 -1.533 -2.369 -11.580  3.431 -9.521  2.091 -3.043 -12.999 -3.090 -12.108 
    ML     7     5 3    10     6    18    40  1279  2768  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR     8     5 3    10     6    20    42  1278  2767 -14.099 -12.828  -1.360 -12.806  -0.714 -11.020 -2.410  1.903 -7.249 -3.907 
     D     9     5 3    10     6    15    36  1270  2760 -17.251 -15.949 -11.746 -12.428 -12.446  -0.001 
    IL    10    10 5    10     6    18    41  1281  2770  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    11    11 6    11     5    23    47  1281  2770 -10.866  -0.001 -14.377 -12.545 -13.651          0.000  0.000  0.000  0.000 
                                             [ MATP    3 ]      2    249 g c - -
    MP    12    11 6    16     6    25    46  1280  2769 -19.350 -19.290  -0.000 -18.066 -15.761 -18.741 -13.587 -13.006 -13.549 -0.351 -4.917 -14.335  1.857 -13.256 -13.516  2.430 -8.617  1.313  1.874 -12.080 -6.162 -9.524 
    ML    13    11 6    16     6    18    40  1277  2767  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    14    11 6    16     6    19    40  1275  2764 -13.392 -12.121  -8.030 -12.099  -0.007 -10.313 -0.856 -7.347  1.779 -6.713 
     D    15    11 6    16     6    15    36  1270  2760 -17.251 -15.949 -11.746 -12.428 -12.446  -0.001 
    IL    16    16 5    16     6    18    40  1279  2768  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    17    17 6    17     5    18    41  1279  2768  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    4 ]      3    248 C G - -
    MP    18    17 6    22     6    23    44  1278  2767 -19.350 -19.289  -0.004 -18.066  -8.350 -18.741 -16.218 -16.274 -15.637 -3.321 -10.222 -15.866  3.272 -14.939 -15.700 -1.249 -15.871 -3.441  2.517 -16.144 -11.751 -14.504 
    ML    19    17 6    22     6    18    40  1276  2765  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    20    17 6    22     6    18    39  1274  2763 -13.396 -12.125  -7.319 -12.103  -0.011 -10.316 -5.019 -3.048 -0.847  1.719 
     D    21    17 6    22     6    15    36  1270  2760 -17.251 -15.949  -9.726 -12.428 -12.446  -0.002 
    IL    22    22 5    22     6    18    40  1277  2766  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    23    23 6    23     5    18    40  1277  2766  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      4    247 C G - -
    MP    24    23 6    28     6    21    43  1276  2765 -19.346  -7.494  -0.052  -5.568  -6.838 -18.736 -16.088 -16.213 -15.537  0.562 -10.550 -15.772  3.414 -14.840 -15.599  1.210 -15.783 -14.301 -1.114 -15.996  0.125 -14.386 
    ML    25    23 6    28     6    18    39  1274  2764  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    26    23 6    28     6    17    38  1273  2762 -13.983 -12.712  -8.621 -12.690  -0.005 -10.904 -7.308 -9.081  1.996 -8.070 
     D    27    23 6    28     6    15    36  1270  2760 -17.249 -15.948 -11.745 -12.427 -12.444  -0.001 
    IL    28    28 5    28     6    18    40  1275  2765  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    29    29 6    29     5    21    42  1275  2764  -7.763  -0.010 -11.274  -9.442 -10.548          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      5    245 C G - -
    MP    30    29 6    34     6    20    41  1274  2763 -19.302 -19.241  -0.000 -14.649 -18.298 -18.693 -13.765 -13.476 -13.747  1.043 -12.593 -8.202  3.581 -13.257 -7.203 -3.327 -14.113 -7.537  0.635 -13.940 -1.739 -8.157 
    ML    31    29 6    34     6    19    40  1273  2762 -14.658 -15.004  -0.003  -9.412 -14.853 -12.383 -9.938  1.999 -10.551 -8.686 
    MR    32    29 6    34     6    16    37  1272  2761 -14.951 -13.680  -0.999 -13.658  -1.003 -11.871 -8.235 -10.007  1.998 -8.994 
     D    33    29 6    34     6    15    36  1270  2760 -17.249 -15.948 -11.745 -12.427 -12.444  -0.001 
    IL    34    34 5    34     6    17    39  1273  2763  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    35    35 6    35     5    17    38  1273  2762  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      6    244 c g - -
    MP    36    35 6    40     6    18    39  1272  2761  -4.265 -19.285  -0.078 -18.062 -18.342 -10.159 -13.763 -13.471 -13.750 -0.987 -8.490 -14.572  2.670 -13.262 -13.613  2.124 -14.118 -11.044  0.773 -4.217  1.584 -6.560 
    ML    37    35 6    40     6    16    37  1271  2760  -6.880  -7.226  -0.703  -1.635  -7.076  -4.606 -0.231 -0.523 -0.856  0.925 
    MR    38    35 6    40     6    15    36  1269  2759 -13.953 -12.682  -8.591 -12.660  -0.005 -10.874  1.428 -7.518  0.377 -7.430 
     D    39    35 6    40     6    15    36  1270  2760 -17.249 -15.948 -11.745 -12.427 -12.444  -0.001 
    IL    40    40 5    40     6    17    37  1271  2761 -11.851  -1.044  -0.958 -13.769 -14.545 -14.205  0.000  0.000  0.000  0.000 
    IR    41    41 6    41     5    15    36  1270  2760  -9.922  -8.010 -13.433  -1.272  -0.783          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      8    242 u a - -
    MP    42    41 6    46     4    16    37  1270  2759 -18.538 -18.745  -0.018  -6.358                 -13.480 -12.135 -13.310  1.262 -14.333 -13.938 -3.435 -13.938 -0.093  2.168 -13.971 -2.756  2.895 -4.666 -1.146 -12.257 
    ML    43    41 6    46     4    15    35  1269  2758  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    44    41 6    46     4    14    35  1268  2758  -1.700 -12.127  -9.995  -0.533                  1.454  0.282 -7.285 -4.681 
     D    45    41 6    46     4    15    36  1270  2760 -13.733  -0.087  -4.334  -6.853                 
    IL    46    46 5    46     4    16    36  1269  2758  -8.076  -8.760  -0.009 -11.245                  0.000  0.000  0.000  0.000 
    IR    47    47 6    47     3    16    37  1270  2760  -0.747  -1.308 -13.046                          0.000  0.000  0.000  0.000 
                                             [ MATL    9 ]     10      - U - - -
    ML    48    47 6    50     3    15    35  1268  2757  -7.245  -0.010 -18.136                         -6.600 -13.118 -6.255  1.991 
     D    49    47 6    50     3    13    33  1266  2756 -15.613  -1.810  -0.484                         
    IL    50    50 3    50     3    15    35  1268  2757  -6.961  -0.013  -9.661                          0.000  0.000  0.000  0.000 
                                             [ MATL   10 ]     12      - C - - -
    ML    51    50 3    53     2    14    34  1267  2756 -20.148  -0.000                                 -1.127  1.052  0.393 -2.682 
     D    52    50 3    53     2    13    33  1266  2755 -13.394  -0.000                                 
    IL    53    53 3    53     2    14    34  1267  2757  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    11 ]      -      - - - - -
     B    54    53 3   121    55    13    33  1266  2755                                                 
                                             [ BEGR   43 ]      -      - - - - -
     S    55    54 1    56     3     1     3   132   285 -19.518  -0.000 -18.172                         
    IL    56    56 2    56     3     1     3   137   290  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    195      - U - - -
    ML    57    56 2    59     3     1     3   132   285 -19.518  -0.125  -3.586                          0.313 -1.229 -2.248  1.084 
     D    58    56 2    59     3     0     1   147   300  -6.174  -1.687  -0.566                         
    IL    59    59 3    59     3     1     3   133   286  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    196      - A - - -
    ML    60    59 3    62     3     1     2   116   269  -6.786  -0.032  -6.277                          1.528 -4.756  0.109 -14.167 
     D    61    59 3    62     3     0     1   150   304  -0.578  -1.601 -11.743                         
    IL    62    62 3    62     3     1     2   154   307  -0.174  -3.142 -16.092                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]    216      - A - - -
    ML    63    62 3    65     3     1     1    25    43  -2.049  -0.511  -4.145                          1.806 -4.325 -1.832 -2.537 
     D    64    62 3    65     3     0     1    24    42 -14.539  -0.003  -8.931                         
    IL    65    65 3    65     3     1     3    25    43 -12.146  -0.000 -14.846                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    218      - C - - -
    ML    66    65 3    68     5     1     2    24    42 -18.368  -0.000 -18.184 -18.396 -19.287         -1.369  1.590 -2.243 -1.353 
     D    67    65 3    68     5     0     0    23    41 -14.732  -0.001 -13.993 -12.368 -10.705         
    IL    68    68 3    68     5     1     1    27    43  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   48 ]    219    238 A U - -
    MP    69    68 3    73     6     2     2    23    41  -6.649 -19.318  -0.045 -18.095  -5.604 -18.770 -13.344 -9.285 -8.844  3.125 -14.284 -13.759 -0.874 -2.388 -13.600  1.815 -13.847  0.591  0.536 -4.865 -5.261 -12.128 
    ML    70    68 3    73     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    71    68 3    73     6     1     1    24    41  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    72    68 3    73     6     0     0    23    41  -9.600  -8.299  -4.096  -4.778  -4.795  -0.210 
    IL    73    73 5    73     6     1     1    22    40  -9.509  -9.771  -0.005 -11.427 -12.203 -11.863  0.000  0.000  0.000  0.000 
    IR    74    74 6    74     5     1     1    25    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   49 ]    221    237 c g - -
    MP    75    74 6    79     6     2     2    21    39 -19.349 -19.288  -0.000 -18.065 -15.700 -18.740 -13.644 -13.329 -11.045 -2.150 -6.598 -14.483  2.678 -13.169 -13.505  2.298 -7.043  1.099  1.041 -13.820 -2.087 -8.875 
    ML    76    74 6    79     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    77    74 6    79     6     1     1    20    38 -15.190 -13.919  -0.003 -13.897  -9.031 -12.111 -9.935  1.999 -10.547 -8.682 
     D    78    74 6    79     6     0     0    22    41  -9.600  -8.299  -4.096  -4.778  -4.795  -0.210 
    IL    79    79 5    79     6     1     1    24    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    80    80 6    80     5     1     1    24    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   50 ]    222    236 G C - -
    MP    81    80 6    85     6     2     2    19    37  -7.403 -19.318  -0.009 -18.095 -18.375 -18.770 -17.201 -8.988 -19.067 -0.570 -18.731 -9.778  1.290 -18.862 -5.474  3.675 -11.670 -4.023 -13.464 -5.357 -15.514 -18.159 
    ML    82    80 6    85     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 6    85     6     1     1    24    42  -7.275  -6.004  -1.164  -5.982  -1.116  -4.196  0.032  0.321 -0.659  0.131 
     D    84    80 6    85     6     0     0    22    41  -9.600  -8.299  -4.096  -4.778  -4.795  -0.210 
    IL    85    85 5    85     6     1     1    19    37  -8.763  -9.025  -0.008 -10.681 -11.457 -11.117  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]    224    235 G C - -
    MP    87    86 6    91     6     2     2    16    35 -19.379 -19.318  -0.000 -18.095 -18.375 -18.770 -17.137 -8.074 -18.853 -0.003 -18.859 -15.164 -13.237 -18.542 -4.031  3.901 -15.512 -8.174 -13.577 -15.608 -15.651 -17.703 
    ML    88    86 6    91     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    90    86 6    91     6     0     0    22    40  -9.600  -8.299  -4.096  -4.778  -4.795  -0.210 
    IL    91    91 5    91     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    22    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    225    234 G C - -
    MP    93    92 6    97     4     2     2    14    33 -18.609 -18.816  -0.000 -17.230                 -17.327 -4.691 -19.730 -2.763 -18.951 -15.093 -13.238 -19.152 -15.305  3.980 -15.496 -7.933 -13.605 -5.003 -15.692 -18.864 
    ML    94    92 6    97     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    96    92 6    97     4     0     0    22    40  -5.090  -4.771  -2.787  -0.342                 
    IL    97    97 5    97     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   53 ]    226      - U - - -
    ML    99    98 6   101     3     1     1    12    30 -19.518  -0.000 -18.172                         -7.445 -7.383 -7.132  1.993 
     D   100    98 6   101     3     0     0    18    37  -6.869  -2.382  -0.323                         
    IL   101   101 3   101     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   54 ]    227      - U - - -
    ML   102   101 3   104     3     1     1    10    29 -19.518  -0.000 -18.172                         -5.952 -7.136 -3.837  1.966 
     D   103   101 3   104     3     0     0    17    36  -6.869  -2.382  -0.323                         
    IL   104   104 3   104     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]    228      - C - - -
    ML   105   104 3   107     3     1     1     9    28 -19.518  -0.000 -18.172                         -6.998  1.975 -5.436 -4.739 
     D   106   104 3   107     3     0     0    16    35  -6.869  -2.382  -0.323                         
    IL   107   107 3   107     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    229      - G - - -
    ML   108   107 3   110     3     1     1     8    26 -19.518  -0.000 -18.172                         -1.192 -6.995  1.826 -6.988 
     D   109   107 3   110     3     0     0    15    34  -6.869  -2.382  -0.323                         
    IL   110   110 3   110     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    230      - A - - -
    ML   111   110 3   113     3     1     1     6    24 -19.518  -0.000 -18.172                          1.992 -7.005 -6.998 -7.003 
     D   112   110 3   113     3     0     0    14    32  -6.869  -2.382  -0.323                         
    IL   113   113 3   113     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    231      - A - - -
    ML   114   113 3   116     3     1     1     5     9  -7.493  -0.008 -13.043                          1.199 -1.830 -0.820 -0.224 
     D   115   113 3   116     3     0     0     4     8  -6.869  -0.801  -1.261                         
    IL   116   116 3   116     3     1     1     5     9  -6.754  -0.016  -9.455                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    233      - U - - -
    ML   117   116 3   119     2     1     1     1     1       *   0.000                                 -5.458 -1.247 -7.328  1.828 
     D   118   116 3   119     2     0     0     0     0       *   0.000                                 
    IL   119   119 3   119     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    60 ]      -      - - - - -
     E   120   119 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   12 ]      -      - - - - -
     S   121    54 1   122     1     3    14  1244  2734   0.000                                         
                                             [ BIF    13 ]      -      - - - - -
     B   122   121 1   123   173     3    14  1244  2734                                                 
                                             [ BEGL   14 ]      -      - - - - -
     S   123   122 1   124     4     0     2    57   105  -0.017  -8.249  -6.905 -17.557                 
                                             [ MATP   15 ]     13     52 G C - -
    MP   124   123 1   128     6     2     6    57   105  -7.350 -19.302  -0.009 -18.078 -18.358 -18.753 -14.871 -13.440 -3.198  0.048 -16.357 -15.897 -1.500 -15.248 -14.770  3.738 -15.231  0.124 -3.763 -15.123 -13.488 -13.682 
    ML   125   123 1   128     6     1     2    55   103 -12.029 -12.376  -7.090  -0.013 -12.225  -9.755  1.992 -7.461 -6.766 -6.919 
    MR   126   123 1   128     6     1     1    53   101 -13.895 -12.624  -8.533 -12.602  -3.330  -0.156 -1.340  1.207 -5.849  0.355 
     D   127   123 1   128     6     0     0    52   100  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   128   128 5   128     6     1     2    56   104  -8.799  -9.061  -0.008 -10.717 -11.493 -11.153  0.000  0.000  0.000  0.000 
    IR   129   129 6   129     5     1     2    56   104  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   16 ]     15     51 U A - -
    MP   130   129 6   134     6     2     6    55   103 -19.362 -19.302  -0.000 -18.078 -12.743 -18.753 -16.367 -16.589 -15.712 -1.946 -14.081 -15.878  0.080 -14.987 -9.891  0.456 -15.939 -14.880  3.734 -10.265 -7.265 -14.607 
    ML   131   129 6   134     6     1     2    54   102 -12.029 -12.376  -7.090  -0.013 -12.225  -9.755 -7.131 -6.446 -8.078  1.992 
    MR   132   129 6   134     6     1     2    52   100 -10.617  -9.346  -5.255  -9.325  -0.052  -7.538  1.961 -5.126 -4.570 -4.832 
     D   133   129 6   134     6     0     0    52   100 -16.360 -15.058 -10.855  -0.641 -11.555  -1.483 
    IL   134   134 5   134     6     1     2    54   102  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   135   135 6   135     5     1     2    54   102  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   17 ]     16     50 C G - -
    MP   136   135 6   140     6     2     6    53   101 -19.362 -19.301  -0.000 -18.078 -18.358 -18.753 -16.195 -16.360 -8.921 -3.169 -9.023 -6.374  3.792 -14.900 -15.682 -0.457 -15.847 -14.519  0.096 -16.083 -2.160 -14.472 
    ML   137   135 6   140     6     1     2    53   101  -0.011 -13.671  -8.386  -8.080 -13.521 -11.051  1.996 -8.697 -7.945 -8.066 
    MR   138   135 6   140     6     1     2    51    99 -10.835  -9.564  -5.473  -9.542  -0.044  -7.756 -2.652 -2.676 -1.077  1.683 
     D   139   135 6   140     6     0     0    46    94 -14.882 -13.580  -9.377 -10.060 -10.077  -0.005 
    IL   140   140 5   140     6     1     2    52   100  -9.221  -9.483  -0.006 -11.139 -11.915 -11.575  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     2    52   100  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   18 ]     18     49 u g - -
    MP   142   141 6   146     4     2     6    51    99  -6.259 -18.811  -0.019 -17.225                  1.803 -2.654 -2.649 -2.653 -6.736 -15.883  1.019 -4.875  0.708 -12.823 -15.954 -15.002  0.135 -5.341  2.848 -7.140 
    ML   143   141 6   146     4     1     2    50    98  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   144   141 6   146     4     1     2    50    98  -8.848  -7.877  -0.062  -4.805                 -2.652 -2.676 -1.077  1.683 
     D   145   141 6   146     4     0     0    46    94 -10.306  -9.987  -8.003  -0.008                 
    IL   146   146 5   146     4     1     2    51    99  -9.220  -0.347  -2.240 -12.389                  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     3     1     2    50    98  -7.626  -0.008 -10.326                          0.000  0.000  0.000  0.000 
                                             [ MATL   19 ]     20      - A - - -
    ML   148   147 6   150     3     1     4    49    97 -19.514  -0.000 -18.168                          1.905 -14.700 -2.080 -5.803 
     D   149   147 6   150     3     0     0    46    93 -12.411  -7.924  -0.006                         
    IL   150   150 3   150     3     1     2    49    97  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   20 ]     21      - G - - -
    ML   151   150 3   153     3     1     3    48    96 -19.514  -0.000 -18.168                         -0.080 -3.990  1.527 -3.193 
     D   152   150 3   153     3     0     0    45    93 -12.411  -7.924  -0.006                         
    IL   153   153 3   153     3     1     2    49    96  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   21 ]     22      - u - - -
    ML   154   153 3   156     3     1     2    47    95  -2.328  -0.320 -18.168                         -0.134  0.293 -1.153  0.500 
     D   155   153 3   156     3     0     0    45    93 -12.411  -0.013  -6.803                         
    IL   156   156 3   156     3     1     2    47    95  -3.049  -0.186 -14.766                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     26      - G - - -
    ML   157   156 3   159     3     1     2    45    93  -7.296  -0.009 -18.172                         -6.810 -15.812  1.991 -5.911 
     D   158   156 3   159     3     0     0    43    91  -6.174  -1.687  -0.566                         
    IL   159   159 3   159     3     1     2    45    93  -6.947  -0.014  -9.647                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     28      - G - - -
    ML   160   159 3   162     3     1     2    44    92 -19.518  -0.000 -18.172                         -4.080 -7.311  1.974 -7.474 
     D   161   159 3   162     3     0     0    41    89  -6.174  -1.687  -0.566                         
    IL   162   162 3   162     3     1     1    45    93  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     29      - U - - -
    ML   163   162 3   165     3     1     1    43    91  -1.105  -1.503  -2.455                         -5.279  0.786 -6.074  1.160 
     D   164   162 3   165     3     0     0    33    81  -6.174  -1.687  -0.566                         
    IL   165   165 3   165     3     1     2    44    92  -0.554  -1.649 -17.455                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     46      - U - - -
    ML   166   165 3   168     3     1     1     5    24 -19.228  -0.000 -17.882                         -1.939 -0.326 -3.236  1.503 
     D   167   165 3   168     3     0     0     5    23 -18.482  -0.000 -12.874                         
    IL   168   168 3   168     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     47      - A - - -
    ML   169   168 3   171     2     1     1     1     1       *   0.000                                  1.922 -4.386 -3.285 -4.044 
     D   170   168 3   171     2     0     0     0     0       *   0.000                                 
    IL   171   171 3   171     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    27 ]      -      - - - - -
     E   172   171 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   28 ]      -      - - - - -
     S   173   122 1   174     3     0     4  1227  2716 -19.518  -0.000 -18.172                         
    IL   174   174 2   174     3     1     1  1228  2717  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     53      - A - - -
    ML   175   174 2   177     5     1     5  1227  2716  -7.476  -0.008 -18.266 -18.479 -19.370          1.266 -1.559  0.217 -3.418 
     D   176   174 2   177     5     0     0  1222  2712  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   177   177 3   177     5     1     1  1227  2716  -7.811  -0.010  -9.490 -11.322 -10.596          0.000  0.000  0.000  0.000 
                                             [ MATP   30 ]     55    194 C G - -
    MP   178   177 3   182     6     2     4  1226  2715  -6.932 -19.318  -0.012 -18.095 -18.375 -18.770 -13.715 -4.217 -13.711 -1.665 -2.910 -14.548  3.730 -10.694 -13.570 -2.742 -14.081 -4.626  0.066 -13.896 -0.015 -10.085 
    ML   179   177 3   182     6     1     1  1222  2712  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   180   177 3   182     6     1     1  1218  2707  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   181   177 3   182     6     0     0  1215  2704  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   182   182 5   182     6     1     2  1218  2708  -9.229  -9.491  -1.381 -11.147  -0.708 -11.583  0.000  0.000  0.000  0.000 
    IR   183   183 6   183     5     1     1  1224  2713  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   31 ]     57    193 C G - -
    MP   184   183 6   188     6     2     6  1224  2713  -7.508 -19.311  -0.008 -18.088 -18.367 -18.763 -13.684 -13.385 -13.682 -0.007 -1.275 -14.523  3.527 -13.200 -13.541 -0.158 -14.053 -2.902  0.742 -13.866 -2.490 -2.475 
    ML   185   183 6   188     6     1     1  1220  2710  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   186   183 6   188     6     1     1  1213  2702 -13.183 -11.912  -7.821 -11.891  -7.024  -0.018 -8.147 -7.304 -9.193  1.996 
     D   187   183 6   188     6     0     0  1213  2703  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   188   188 5   188     6     1     1  1223  2712  -8.652  -8.914  -0.009 -10.570 -11.346 -11.006  0.000  0.000  0.000  0.000 
    IR   189   189 6   189     5     1     1  1222  2712  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]     59    192 G C - -
    MP   190   189 6   194     6     2     5  1222  2711  -3.632 -19.311  -0.212  -4.156 -15.707 -18.763 -13.511 -12.158 -13.342  1.354 -14.426 -13.969  0.523 -13.990 -9.039  3.304 -14.006 -8.358  1.087 -10.300 -11.523 -8.329 
    ML   191   189 6   194     6     1     1  1218  2708  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   192   189 6   194     6     1     1  1218  2707  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   193   189 6   194     6     0     0  1212  2701 -15.790 -14.488 -10.285 -10.967 -10.985  -0.003 
    IL   194   194 5   194     6     1     5  1234  2723  -0.189  -3.024 -13.713 -17.450 -18.226 -17.886  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     5  1225  2715  -0.243  -2.692 -17.821 -15.988 -17.094          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     70    183 C G - -
    MP   196   195 6   200     6     2     5  1219  2708 -19.289  -6.407  -0.017 -18.004 -18.284 -18.679 -15.775 -14.816 -15.603 -5.379 -14.866 -16.596  3.486 -15.209 -15.403  2.072 -15.825 -3.616 -11.452 -16.458 -1.045 -14.345 
    ML   197   195 6   200     6     1     2  1217  2706 -16.092 -16.438 -11.153  -0.001 -16.288 -13.818  1.999 -11.313 -10.553 -10.647 
    MR   198   195 6   200     6     1     1  1216  2706  -7.279  -6.008  -1.160  -5.986  -1.120  -4.200  0.029  0.326 -0.663  0.130 
     D   199   195 6   200     6     0     0  1212  2701 -15.790 -14.488 -10.285 -10.967 -10.985  -0.003 
    IL   200   200 5   200     6     1     1  1218  2707  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1  1218  2707  -8.775  -0.005 -12.286 -10.454 -11.560          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     71    181 C G - -
    MP   202   201 6   206     4     2     3  1217  2706 -18.518 -18.725  -0.000 -17.140                 -14.357 -14.107 -14.256  0.569 -7.523 -14.949  3.540 -13.728 -14.155  1.240 -14.599 -6.089 -3.037 -14.495 -2.264 -2.526 
    ML   203   201 6   206     4     1     2  1216  2705 -13.176 -13.359  -0.001 -12.088                 -9.885 -11.648  1.999 -10.637 
    MR   204   201 6   206     4     1     1  1214  2703  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   205   201 6   206     4     0     0  1212  2701 -11.213 -10.894  -8.910  -0.004                 
    IL   206   206 5   206     4     1     1  1216  2706  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     3     1     1  1216  2705  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   35 ]     72      - C - - -
    ML   208   207 6   210     3     1     1  1215  2704 -19.511  -0.026  -5.820                         -5.424  1.227 -14.057  0.709 
     D   209   207 6   210     3     0     0  1212  2701 -13.322  -8.835  -0.003                         
    IL   210   210 3   210     3     1     1  1215  2704  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   36 ]     73      - U - - -
    ML   211   210 3   213     3     1     2  1214  2703 -19.485  -0.000 -18.139                         -13.064 -2.481 -6.924  1.931 
     D   212   210 3   213     3     0     0  1212  2701 -15.476 -10.989  -0.001                         
    IL   213   213 3   213     3     1     1  1214  2703  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     74      - u - - -
    ML   214   213 3   216     3     1     1  1213  2702 -19.485  -0.000 -18.139                          0.010 -0.251 -0.632  0.592 
     D   215   213 3   216     3     0     0  1212  2701 -15.476  -0.002  -9.868                         
    IL   216   216 3   216     3     1     1  1210  2699  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     75      - u - - -
    ML   217   216 3   219     3     1     1  1212  2701 -19.518  -0.000 -18.172                         -0.624  0.094 -0.219  0.511 
     D   218   216 3   219     3     0     0  1164  2653  -6.174  -1.687  -0.566                         
    IL   219   219 3   219     3     1     1  1207  2697  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     76      - u - - -
    ML   220   219 3   222     3     1     1  1211  2700 -19.518  -0.000 -18.172                          0.094 -0.091 -0.253  0.207 
     D   221   219 3   222     3     0     0  1126  2615  -6.174  -1.687  -0.566                         
    IL   222   222 3   222     3     1     1  1204  2693  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     77      - A - - -
    ML   223   222 3   225     3     1     1  1210  2699  -1.716  -0.523 -18.172                          1.666 -0.790 -3.467 -2.669 
     D   224   222 3   225     3     0     0   959  2448  -6.174  -1.687  -0.566                         
    IL   225   225 3   225     3     1     1  1305  2794  -0.018  -6.346 -21.541                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    180      - C - - -
    ML   226   225 3   228     2     1     1     1     1       *   0.000                                 -0.554  1.512 -3.549 -1.391 
     D   227   225 3   228     2     0     0     0     0       *   0.000                                 
    IL   228   228 3   228     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    42 ]      -      - - - - -
     E   229   228 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Glu
ACC   bact-Glu-r2-022416
LENG  72
MAXL  1266
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 14:10:07 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Glu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Glu-r2-022416.sto
NSEQ  11401
EFFN  25.195091
CKSUM 3378220249
STATS LOCAL MSV       -8.1212  0.71893
STATS LOCAL VITERBI   -9.0490  0.71893
STATS LOCAL FORWARD   -3.7847  0.71893
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51984  1.32278  1.24945  1.47755
          1.38629  1.38629  1.38629  1.38629
          0.00891  5.41774  5.41774  1.46634  0.26236  0.00000        *
      1   2.58498  2.86104  0.20127  3.00179      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00891  5.41774  5.41774  1.46634  0.26236  1.09861  0.40547
      2   2.46171  1.43147  0.82746  1.43299      2 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.00890  5.42120  5.41814  1.46634  0.26236  1.09861  0.40547
      3   3.35054  0.59891  2.73344  1.04832      3 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.01168  5.42118  4.93533  1.46634  0.26236  1.09963  0.40495
      4   2.25925  0.53396  1.85941  1.87386      4 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.01690  5.41844  4.39619  1.46634  0.26236  1.28886  0.32239
      5   2.03015  0.42135  3.04333  1.80274      5 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.00898  5.41052  5.41052  1.46634  0.26236  1.19829  0.35912
      6   2.71951  0.96993  1.38223  1.19084      6 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.03441  3.55408  5.25508  0.28549  1.39289  0.76679  0.62456
      7   1.79334  2.55422  1.04924  0.90229      8 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.02936  5.42322  3.70831  1.46634  0.26236  1.15432  0.37873
      8   4.03597  4.04836  4.41151  0.04841     10 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01494  4.56688  5.41655  0.70878  0.67775  1.21706  0.35112
      9   1.94224  0.78563  1.17957  2.37113     12 c - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00961  5.42311  5.26948  1.46634  0.26236  0.75954  0.63089
     10   2.15595  3.04949  0.22804  3.20067     13 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01438  4.61528  5.43179  0.72937  0.65819  1.55547  0.23710
     11   3.55855  2.26651  2.37033  0.25567     15 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.00892  5.43179  5.40278  1.46634  0.26236  0.85559  0.55344
     12   3.73161  0.22326  2.80227  2.15880     16 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01624  4.44382  5.43608  0.62624  0.76485  1.32262  0.30984
     13   1.44514  1.71698  1.88742  0.83651     18 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.02073  4.12497  5.43608  0.47261  0.97650  1.14406  0.38349
     14   0.08357  4.83181  2.80834  4.43118     20 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00874  5.43693  5.43693  1.46634  0.26236  1.26913  0.33000
     15   1.48781  3.45975  0.36317  3.05275     21 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00874  5.43693  5.43693  1.46634  0.26236  1.26913  0.33000
     16   1.40594  1.26644  2.04482  1.06820     22 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.20926  1.69031  5.43695  0.16802  1.86653  0.82589  0.57598
     17   4.85888  6.25356  0.01655  5.00166     26 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01455  4.59535  5.43936  0.71226  0.67439  1.09861  0.40547
     18   3.97116  5.54980  0.02878  5.17896     28 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43936  5.43936  1.46634  0.26236  1.09861  0.40547
     19   3.44942  0.88892  4.10637  0.61495     29 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.90184  0.85600  1.77595  1.14551  0.38282  1.09861  0.40547
     20   2.43879  1.64010  3.15596  0.39130     46 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01045  5.25908  5.25908  1.46634  0.26236  0.05002  3.02028
     21   0.09055  3.71786  3.36645  3.58358     47 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02061  4.29510  4.99612  0.54806  0.86292  1.09861  0.40547
     22   1.10614  2.47797  0.74857  2.18737     49 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01622  5.43693  4.44467  1.46634  0.26236  1.26913  0.33000
     23   2.36810  2.84581  0.19776  3.58689     50 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00881  5.42952  5.42952  1.46634  0.26236  1.65920  0.21108
     24   0.26837  2.40059  2.19043  3.41600     51 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.00881  5.42952  5.42952  1.46634  0.26236  0.71481  0.67195
     25   3.40740  0.31682  2.82461  1.71993     52 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00875  5.43638  5.43638  1.46634  0.26236  0.78288  0.61081
     26   0.54650  2.37350  1.30241  2.88240     53 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01386  4.66498  5.43936  0.75632  0.63373  1.09861  0.40547
     27   2.91609  0.34575  2.83262  1.71865     55 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01158  4.93750  5.43936  0.95463  0.48606  1.09861  0.40547
     28   2.45835  0.46087  2.29330  1.69960     57 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01838  4.67919  4.71901  0.76562  0.62558  1.09861  0.40547
     29   1.74316  2.31999  0.52091  2.01906     59 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.08525  2.55955  5.43154  2.08011  0.13344  1.39999  0.28316
     30   2.91373  0.46659  1.40057  2.62928     70 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00876  5.43475  5.43475  1.46634  0.26236  1.39753  0.28396
     31   2.24154  0.51366  1.68035  2.21552     71 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.00876  5.43477  5.43477  1.46634  0.26236  1.39999  0.28316
     32   3.51132  0.57332  4.41961  0.93026     72 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.02504  5.43476  3.89394  1.46634  0.26236  1.39999  0.28316
     33   4.08438  2.91303  4.43308  0.08667     73 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00891  5.41863  5.41863  1.46634  0.26236  2.04428  0.13866
     34   1.32560  1.57756  1.78634  1.02080     74 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00891  5.41863  5.41863  1.46634  0.26236  0.29968  1.35113
     35   1.61917  1.38495  1.57897  1.06301     75 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43936  5.43936  1.46634  0.26236  1.09861  0.40547
     36   1.28388  1.49476  1.59225  1.21987     76 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43936  5.43936  1.46634  0.26236  1.09861  0.40547
     37   0.26148  1.98578  3.33209  2.86296     77 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.33403  1.27431  5.43936  4.39022  0.01248  1.09861  0.40547
     38   1.78037  0.41168  3.37599  2.00468    180 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.06588  5.43937  2.82319  1.46634  0.26236  1.09861  0.40547
     39   2.57199  1.88192  0.43880  2.06742    181 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01999  4.18666  5.38272  0.52353  0.89753  2.75260  0.06589
     40   3.32076  1.40216  0.37400  3.51223    183 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.09000  2.50747  5.38273  1.85556  0.17004  0.21667  1.63578
     41   2.09527  0.55180  2.24673  1.63318    192 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00876  5.43477  5.43477  1.46634  0.26236  0.67964  0.70684
     42   1.79246  2.45566  0.45232  2.19380    193 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43936  5.43936  1.46634  0.26236  1.09861  0.40547
     43   2.10086  2.97584  0.27123  2.74569    194 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43936  5.43936  1.46634  0.26236  1.09861  0.40547
     44   1.18474  2.05365  2.47065  0.73110    195 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03410  5.43935  3.53412  1.46634  0.26236  1.09861  0.40547
     45   0.34358  4.06664  1.33523  4.55221    196 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.08268  2.74989  4.17218  2.05512  0.13705  0.26050  1.47258
     46   0.17206  3.55814  2.59458  2.90222    216 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.32593  1.50193  2.89230  0.03896  3.26458  0.45589  1.00480
     47   2.21040  0.36361  2.84173  1.98885    218 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00919  5.38754  5.38754  1.46634  0.26236  0.14733  1.98781
     48   0.82564  2.66621  0.95599  2.22471    219 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.03698  4.31565  3.77457  0.55810  0.84933  1.10016  0.40469
     49   2.90527  0.98055  0.96471  1.66564    221 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00890  5.42055  5.41734  1.46634  0.26236  0.32161  1.29091
     50   2.52107  2.01499  0.27892  3.51635    222 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01413  4.63685  5.43932  0.73825  0.64999  1.09801  0.40577
     51   2.78259  5.45162  0.07339  5.38291    224 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     52   3.91246  5.57096  0.02956  5.23390    225 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     53   4.17922  4.06599  4.59968  0.04344    226 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     54   3.87383  3.87100  3.71138  0.06834    227 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     55   4.73074  0.03673  4.60994  4.05736    228 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     56   2.24253  4.61658  0.13850  4.32267    229 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     57   0.01658  5.35822  5.07781  5.20246    230 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     58   0.65962  2.31778  1.89101  1.45439    231 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01391  4.67104  5.41564  0.76029  0.63023  1.09553  0.40701
     59   3.78604  2.26974  4.39864  0.14887    233 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00874  5.43925  5.43463  1.46634  0.26236  1.08288  0.41343
     60   5.46123  0.03218  5.41023  3.77434    234 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     61   4.80821  0.08432  5.22516  2.69830    235 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     62   3.70739  0.30526  1.97480  2.30524    236 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     63   1.82355  1.27485  0.92684  1.81235    237 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00872  5.43934  5.43934  1.46634  0.26236  1.10016  0.40469
     64   2.34582  1.19260  2.64575  0.63516    238 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.03508  3.52828  5.27507  0.55820  0.84919  1.09553  0.40701
     65   0.89673  1.23124  2.20067  1.66368    242 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.04402  3.62226  4.11407  0.29873  1.35386  0.99261  0.46300
     66   1.88879  1.41300  0.63936  2.55488    244 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.02807  5.42656  3.76014  1.46634  0.26236  1.74360  0.19224
     67   2.00462  3.21579  0.37792  1.96699    245 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01413  4.65155  5.40753  0.76838  0.62318  0.64054  0.74868
     68   2.44590  1.91254  0.42906  2.16694    247 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00884  5.42659  5.42659  1.46634  0.26236  1.74931  0.19103
     69   1.09215  2.91318  0.57809  3.01121    248 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00884  5.42659  5.42659  1.46634  0.26236  1.74931  0.19103
     70   1.49773  1.15384  1.37499  1.56975    249 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.05387  3.03559  5.42660  0.17398  1.83454  1.74931  0.19103
     71   3.28346  0.48421  2.78975  1.25567    251 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01714  4.37419  5.42658  0.59417  0.80301  0.42739  1.05616
     72   0.46620  3.89282  1.10779  3.81932    253 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.84919  0.55820        *  1.09156  0.40901  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Gly
ACC      bact-Gly-r2-022416
STATES   239
NODES    64
CLEN     75
W        1111
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 15:14:12 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gly-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gly-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gly-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     17424
EFFN     17424.000000
CKSUM    32522922
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -8.0469 0.71884
ECMLC    0.57388    -9.70058     1.42473     1600000      711133  0.001687
ECMGC    0.37726   -26.41556   -14.04643     1600000       42525  0.009406
ECMLI    0.54173   -10.11995     1.58095     1600000      679298  0.001767
ECMGI    0.39012   -25.03812   -13.19034     1600000       40683  0.009832
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1111  2403 -19.015 -20.260  -0.694  -1.389                 
    IL     1     1 2     1     4    11    31  1114  2406  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    12    33  1115  2407  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    227 - A - -
    MR     3     2 3     5     3    19    39  1114  2406 -19.729  -0.000 -18.047                          2.000 -15.354 -14.634 -14.684 
     D     4     2 3     5     3    10    28  1110  2402 -20.128 -15.306  -0.000                         
    IR     5     5 3     5     3    12    33  1114  2406  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    226 - C - -
    MR     6     5 3     8     3    18    38  1113  2405 -19.729  -0.000 -18.047                         -16.548  2.000 -17.867 -14.569 
     D     7     5 3     8     3    10    28  1110  2402 -20.128 -15.306  -0.000                         
    IR     8     8 3     8     3    12    33  1113  2405  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    225 - C - -
    MR     9     8 3    11     3    17    37  1112  2404 -19.729  -0.000 -18.047                         -16.548  2.000 -17.867 -14.569 
     D    10     8 3    11     3    10    28  1110  2402 -20.128  -0.127  -3.571                         
    IR    11    11 3    11     3    11    30  1112  2404  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    224 - U - -
    MR    12    11 3    14     5    17    36  1111  2403  -3.428  -0.146 -18.831  -8.262 -19.935         -1.875 -3.797 -6.827  1.867 
     D    13    11 3    14     5     9    23  1105  2397 -14.685 -10.040  -5.485 -13.742  -0.034         
    IR    14    14 3    14     5    16    36  1111  2403  -4.050  -0.090 -15.993 -14.161 -15.267          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      2    221 G C - -
    MP    15    14 3    19     6    16    35  1110  2401 -19.939 -19.878  -0.000 -18.655 -18.935 -13.968 -17.768 -14.499 -19.696 -2.888 -19.453 -15.696 -1.227 -19.310 -15.861  3.939 -16.065 -3.337 -14.148 -16.150 -16.226 -18.615 
    ML    16    14 3    19     6    12    31  1108  2400 -10.488 -10.834  -5.548  -0.039 -10.684  -8.213 -5.167  1.964 -5.674 -4.263 
    MR    17    14 3    19     6    13    28  1106  2398 -13.112 -11.841  -0.954 -11.819  -1.052 -10.033  0.993  0.382 -4.507 -0.595 
     D    18    14 3    19     6     9    22  1105  2397 -19.022 -17.720 -13.517 -14.199 -14.217  -0.000 
    IL    19    19 5    19     6    11    30  1109  2401  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    11    30  1108  2400  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      3    220 C G - -
    MP    21    20 6    25     6    16    33  1108  2399 -19.941 -19.881  -0.005 -18.657  -8.206 -19.332 -16.871 -17.027 -2.521 -5.690 -14.645 -16.445  3.817 -6.196 -16.332  0.397 -3.141 -6.692 -2.674 -16.755 -3.324 -15.132 
    ML    22    20 6    25     6    11    30  1107  2398 -10.488 -10.834  -0.046  -5.243 -10.684  -8.213 -5.167  1.964 -5.674 -4.263 
    MR    23    20 6    25     6    11    27  1103  2395 -12.078 -10.807  -6.716 -10.786  -0.019  -8.999 -4.149 -0.720  1.721 -4.669 
     D    24    20 6    25     6     9    22  1105  2397 -19.024 -17.723 -13.520  -0.273 -14.219  -2.539 
    IL    25    25 5    25     6    11    27  1107  2398  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    11    27  1106  2398  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      4    219 G C - -
    MP    27    26 6    31     6    14    31  1106  2397 -19.938 -19.877  -0.027  -5.733 -18.933 -19.328 -13.935 -5.635 -13.755 -0.379 -14.885 -5.881  0.412 -14.444 -14.183  3.775 -14.429 -3.990 -3.827 -4.976 -11.959 -7.452 
    ML    28    26 6    31     6    13    31  1107  2399  -0.002 -15.952 -10.667 -10.361 -15.802 -13.332  1.999 -10.841 -10.079 -10.177 
    MR    29    26 6    31     6    12    26  1102  2394 -13.708 -12.437  -1.692 -12.415  -0.536 -10.629 -2.149  1.836 -6.586 -2.360 
     D    30    26 6    31     6     9    20  1095  2387 -16.487 -15.185 -10.982 -11.664 -11.682  -0.002 
    IL    31    31 5    31     6    13    30  1106  2398  -1.001 -12.760  -1.000 -14.415 -15.191 -14.852  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    11    27  1104  2396  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      7    218 G C - -
    MP    33    32 6    37     6    12    29  1104  2396 -19.952 -19.891  -0.004 -18.667 -12.973  -8.688 -14.291 -9.206 -14.135  0.727 -15.267 -14.642 -1.536 -14.800 -10.609  3.676 -14.715 -5.238 -2.448 -13.961  0.006 -13.091 
    ML    34    32 6    37     6    13    26  1101  2393 -15.083 -15.429  -3.198  -0.167 -15.279 -12.809 -8.887 -10.657  1.999 -9.644 
    MR    35    32 6    37     6    12    24  1099  2391 -13.180 -11.909  -2.713 -11.887  -0.241 -10.101 -4.804  1.659 -1.680 -1.019 
     D    36    32 6    37     6     9    20  1095  2387 -16.487 -15.185 -10.982 -11.664 -11.682  -0.002 
    IL    37    37 5    37     6    11    26  1103  2394  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    11    26  1102  2394  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      8    217 g c - -
    MP    39    38 6    43     6    14    27  1102  2394 -19.952  -7.265  -0.024 -18.667  -6.669 -19.342 -3.052 -2.583 -13.733  2.517 -14.863 -14.329  1.105 -14.423 -5.269  2.780 -12.012 -0.874 -1.907 -4.824 -3.416 -10.618 
    ML    40    38 6    43     6    13    25  1100  2392 -14.918 -15.264  -9.979  -0.002 -15.114 -12.644 -8.725 -10.496  1.998 -9.483 
    MR    41    38 6    43     6    11    23  1098  2390 -13.008 -11.737  -6.386 -11.715  -0.020  -9.929 -7.239  1.991 -7.705 -6.282 
     D    42    38 6    43     6     9    20  1095  2387 -17.008 -15.706 -11.503 -12.185 -12.203  -0.001 
    IL    43    43 5    43     6    11    25  1101  2393  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    12    26  1101  2393  -8.581  -0.006 -12.093 -10.260 -11.366          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      9    215 a u - -
    MP    45    44 6    49     6    12    25  1100  2392  -5.812 -19.877  -0.074 -14.222 -18.933  -4.973 -9.367 -5.888 -11.963  2.998 -7.140 -15.073  1.248 -13.750 -5.896 -1.511 -10.087 -8.663  1.881 -4.047  0.580 -8.961 
    ML    46    44 6    49     6    12    24  1099  2391 -14.918 -15.264  -0.002  -9.673 -15.114 -12.644  1.999 -10.182 -9.417 -9.522 
    MR    47    44 6    49     6    10    22  1097  2389 -15.081 -13.810  -8.847 -13.788  -0.061  -4.674 -2.465 -0.088  0.984 -0.152 
     D    48    44 6    49     6     9    20  1095  2387 -17.008 -15.706 -11.503 -12.185 -12.203  -0.001 
    IL    49    49 5    49     6    13    24  1100  2391  -1.357 -11.873  -0.715 -13.529 -14.305 -13.965  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    11    24  1099  2391  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     12    214 g c - -
    MP    51    50 6    55     4    11    23  1098  2390 -19.145  -6.306  -0.038  -6.217                 -11.869 -10.834 -11.822  2.517 -14.841 -14.306 -1.514 -14.398 -4.106  2.766 -14.392  0.151  0.964 -13.565 -11.915 -11.053 
    ML    52    50 6    55     4    10    22  1097  2389  -4.684  -4.866  -0.245  -3.596                 -0.571 -1.597  1.317 -0.988 
    MR    53    50 6    55     4    10    21  1096  2388 -13.048 -12.077  -5.953  -0.024                 -9.227  1.587 -10.138 -0.009 
     D    54    50 6    55     4     9    20  1095  2387 -14.753 -14.435  -7.191  -0.010                 
    IL    55    55 5    55     4    10    23  1098  2390  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    11    23  1098  2390  -1.001  -0.999 -12.147                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     13      - U - - -
    ML    57    56 6    59     3    10    21  1096  2388 -20.036  -0.000 -18.690                         -5.638 -6.955 -5.745  1.983 
     D    58    56 6    59     3     9    20  1095  2387 -17.566  -0.003  -8.871                         
    IL    59    59 3    59     3     9    21  1096  2388  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     14      - A - - -
    ML    60    59 3    62     2     9    20  1095  2387 -20.786  -0.000                                  1.721 -1.777 -1.335 -6.128 
     D    61    59 3    62     2     8    19  1094  2386  -8.830  -0.003                                 
    IL    62    62 3    62     2     9    20  1095  2387  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64     8    19  1094  2386                                                 
                                             [ BEGR   45 ]      -      - - - - -
     S    64    63 1    65     3     1     2   246   539 -20.130  -0.000 -18.784                         
    IL    65    65 2    65     3     1     3   247   540  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]    139      - g - - -
    ML    66    65 2    68     3     1     2   246   539 -20.130  -0.451  -1.897                          0.326 -2.058  0.889 -0.610 
     D    67    65 2    68     3     0     1   232   525  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     2   250   543  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    140      - G - - -
    ML    69    68 3    71     3     1     1   250   543  -2.742  -0.272  -5.474                         -1.110 -1.997  1.472 -0.966 
     D    70    68 3    71     3     0     1   147   356 -19.652  -0.000 -13.284                         
    IL    71    71 3    71     3     1     2   279   573  -0.091  -4.094  -8.790                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    163      - G - - -
    ML    72    71 3    74     3     1     1   147   315 -20.100  -0.425  -1.970                         -1.344 -7.433  1.743 -1.978 
     D    73    71 3    74     3     0     0   145   313 -15.944 -11.457  -0.001                         
    IL    74    74 3    74     3     1     1   148   316  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    164      - U - - -
    ML    75    74 3    77     3     1     3   147   315 -19.675  -0.000 -18.329                         -0.004 -1.651 -1.743  1.254 
     D    76    74 3    77     3     0     0   145   313 -19.663  -0.091  -4.037                         
    IL    77    77 3    77     3     1     1   146   315  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    165      - C - - -
    ML    78    77 3    80     5     1     3   146   314 -19.039  -0.000 -13.869 -19.067 -19.958         -1.525  1.346 -4.567  0.097 
     D    79    77 3    80     5     0     0   116   262 -13.584  -9.428 -12.845  -9.846  -0.004         
    IL    80    80 3    80     5     1     1   145   313  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]    166    211 G U - -
    MP    81    80 3    85     6     2     4   145   313 -19.967 -19.906  -0.011 -15.923  -7.001 -15.116 -15.673 -4.811 -15.752  1.589 -5.931 -17.540  0.450 -15.978 -5.707  0.996 -14.284  3.252 -6.532 -16.399 -14.634 -5.562 
    ML    82    80 3    85     6     1     1   140   308  -7.628  -7.974  -1.698  -0.613  -7.824  -5.353 -0.841 -1.927  1.473 -1.312 
    MR    83    80 3    85     6     1     1   138   306  -7.298  -6.027  -1.936  -6.006  -0.627  -4.219 -0.009 -0.412 -0.610  0.678 
     D    84    80 3    85     6     0     0   116   254 -18.091 -16.789 -12.586 -13.268 -13.286  -0.001 
    IL    85    85 5    85     6     1     1   143   311  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1   143   311  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    167    210 C G - -
    MP    87    86 6    91     6     2     4   143   311  -7.114  -7.041  -0.022 -18.671 -18.951 -19.346 -7.376 -13.974 -7.439  0.887 -4.675 -10.698  3.515 -13.189 -14.129 -0.015 -14.641 -11.542  0.708 -14.454 -4.952 -6.034 
    ML    88    86 6    91     6     1     1   137   305  -7.595  -7.941  -2.655  -0.318  -7.791  -5.320  0.037  0.656 -1.056 -0.125 
    MR    89    86 6    91     6     1     2   134   302 -14.386 -13.115  -5.212 -13.093  -0.040 -11.307  1.961 -8.674 -3.319 -8.245 
     D    90    86 6    91     6     0     0   116   253 -18.093 -16.792 -12.589 -13.271 -13.288  -0.001 
    IL    91    91 5    91     6     1     2   143   311  -9.619  -0.009  -7.800 -11.537 -12.313 -11.973  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     3   142   310  -9.762  -0.003 -13.274 -11.441 -12.547          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    169    208 G C - -
    MP    93    92 6    97     6     2     4   141   309 -19.956 -19.895  -0.000 -18.672 -15.937 -19.346 -13.920 -10.976 -13.739  0.912 -14.869 -10.549 -0.415 -14.429 -13.435  3.595 -13.576 -2.750 -0.407 -1.474 -5.900 -12.704 
    ML    94    92 6    97     6     1     1   135   303  -7.595  -7.941  -2.655  -0.318  -7.791  -5.320 -0.800 -1.878  1.453 -1.264 
    MR    95    92 6    97     6     1     1   133   301 -14.349 -13.078  -1.128 -13.057  -8.190  -0.893 -7.039 -6.214  0.854  1.119 
     D    96    92 6    97     6     0     0   116   252 -18.093 -16.792 -12.589 -13.271 -13.288  -0.001 
    IL    97    97 5    97     6     1     1   139   307  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1   139   307  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    170    207 G C - -
    MP    99    98 6   103     6     2     4   139   307  -6.416 -19.900  -0.017 -18.677 -18.956 -19.351 -16.127 -6.158 -16.330  2.285 -17.924 -16.639 -3.593 -16.527 -5.048  3.372 -16.110 -7.161 -0.651 -16.330 -15.049 -15.044 
    ML   100    98 6   103     6     1     1   132   300  -7.595  -7.941  -1.775  -0.580  -7.791  -5.320  1.500 -1.645 -1.349 -1.125 
    MR   101    98 6   103     6     1     1   136   304  -7.363  -6.092  -1.062  -6.070  -1.204  -4.284 -0.044  0.442 -0.744  0.103 
     D   102    98 6   103     6     0     0   116   251 -18.410 -17.109 -12.906 -13.588 -13.605  -0.000 
    IL   103   103 5   103     6     1     3   138   306 -10.318 -10.581  -0.003 -12.236 -13.012 -12.673  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1   137   305  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    172    206 G C - -
    MP   105   104 6   109     4     2     2   137   305  -6.051  -3.597  -0.270  -3.777                 -17.817 -4.626 -19.839 -4.890 -19.489 -15.707 -13.819 -19.418 -15.884  3.896 -0.116 -3.940 -4.177 -16.165 -16.255 -18.792 
    ML   106   104 6   109     4     1     1   128   296  -4.680  -4.862  -0.245  -3.592                 -0.566 -1.591  1.314 -0.982 
    MR   107   104 6   109     4     1     1   135   302  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0   116   250 -13.832 -13.514 -11.529  -0.001                 
    IL   109   109 5   109     4     1     1   118   262  -1.001 -11.693 -10.441  -1.002                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1   157   325  -0.158  -3.718  -5.169                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    175      - U - - -
    ML   111   110 6   113     3     1     3    53   185 -19.932  -0.000 -13.007                         -5.701 -15.792 -18.589  1.993 
     D   112   110 6   113     3     0     0   116   248 -18.588 -14.101  -0.000                         
    IL   113   113 3   113     3     1     1   100   232  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    176      - U - - -
    ML   114   113 3   116     3     1     3    29   161 -19.932  -0.000 -18.586                         -13.476 -4.238 -3.288  1.943 
     D   115   113 3   116     3     0     0   116   248 -18.590  -9.872  -0.002                         
    IL   116   116 3   116     3     1     1   100   232  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    177      - C - - -
    ML   117   116 3   119     3     1     3    22   154 -19.932  -0.000 -18.586                         -6.207  1.983 -7.655 -5.081 
     D   118   116 3   119     3     0     0   116   248  -0.804  -2.173  -2.283                         
    IL   119   119 3   119     3     1     3   120   252  -0.202  -2.939 -16.699                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    189      - G - - -
    ML   120   119 3   122     3     1     2     8    26 -20.092  -0.000 -18.746                         -0.788 -6.359  1.767 -7.798 
     D   121   119 3   122     3     0     0     9    27 -16.305 -11.818  -0.000                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    190      - A - - -
    ML   123   122 3   125     3     1     1     6    25 -20.092  -0.000 -18.746                          1.968 -7.811 -3.941 -5.811 
     D   124   122 3   125     3     0     0     8    26 -16.305  -0.001 -10.697                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    191      - u - - -
    ML   126   125 3   128     3     1     1     5    23 -20.130  -0.001 -10.032                          0.195 -1.757 -0.181  0.746 
     D   127   125 3   128     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    192      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -4.169 -1.516 -7.355  1.843 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    63 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     2    10  1069  2361   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   182     2    10  1069  2361                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     2  1051  2343  -0.024  -7.152  -6.708 -18.169                 
                                             [ MATP   18 ]     15    115 G C - -
    MP   136   135 1   140     6     2     4  1052  2344  -6.128 -19.906  -0.023 -18.683 -18.962  -9.388 -14.167 -3.202 -14.003  0.399 -15.157 -14.618 -4.349 -14.665 -14.384  3.715 -14.652  0.315 -3.680 -4.266 -12.234 -5.783 
    ML   137   135 1   140     6     1     2  1017  2309 -13.722 -14.068  -8.782  -0.004 -13.918 -11.447  1.997 -9.063 -8.303 -8.420 
    MR   138   135 1   140     6     1     3   978  2269 -14.699 -13.428  -9.337 -13.406  -0.003 -11.620 -0.088 -4.464  1.138 -0.297 
     D   139   135 1   140     6     0     0   950  2242  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     3  1051  2343 -10.611 -10.874  -0.002 -12.529 -13.305 -12.966  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     2  1045  2337  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     17    114 C G - -
    MP   142   141 6   146     6     2     4  1050  2342 -19.965 -19.904  -0.005 -18.680  -8.256 -19.355 -14.533 -14.251 -14.502 -4.067 -11.129 -10.784  3.216 -14.005 -14.372 -0.982 -4.838 -11.833  2.354 -2.347 -0.373 -5.318 
    ML   143   141 6   146     6     1     1  1016  2308 -13.722 -14.068  -8.782  -0.695 -13.918  -1.397  1.997 -9.063 -8.303 -8.420 
    MR   144   141 6   146     6     1     2   976  2268 -14.699 -13.428  -9.337  -1.938  -0.440 -11.620 -4.637 -6.137 -0.519  1.699 
     D   145   141 6   146     6     0     0   903  2195 -14.630 -13.329  -9.126  -9.808  -0.029  -5.901 
    IL   146   146 5   146     6     1     1  1044  2335  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1  1042  2334  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     18    113 U A - -
    MP   148   147 6   152     6     2     4  1048  2340  -8.008 -19.899  -0.006 -18.676 -18.955 -19.350 -8.773 -4.339 -9.955  0.147 -6.221 -15.974 -4.497 -14.833 -0.602 -0.279 -5.468 -13.044  3.682 -3.421 -1.519 -14.085 
    ML   149   147 6   152     6     1     2  1048  2340  -0.155 -14.032  -3.339  -8.440 -13.881 -11.411  0.120  1.325 -1.353 -5.905 
    MR   150   147 6   152     6     1     2   903  2194 -14.993 -13.722  -2.991 -13.700  -0.195 -11.914  1.627 -1.007 -6.930 -1.304 
     D   151   147 6   152     6     0     0   663  1955 -15.488 -14.186  -9.983 -10.665 -10.683  -0.003 
    IL   152   152 5   152     6     1     3  1047  2339 -10.120 -10.383  -0.003 -12.038 -12.814 -12.475  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     1  1039  2330  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     20    112 C G - -
    MP   154   153 6   158     4     2     4  1046  2338 -19.202  -1.936  -0.437 -17.823                 -3.949 -14.021 -5.700 -5.035  0.135 -15.147  3.378 -9.447 -2.955 -4.302 -14.682 -6.295  0.334 -14.497  1.057 -0.228 
    ML   155   153 6   158     4     1     1   968  2259  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   156   153 6   158     4     1     1   573  1865 -12.826 -11.855  -3.167  -0.171                 -0.473 -6.433  1.490 -1.122 
     D   157   153 6   158     4     0     0   638  1930 -10.911 -10.592  -8.608  -0.005                 
    IL   158   158 5   158     4     1     1  1051  2343  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     4  1138  2430  -0.021  -6.142 -21.711                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     21      - A - - -
    ML   160   159 6   162     3     1     3    14    30 -20.113  -0.000 -18.767                          1.955 -3.230 -14.987 -5.833 
     D   161   159 6   162     3     0     0    13    32 -15.148 -10.661  -0.001                         
    IL   162   162 3   162     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     22      - G - - -
    ML   163   162 3   165     3     1     3    13    29 -20.113  -0.000 -18.767                          0.598 -6.573  1.280 -4.379 
     D   164   162 3   165     3     0     0    12    30 -15.148 -10.661  -0.001                         
    IL   165   165 3   165     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     23      - U - - -
    ML   166   165 3   168     3     1     2    12    28  -1.163  -0.853 -15.528                         -2.143 -0.835 -3.425  1.641 
     D   167   165 3   168     3     0     0     9    27 -15.148  -0.500  -1.772                         
    IL   168   168 3   168     3     1     1    11    27  -4.602  -0.101  -5.225                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     26      - G - - -
    ML   169   168 3   171     3     1     2     9    26 -20.107  -0.000 -18.761                         -3.312 -16.365  1.954 -5.383 
     D   170   168 3   171     3     0     0     9    28 -15.564  -9.246  -0.002                         
    IL   171   171 3   171     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     27      - G - - -
    ML   172   171 3   174     3     1     1     8    24 -20.107  -0.000 -18.761                         -5.633 -7.321  1.974 -4.475 
     D   173   171 3   174     3     0     0     8    26 -15.562  -0.001  -9.954                         
    IL   174   174 3   174     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     28      - U - - -
    ML   175   174 3   177     3     1     1     7    13  -2.635  -0.253 -18.784                         -5.545 -0.311 -5.450  1.655 
     D   176   174 3   177     3     0     0     5    12  -6.174  -1.687  -0.566                         
    IL   177   177 3   177     3     1     1     7    13  -4.293  -0.076 -14.964                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     31      - A - - -
    ML   178   177 3   180     2     1     1     1     1       *   0.000                                  1.967 -5.799 -4.567 -5.084 
     D   179   177 3   180     2     0     0     0     0       *   0.000                                 
    IL   180   180 3   180     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    29 ]      -      - - - - -
     E   181   180 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   30 ]      -      - - - - -
     S   182   134 1   183     3     0     1    23    41 -20.130  -0.006  -7.983                         
    IL   183   183 2   183     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   31 ]    116      - a - - -
    ML   184   183 2   186     5     1     1    23    41  -5.503  -0.033 -18.873 -19.085 -11.720          0.944 -1.336  0.422 -1.555 
     D   185   183 2   186     5     0     0    22    40 -11.536  -0.006 -10.797  -9.172  -9.085         
    IL   186   186 3   186     5     1     1    23    41 -10.362  -0.002 -12.041 -13.874 -13.147          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]    118    138 c g - -
    MP   187   186 3   191     6     2     4    22    40 -19.990 -19.930  -0.000 -18.706 -18.986 -19.381 -4.156 -8.632 -13.743  0.600 -1.836 -14.590  2.895 -7.116 -3.085 -0.146 -14.206  0.187  2.019 -2.081 -2.160 -5.410 
    ML   188   186 3   191     6     1     1    25    38  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   189   186 3   191     6     1     1    25    38  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   190   186 3   191     6     0     0    22    36 -12.429 -11.127  -6.924  -0.138  -7.624  -3.699 
    IL   191   191 5   191     6     1     1    27    40  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   192   192 6   192     5     1     1    26    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]    119    137 c g - -
    MP   193   192 6   197     6     2     3    20    38 -19.990 -19.930  -0.000 -18.706 -18.986 -19.381 -14.283 -8.533 -14.281  0.383 -8.357 -15.122  2.855 -4.565 -14.145  2.021 -14.656 -1.060  1.063 -6.870 -0.391 -6.263 
    ML   194   192 6   197     6     1     1    22    35  -9.319  -9.665  -4.379  -0.089  -9.515  -7.044 -3.244 -4.655  1.923 -3.986 
    MR   195   192 6   197     6     1     1    23    37  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   196   192 6   197     6     0     0    21    34  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   197   197 5   197     6     1     1    25    38  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     1    24    37  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    120    136 A U - -
    MP   199   198 6   203     6     2     3    18    36 -19.990 -19.930  -0.034  -5.426 -18.986 -19.381 -13.962 -12.601 -10.182  3.336 -14.910 -8.584 -1.874 -4.350 -14.218  1.584 -5.952 -0.499  0.892 -11.292 -11.985 -12.746 
    ML   200   198 6   203     6     1     1    20    34  -9.319  -9.665  -4.379  -4.074  -9.515  -0.171  1.920 -4.083 -3.571 -3.786 
    MR   201   198 6   203     6     1     1    21    35  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   202   198 6   203     6     0     0    19    33  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   203   203 5   203     6     1     1    23    36  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     1    22    36  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    121    135 g c - -
    MP   205   204 6   209     6     2     2    16    34  -5.205 -19.896  -0.040 -18.672 -18.952 -19.347 -13.974 -9.230 -13.817 -0.299 -11.210 -14.442  2.484 -7.597 -14.166  2.831 -14.457  0.829 -0.581 -13.710 -7.031 -6.227 
    ML   206   204 6   209     6     1     1    16    33 -15.442 -15.788  -6.496 -10.197  -0.018 -13.167 -10.946  1.999 -11.644 -9.559 
    MR   207   204 6   209     6     1     1    19    34  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   208   204 6   209     6     0     0    17    33 -12.429 -11.127  -0.133  -7.606  -7.624  -3.699 
    IL   209   209 5   209     6     1     1    16    34 -11.521  -0.003  -9.702 -13.439 -14.216 -13.876  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1    15    33 -10.632  -0.001 -14.143 -12.311 -13.416          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    123    133 C G - -
    MP   211   210 6   215     4     2     2    14    32 -19.187  -6.783  -0.013 -17.808                 -15.055 -14.813 -14.949 -3.631 -13.706 -15.635  3.716 -3.347 -14.850  0.527 -15.291 -6.649 -0.366 -15.192 -1.175 -6.974 
    ML   212   210 6   215     4     1     1    21    36  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   213   210 6   215     4     1     1    15    32 -13.988 -13.017 -10.884  -0.001                 -10.927  1.999 -11.623 -9.542 
     D   214   210 6   215     4     0     0    19    35  -4.568  -4.250  -2.265  -0.520                 
    IL   215   215 5   215     4     1     1    22    38  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     3     1     1    12    31  -8.022  -0.006 -10.722                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]    124      - U - - -
    ML   217   216 6   219     3     1     1    11    30 -20.097  -0.000 -18.751                         -7.219  0.549 -5.855  1.330 
     D   218   216 6   219     3     0     0    12    30 -16.109 -11.622  -0.000                         
    IL   219   219 3   219     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]    125      - U - - -
    ML   220   219 3   222     3     1     1    10    29 -20.097  -0.000 -18.751                         -2.943 -5.851 -5.813  1.939 
     D   221   219 3   222     3     0     0    11    29 -16.109 -11.622  -0.000                         
    IL   222   222 3   222     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    126      - u - - -
    ML   223   222 3   225     3     1     1     9    27 -20.097  -0.000 -18.751                         -0.156  0.037 -0.074  0.172 
     D   224   222 3   225     3     0     0     9    28 -16.109 -11.622  -0.000                         
    IL   225   225 3   225     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    127      - c - - -
    ML   226   225 3   228     3     1     1     7    26  -3.513  -0.233  -4.017                         -0.019  0.052 -0.065  0.029 
     D   227   225 3   228     3     0     0     6    25 -16.109 -11.622  -0.000                         
    IL   228   228 3   228     3     1     1     7    26 -11.278  -0.001 -13.978                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    129      - a - - -
    ML   229   228 3   231     3     1     1     6    25 -20.005  -0.000 -18.659                          0.131  0.126 -0.300  0.003 
     D   230   228 3   231     3     0     0     6    25 -17.964 -13.477  -0.000                         
    IL   231   231 3   231     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    130      - A - - -
    ML   232   231 3   234     3     1     1     5    23 -20.005  -0.099  -3.921                          1.857 -4.209 -1.671 -6.872 
     D   233   231 3   234     3     0     0     5    24 -17.964 -13.477  -0.000                         
    IL   234   234 3   234     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    131      - A - - -
    ML   235   234 3   237     2     1     1     1     1       *   0.000                                  1.920 -5.386 -2.816 -4.328 
     D   236   234 3   237     2     0     0     0     0       *   0.000                                 
    IL   237   237 3   237     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    44 ]      -      - - - - -
     E   238   237 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Gly
ACC   bact-Gly-r2-022416
LENG  75
MAXL  1087
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 15:14:13 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gly-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gly-r2-022416.sto
NSEQ  17424
EFFN  14.111835
CKSUM 32522922
STATS LOCAL MSV       -7.9036  0.71884
STATS LOCAL VITERBI   -9.4098  0.71884
STATS LOCAL FORWARD   -3.1212  0.71884
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50750  1.37631  1.26692  1.40923
          1.38629  1.38629  1.38629  1.38629
          0.19167  2.37773  2.50517  0.36933  1.17505  0.00000        *
      1   3.54836  3.64166  0.06678  4.64396      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01404  4.96957  4.96217  1.46634  0.26236  1.83946  0.17305
      2   2.95939  0.33167  2.14187  2.18046      3 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.01688  4.97095  4.62508  1.46634  0.26236  0.38362  1.14379
      3   2.06628  2.37353  0.32797  2.81660      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03666  3.53371  4.99073  0.85849  0.55130  1.06385  0.42331
      4   1.88550  2.80144  0.37088  2.32898      7 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01584  4.99200  4.71960  1.46634  0.26236  1.17560  0.36908
      5   1.20905  2.07223  0.69746  2.55404      8 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.02207  4.99030  4.19800  1.46634  0.26236  1.26785  0.33050
      6   1.05277  1.50950  2.20877  1.13889      9 a - - (
          1.38629  1.38629  1.38629  1.38629
          0.05677  3.82894  3.39762  0.79984  0.59675  1.55904  0.23615
      7   1.23688  2.74552  0.65499  2.07107     12 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02578  4.95513  3.99516  1.46634  0.26236  2.13955  0.12523
      8   3.49144  3.46080  3.93031  0.08501     13 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01435  4.94411  4.94411  1.46634  0.26236  0.21933  1.62485
      9   0.25050  2.52755  2.25965  3.28742     14 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02176  4.99934  4.21412  1.46634  0.26236  1.10362  0.40297
     10   1.92654  3.02502  0.29319  2.81494     15 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02730  3.96984  4.82129  0.61049  0.78325  1.43698  0.27134
     11   2.73824  0.73577  2.30396  1.03194     17 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01886  4.99000  4.43351  1.46634  0.26236  1.20493  0.35627
     12   2.07353  1.94396  1.89098  0.54438     18 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.02252  4.17063  4.98709  0.72940  0.65816  1.40302  0.28217
     13   2.47399  0.63880  2.29533  1.24793     20 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01373  4.98835  4.98835  1.46634  0.26236  1.39982  0.28321
     14   0.06604  3.50107  4.22795  3.95518     21 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01371  4.98933  4.98933  1.46634  0.26236  1.50239  0.25180
     15   1.01071  3.70485  0.55802  3.24180     22 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01371  4.98933  4.98933  1.46634  0.26236  1.50239  0.25180
     16   2.49624  1.95839  3.16314  0.30894     23 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.49963  0.95083  4.98697  0.04912  3.03792  0.78135  0.61210
     17   3.44015  5.07558  0.05319  4.30585     26 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02432  4.99648  4.05884  1.46634  0.26236  1.23259  0.34466
     18   4.02969  5.00028  0.04157  4.12271     27 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01376  4.98594  4.98594  1.46634  0.26236  0.51219  0.91425
     19   3.29040  1.71006  3.74951  0.27657     28 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.16320  1.93908  4.99945  0.13762  2.05127  1.09861  0.40547
     20   0.05653  4.18021  3.84028  4.00764     31 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.26858  1.48495  4.70761  4.24055  0.01450  1.09861  0.40547
     21   1.59463  2.51556  0.53196  2.04992    112 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01956  4.99715  4.37331  1.46634  0.26236  1.20564  0.35596
     22   0.58367  2.14104  1.70606  1.94464    113 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01496  4.99128  4.82131  1.46634  0.26236  1.16113  0.37562
     23   1.22626  2.37760  0.63162  2.49967    114 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01367  4.99218  4.99218  1.46634  0.26236  1.23453  0.34386
     24   3.07790  0.38518  2.81619  1.54280    115 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01709  4.99344  4.58860  1.46634  0.26236  0.72231  0.66481
     25   0.85067  2.08130  1.22263  1.87310    116 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03309  3.66792  4.95956  0.46547  0.98844  0.84766  0.55935
     26   1.87226  0.99180  1.72538  1.21332    118 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99919  4.99919  1.46634  0.26236  1.07442  0.41779
     27   2.16521  0.92816  1.37159  1.44269    119 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99944  4.99944  1.46634  0.26236  1.09861  0.40547
     28   0.81469  2.61929  1.04764  2.01287    120 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.01383  4.99944  4.96293  1.46634  0.26236  1.09861  0.40547
     29   2.14241  1.30992  0.67651  2.25955    121 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.05726  3.52996  3.63636  0.41003  1.08955  1.07442  0.41779
     30   2.98973  0.40283  2.10848  1.83353    123 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01385  4.97965  4.97965  1.46634  0.26236  1.77618  0.18547
     31   3.16331  1.10177  3.68526  0.51026    124 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01385  4.97965  4.97965  1.46634  0.26236  1.77618  0.18547
     32   2.99491  3.37619  3.89229  0.11050    125 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01385  4.97965  4.97965  1.46634  0.26236  1.77618  0.18547
     33   1.36862  1.45221  1.52422  1.22521    126 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01385  4.97965  4.97965  1.46634  0.26236  1.77618  0.18547
     34   1.31503  1.44746  1.51859  1.28248    127 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.15140  2.51078  2.82535  0.16152  1.90279  1.77618  0.18547
     35   1.25392  1.41407  1.63064  1.28859    129 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01462  4.92582  4.92582  1.46634  0.26236  2.60484  0.07679
     36   0.15459  3.49162  2.43920  3.66718    130 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.07255  4.92582  2.76897  1.46634  0.26236  1.85292  0.17053
     37   0.11147  3.67662  3.02089  3.46037    131 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01535  4.87733  4.87733  1.46634  0.26236  0.10507  2.30518
     38   2.13467  2.17841  0.35561  2.69189    133 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.05773  3.53021  3.61942  0.41003  1.08955  1.09861  0.40547
     39   2.47689  0.84420  1.26755  1.58682    135 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01385  4.97918  4.97918  1.46634  0.26236  0.41696  1.07601
     40   2.13748  1.20014  2.47419  0.69984    136 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99919  4.99919  1.46634  0.26236  1.11093  0.39936
     41   1.70661  1.50332  0.81019  1.88811    137 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99919  4.99919  1.46634  0.26236  1.11093  0.39936
     42   1.33121  2.04089  0.91880  1.57535    138 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99919  4.99919  1.46634  0.26236  1.07442  0.41779
     43   1.19508  2.31251  0.92210  1.60632    139 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.27728  4.99944  1.44639  1.46634  0.26236  1.09861  0.40547
     44   1.85599  2.45288  0.49337  1.91672    140 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.17010  2.04401  3.61513  2.76677  0.06493  0.05573  2.91490
     45   2.14601  3.62051  0.24844  2.57360    163 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.26546  4.98532  1.48584  1.46634  0.26236  1.62542  0.21919
     46   1.34365  2.05928  2.15740  0.70131    164 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01768  4.73754  4.73754  1.46634  0.26236  0.11626  2.20951
     47   2.16596  0.56014  3.32508  1.27919    165 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01377  4.98531  4.98531  1.46634  0.26236  1.62542  0.21919
     48   1.60157  2.29029  0.43752  2.96532    166 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02054  4.98531  4.30565  1.46634  0.26236  1.62542  0.21919
     49   2.05984  0.57129  2.16589  1.64465    167 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02009  4.34215  4.97864  0.85119  0.55671  1.77649  0.18540
     50   1.82655  2.59771  0.40138  2.35187    169 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01387  4.97881  4.97709  1.46634  0.26236  1.43608  0.27162
     51   1.32920  3.07047  0.48546  2.61045    170 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02395  4.08605  4.98178  0.68109  0.70535  1.72049  0.19721
     52   3.68819  4.82588  0.04488  4.52356    172 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.11347  3.92895  2.43487  0.59393  0.80330  1.72190  0.19690
     53   3.86213  3.89378  4.57983  0.05303    175 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02938  4.89760  3.84019  1.46634  0.26236  2.85434  0.05932
     54   3.49137  3.17265  3.35347  0.11352    176 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01526  4.88348  4.88348  1.46634  0.26236  0.62383  0.76763
     55   4.25332  0.04830  4.63947  3.76066    177 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.06901  2.81989  4.95160  2.08575  0.13263  0.76993  0.62184
     56   1.95593  3.98978  0.20258  3.75311    189 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01389  4.97672  4.97672  1.46634  0.26236  1.84564  0.17188
     57   0.04949  4.52129  3.74612  4.28296    190 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01389  4.97672  4.97672  1.46634  0.26236  0.37958  1.15249
     58   1.22602  2.12848  1.56809  0.97001    191 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01440  4.99944  4.88578  1.46634  0.26236  1.09861  0.40547
     59   3.25060  2.38476  3.96937  0.16222    192 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.10541  2.58039  3.71737  2.23523  0.11313  1.02429  0.44480
     60   4.57317  0.09568  3.06547  3.37287    206 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01383  4.98175  4.98004  1.46634  0.26236  1.72298  0.19666
     61   2.76200  0.52987  2.88482  1.23002    207 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01382  4.98174  4.98174  1.46634  0.26236  1.30940  0.31469
     62   2.66235  0.43463  2.45128  1.62694    208 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02651  3.94623  4.98525  0.60117  0.79445  1.62732  0.21872
     63   1.78094  2.28372  0.53537  1.93683    210 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01378  4.98525  4.98325  1.46634  0.26236  1.62231  0.21995
     64   3.17671  1.43942  2.20671  0.49241    211 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.05482  4.05812  3.32248  0.97898  0.47112  0.49946  0.93358
     65   2.17085  0.79093  2.58954  1.02878    214 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02859  4.96568  3.85318  1.46634  0.26236  0.38274  1.14568
     66   1.42222  2.33501  1.21258  1.00900    215 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.01945  4.39149  4.97886  0.88761  0.53041  1.67662  0.20703
     67   2.76514  0.77914  1.96130  1.08602    217 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.97886  4.75720  1.46634  0.26236  1.41575  0.27805
     68   3.01388  0.40701  2.25749  1.71120    218 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.97920  3.52219  1.46634  0.26236  0.47632  0.97039
     69   3.09187  0.35874  2.27569  1.87537    219 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01396  4.97166  4.97166  1.46634  0.26236  1.84064  0.17283
     70   2.43259  2.27334  0.28526  2.85757    220 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01396  4.97166  4.97166  1.46634  0.26236  1.83324  0.17423
     71   4.66509  0.08164  3.59185  3.18383    221 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.09720  2.45697  4.97172  0.20544  1.68355  1.83946  0.17305
     72   2.58260  3.10072  3.89652  0.15188    224 U - - :
          1.38629  1.38629  1.38629  1.38629
          0.13465  4.72054  2.14500  1.46634  0.26236  1.83946  0.17305
     73   4.61127  0.03609  5.01195  3.97103    225 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02018  4.60607  4.60607  1.46634  0.26236  2.91406  0.05578
     74   4.61127  0.03609  5.01195  3.97103    226 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02018  4.60607  4.60607  1.46634  0.26236  1.32961  0.30731
     75   0.02819  4.88857  4.50494  4.68701    227 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.02531  3.68931        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-His
ACC      bact-His-r2-022416
STATES   236
NODES    63
CLEN     74
W        1102
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 16:09:14 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-His-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-His-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-His-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     4731
EFFN     4731.000000
CKSUM    3642553722
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -13.0718 0.71884
ECMLC    0.69042    -7.32497     1.65725     1600000      592165  0.002026
ECMGC    0.26658   -46.78006   -31.94566     1600000       20869  0.019167
ECMLI    0.67116    -7.04989     2.07280     1600000      547357  0.002192
ECMGI    0.27406   -44.59920   -30.12310     1600000       21138  0.018923
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1102  2382 -17.134 -18.380  -0.011  -7.034                 
    IL     1     1 2     1     4    29    52  1106  2385  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    29    53  1106  2385  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    179 - C - -
    MR     3     2 3     5     5    29    53  1105  2384  -5.976  -0.052 -16.987  -5.663 -18.091         -0.466  1.542 -2.383 -2.531 
     D     4     2 3     5     5    25    49  1102  2381 -10.757  -6.112  -0.030  -9.814  -7.809         
    IR     5     5 3     5     5    30    54  1106  2385  -1.109  -0.901 -12.432 -10.599 -11.705          0.000  0.000  0.000  0.000 
                                             [ MATP    2 ]      1    176 G C - -
    MP     6     5 3    10     6    34    54  1104  2383 -18.072 -18.011  -0.000 -16.788 -17.067 -17.463 -14.153 -12.280 -14.191 -2.463 -14.611 -13.791 -0.293 -14.487 -13.631  3.759 -13.897 -0.727 -2.343 -13.652 -0.600 -13.089 
    ML     7     5 3    10     6    27    51  1102  2381 -11.972 -12.318  -7.033  -0.014 -12.168  -9.698  1.991 -7.403 -6.711 -6.866 
    MR     8     5 3    10     6    25    46  1101  2380 -13.858 -12.587  -2.547 -12.566  -0.273 -10.779 -7.329  1.660 -8.183 -0.267 
     D     9     5 3    10     6    22    42  1097  2376  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    10    10 5    10     6    25    47  1103  2382  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    11    11 6    11     5    25    47  1103  2382  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    3 ]      2    175 U A - -
    MP    12    11 6    16     6    32    52  1102  2381 -18.077 -18.016  -0.000 -16.793 -17.072 -17.467 -12.607 -12.323 -12.581 -0.598  0.699 -13.383  1.930 -7.354 -10.487  0.638 -8.662 -9.902  3.058 -12.778 -6.481 -11.172 
    ML    13    11 6    16     6    27    50  1101  2380 -11.972 -12.318  -0.016  -6.727 -12.168  -9.698  1.991 -7.403 -6.711 -6.866 
    MR    14    11 6    16     6    24    44  1099  2379 -13.592 -12.321  -8.230 -12.299  -0.027  -6.116  1.577 -5.953 -6.415 -0.016 
     D    15    11 6    16     6    22    41  1096  2375  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    16    16 5    16     6    25    46  1101  2380  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    17    17 6    17     5    25    47  1101  2380  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    4 ]      3    174 G C - -
    MP    18    17 6    22     6    30    50  1100  2379 -18.088 -18.027  -0.000 -16.804 -17.084 -17.479 -15.640 -12.653 -16.893 -1.314 -17.312 -13.942 -0.689 -16.734 -13.995  3.872 -14.231 -3.670 -1.980 -14.349 -14.207 -15.667 
    ML    19    17 6    22     6    24    44  1098  2377  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    20    17 6    22     6    24    44  1098  2378 -13.572 -12.301  -0.416 -12.280  -6.762  -2.054 -0.105  1.610 -7.640 -6.306 
     D    21    17 6    22     6    22    41  1095  2374 -10.614  -9.312  -5.109  -5.791  -5.809  -0.100 
    IL    22    22 5    22     6    24    45  1099  2378  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    23    23 6    23     5    24    46  1099  2378  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      4    173 G C - -
    MP    24    23 6    28     6    28    48  1098  2377 -18.106 -18.045  -0.000 -16.821 -17.101 -17.496 -12.072 -6.093 -11.891  1.069 -13.022 -12.487 -0.053 -12.581 -12.329  3.271 -12.575  1.107 -0.915 -11.745 -7.986 -0.788 
    ML    25    23 6    28     6    23    42  1096  2375  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    26    23 6    28     6    23    43  1096  2376  -7.390  -6.119  -1.033  -6.097  -1.231  -4.311 -0.067  0.477 -0.768  0.093 
     D    27    23 6    28     6    22    41  1095  2374 -14.248 -12.946  -8.743  -9.425  -0.119  -3.734 
    IL    28    28 5    28     6    23    43  1097  2376  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    29    29 6    29     5    23    43  1097  2376  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      5    172 c g - -
    MP    30    29 6    34     6    26    46  1096  2375 -18.106 -18.045  -0.000 -16.821 -17.101 -17.496 -12.399 -8.114 -12.397  0.370 -8.178 -13.238  2.535 -11.926 -12.261  1.301 -12.772  1.798  0.498 -12.575 -0.297 -0.441 
    ML    31    29 6    34     6    22    42  1094  2373  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    32    29 6    34     6    24    44  1095  2374 -11.575 -10.304  -0.041 -10.282  -5.416  -8.496  1.983 -6.357 -5.740 -5.947 
     D    33    29 6    34     6    19    39  1089  2369 -10.614  -9.312  -5.109  -5.791  -5.809  -0.100 
    IL    34    34 5    34     6    23    43  1095  2374  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    35    35 6    35     5    23    43  1095  2374  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      6    171 U A - -
    MP    36    35 6    40     6    24    44  1094  2373  -3.818 -18.051  -0.106 -16.827 -17.107 -17.502 -12.695 -12.414 -12.662 -0.570 -11.492 -13.454  1.290 -7.853 -12.534 -0.605 -13.025 -9.997  3.541 -3.713 -2.145 -1.858 
    ML    37    35 6    40     6    22    42  1092  2372  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    38    35 6    40     6    22    41  1092  2371  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    39    35 6    40     6    19    39  1089  2368 -10.614  -9.312  -5.109  -5.791  -5.809  -0.100 
    IL    40    40 5    40     6    23    42  1094  2373  -1.487  -2.444  -1.247 -13.618 -14.394  -4.712  0.000  0.000  0.000  0.000 
    IR    41    41 6    41     5    23    43  1093  2372  -8.385  -0.007 -11.896 -10.064 -11.170          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      9    169 G C - -
    MP    42    41 6    46     4    22    42  1092  2371 -17.334 -17.541  -0.000 -15.955                 -13.957 -12.024 -14.021  0.956 -15.096 -13.574 -3.804 -14.572 -13.487  3.674 -13.741 -2.344 -0.006 -5.202 -12.139 -12.950 
    ML    43    41 6    46     4    21    40  1091  2370  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    44    41 6    46     4    21    40  1090  2370  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    45    41 6    46     4    19    39  1089  2368  -9.778  -9.459  -4.182  -0.086                 
    IL    46    46 5    46     4    22    41  1092  2371  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    47    47 6    47     3    21    41  1091  2371  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL    9 ]     10      - U - - -
    ML    48    47 6    50     3    20    40  1090  2369 -18.244  -0.000 -16.898                         -3.716 -4.356 -4.676  1.940 
     D    49    47 6    50     3    19    39  1089  2368 -11.806  -0.020  -6.198                         
    IL    50    50 3    50     3    20    40  1090  2370  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   10 ]     11      - A - - -
    ML    51    50 3    53     2    19    39  1089  2368 -18.906  -0.000                                  1.497 -4.682  0.119 -4.261 
     D    52    50 3    53     2    18    38  1088  2367  -8.445  -0.004                                 
    IL    53    53 3    53     2    19    39  1089  2369  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    11 ]      -      - - - - -
     B    54    53 3   124    55    18    38  1088  2367                                                 
                                             [ BEGR   44 ]      -      - - - - -
     S    55    54 1    56     3     1     6   150   323 -18.250  -0.000 -16.904                         
    IL    56    56 2    56     3     1     7   155   327  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    124      - u - - -
    ML    57    56 2    59     3     1     6   150   323 -18.250  -0.167  -3.195                          0.303 -0.625 -1.265  0.767 
     D    58    56 2    59     3     0     5   165   337  -6.174  -1.687  -0.566                         
    IL    59    59 3    59     3     1     6   149   322  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]    125      - u - - -
    ML    60    59 3    62     3     1     5   132   304  -6.222  -0.027  -7.603                         -0.276 -2.214  0.543  0.586 
     D    61    59 3    62     3     0     5   169   341  -0.388  -2.088 -10.866                         
    IL    62    62 3    62     3     1     6   171   343  -0.154  -3.413  -7.064                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    144      - G - - -
    ML    63    62 3    65     3     1     4    49    94 -18.233  -0.141  -3.427                         -3.474 -2.569  1.623 -0.596 
     D    64    62 3    65     3     0     3    48    93 -13.251  -0.499  -1.776                         
    IL    65    65 3    65     3     1     5    50    95  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    145      - U - - -
    ML    66    65 3    68     3     1     4    48    94 -18.105  -0.006  -7.859                         -2.036 -3.196 -1.287  1.695 
     D    67    65 3    68     3     0     3    47    93 -16.277  -0.001 -10.669                         
    IL    68    68 3    68     3     1     2    49    94  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    146      - C - - -
    ML    69    68 3    71     5     1     4    47    93 -17.177  -0.002 -16.992  -9.483 -18.096         -2.902  1.685 -4.290 -0.737 
     D    70    68 3    71     5     0     0    42    87  -9.674  -5.518  -8.935  -0.047  -7.223         
    IL    71    71 3    71     5     1     1    47    93  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   50 ]    147    168 G U - -
    MP    72    71 3    76     6     2     5    46    92 -18.104 -18.043  -0.000 -16.820 -17.100 -17.495 -14.152 -6.713 -14.346 -0.730 -16.466 -17.620 -0.868 -14.388 -13.907  1.001 -5.665  3.671 -3.695 -15.647 -13.759 -12.945 
    ML    73    71 3    76     6     1     1    45    90  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    74    71 3    76     6     1     1    41    87 -11.999 -10.728  -6.637  -1.970  -0.450  -8.920 -0.078 -3.839 -4.552  1.556 
     D    75    71 3    76     6     0     0    40    86  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    76    76 5    76     6     1     1    45    91  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    77    77 6    77     5     1     1    45    91  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]    148    167 u a - -
    MP    78    77 6    82     6     2     5    44    90  -7.023 -18.043  -0.011 -16.820 -17.100 -17.495 -12.400 -4.365 -4.181  1.229 -5.148 -13.244  2.420 -11.919 -12.258 -0.347 -12.772 -6.302  2.861 -5.659 -4.148 -5.027 
    ML    79    77 6    82     6     1     1    43    88  -9.635  -9.982  -0.085  -4.390  -9.831  -7.361  1.942 -4.536 -4.002 -4.254 
    MR    80    77 6    82     6     1     1    37    82 -11.575 -10.304  -6.213 -10.282  -0.026  -8.496  1.983 -6.357 -5.740 -5.947 
     D    81    77 6    82     6     0     0    39    84  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    82    82 5    82     6     1     1    43    89  -7.884  -8.147  -0.015  -9.802 -10.579 -10.239  0.000  0.000  0.000  0.000 
    IR    83    83 6    83     5     1     1    43    89  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    150    166 G C - -
    MP    84    83 6    88     6     2     5    42    88 -18.106 -18.045  -0.000 -16.822 -17.102 -17.497 -13.137 -3.168 -13.051 -0.114 -14.169 -13.195 -0.045 -13.683 -13.058  3.724 -7.715 -0.540 -3.458 -12.715 -11.232 -11.999 
    ML    85    83 6    88     6     1     1    39    85  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    86    83 6    88     6     1     1    35    80 -11.575 -10.304  -6.213  -0.060  -5.416  -8.496 -5.715  1.975 -6.178 -4.823 
     D    87    83 6    88     6     0     0    37    83  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    88    88 5    88     6     1     1    41    87  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    89    89 6    89     5     1     1    41    87  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    151    165 G C - -
    MP    90    89 6    94     6     2     5    40    86 -18.106 -18.045  -0.000 -16.822 -17.102 -17.497 -15.873 -12.671 -17.600 -1.628 -17.523 -13.887 -1.836 -17.272 -14.027  3.939 -14.238 -8.657 -4.155 -14.333 -14.345 -16.460 
    ML    91    89 6    94     6     1     1    33    78 -11.032 -11.378  -6.093  -0.027 -11.228  -8.758 -5.528 -5.039 -6.373  1.977 
    MR    92    89 6    94     6     1     1    39    84  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    93    89 6    94     6     0     0    37    82  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    94    94 5    94     6     1     1    40    85  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    95    95 6    95     5     1     1    39    85  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    152    164 G C - -
    MP    96    95 6   100     4     2     4    38    84  -4.704 -17.542  -0.056 -15.956                 -16.029 -12.663 -18.317 -2.771 -17.666 -13.828 -11.965 -17.789 -14.031  3.982 -4.252 -10.594 -12.328 -14.295 -14.414 -17.388 
    ML    97    95 6   100     4     1     1    31    77  -8.133  -8.316  -0.021  -7.045                 -5.528 -5.039 -6.373  1.977 
    MR    98    95 6   100     4     1     1    37    82  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    99    95 6   100     4     0     0    36    82  -4.568  -4.250  -2.265  -0.520                 
    IL   100   100 5   100     4     1     2    44    90  -0.586  -1.586 -10.516 -14.254                  0.000  0.000  0.000  0.000 
    IR   101   101 6   101     3     1     1    14    32  -8.246  -7.602  -0.012                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]    156      - U - - -
    ML   102   101 6   104     3     1     4    13    31 -18.193  -0.000 -16.848                         -5.383 -13.923 -16.368  1.991 
     D   103   101 6   104     3     0     0    13    31 -14.962 -10.475  -0.001                         
    IL   104   104 3   104     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    157      - U - - -
    ML   105   104 3   107     3     1     3    12    30 -18.193  -0.000 -16.848                         -15.093 -13.933 -5.345  1.991 
     D   106   104 3   107     3     0     0    12    30 -14.962 -10.475  -0.001                         
    IL   107   107 3   107     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    158      - C - - -
    ML   108   107 3   110     3     1     2    10    29 -18.193  -0.000 -16.848                         -15.173  2.000 -16.350 -13.290 
     D   109   107 3   110     3     0     0    11    29 -14.962 -10.475  -0.001                         
    IL   110   110 3   110     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    159      - G - - -
    ML   111   110 3   113     3     1     1     9    27 -18.193  -0.000 -16.848                         -0.150 -13.982  1.631 -13.336 
     D   112   110 3   113     3     0     0    10    28 -14.962  -0.002  -9.353                         
    IL   113   113 3   113     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    160      - A - - -
    ML   114   113 3   116     3     1     1     8    26 -18.250  -0.000 -16.904                          1.966 -7.013 -3.862 -6.009 
     D   115   113 3   116     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   116   116 3   116     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    161      - G - - -
    ML   117   116 3   119     3     1     1     6    24 -18.250  -0.000 -16.904                         -0.351 -4.134  1.257 -0.379 
     D   118   116 3   119     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   119   119 3   119     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    162      - U - - -
    ML   120   119 3   122     2     1     1     1     1       *   0.000                                 -2.978 -0.489 -2.654  1.586 
     D   121   119 3   122     2     0     0     0     0       *   0.000                                 
    IL   122   122 3   122     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    62 ]      -      - - - - -
     E   123   122 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   12 ]      -      - - - - -
     S   124    54 1   125     1     4    16  1065  2344   0.000                                         
                                             [ BIF    13 ]      -      - - - - -
     B   125   124 1   126   179     4    16  1065  2344                                                 
                                             [ BEGL   14 ]      -      - - - - -
     S   126   125 1   127     4     0     4    26    41  -0.004 -16.241  -8.384 -16.289                 
                                             [ MATP   15 ]     12     32 G C - -
    MP   127   126 1   131     6     2     6    26    41 -18.107 -18.047  -0.018 -16.823  -6.373 -17.498 -5.321 -12.620 -15.031 -0.935 -16.520 -14.501 -2.381 -15.159 -13.897  3.803 -14.285  0.322 -4.220 -14.518 -13.602 -13.730 
    ML   128   126 1   131     6     1     2    25    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   129   126 1   131     6     1     4    25    40 -11.207  -9.936  -0.053  -9.914  -5.048  -8.128  1.977 -5.900 -5.311 -5.543 
     D   130   126 1   131     6     0     1    23    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   131   131 5   131     6     1     2    26    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   132   132 6   132     5     1     2    26    40  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   16 ]     13     31 C G - -
    MP   133   132 6   137     6     2     6    24    39 -18.094 -18.033  -0.000 -16.810 -17.090 -17.485 -15.152 -15.434 -14.469 -11.671 -12.820 -14.613  3.579 -0.647 -3.246 -11.642 -14.693 -13.838  1.422 -14.986 -0.672 -13.375 
    ML   134   132 6   137     6     1     2    24    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   135   132 6   137     6     1     4    22    38 -13.164 -11.893  -7.801 -11.871  -0.009 -10.084 -8.115 -7.277 -9.157  1.996 
     D   136   132 6   137     6     0     1    22    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   137   137 5   137     6     1     2    25    39  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   138   138 6   138     5     1     2    24    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   17 ]     14     30 U A - -
    MP   139   138 6   143     6     2     6    22    37 -18.094 -18.033  -0.000 -16.810 -17.090 -17.485 -15.090 -5.165 -14.445 -5.229 -12.829 -14.624  0.010 -13.727 -14.532  1.977 -14.672 -13.472  3.444 -14.965 -3.095 -13.338 
    ML   140   138 6   143     6     1     2    23    39  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   141   138 6   143     6     1     3    21    37 -13.164 -11.893  -7.801 -11.871  -0.009 -10.084 -8.115 -7.277 -9.157  1.996 
     D   142   138 6   143     6     0     1    21    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   143   143 5   143     6     1     2    23    38  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   144   144 6   144     5     1     2    22    38  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   18 ]     15     29 C G - -
    MP   145   144 6   149     4     2     6    20    35 -17.323 -17.530  -0.000 -15.944                  1.675 -4.467 -14.468 -7.058 -2.204 -5.849  3.432 -5.563 -0.228 -11.637 -14.692 -13.832 -0.948 -14.984 -1.765 -4.812 
    ML   146   144 6   149     4     1     2    22    39  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   147   144 6   149     4     1     2    20    36 -11.187  -0.016  -8.083  -7.144                 -6.548 -8.312  1.993 -7.308 
     D   148   144 6   149     4     0     1    21    38  -4.568  -4.250  -2.265  -0.520                 
    IL   149   149 5   149     4     1     2    23    39  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   150   150 6   150     3     1     4    19    34  -6.607  -0.017  -9.307                          0.000  0.000  0.000  0.000 
                                             [ MATL   19 ]     16      - A - - -
    ML   151   150 6   153     3     1     4    18    33 -18.250  -0.000 -16.904                          1.974 -13.883 -6.273 -4.071 
     D   152   150 6   153     3     0     1    20    39  -6.174  -1.687  -0.566                         
    IL   153   153 3   153     3     1     2    24    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   20 ]     17      - G - - -
    ML   154   153 3   156     3     1     3    17    32 -18.250  -0.000 -16.904                         -0.338 -4.108  1.647 -5.655 
     D   155   153 3   156     3     0     1    19    38  -6.174  -1.687  -0.566                         
    IL   156   156 3   156     3     1     2    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   21 ]     18      - U - - -
    ML   157   156 3   159     3     1     2    16    31 -18.250  -0.740  -1.318                         -0.952 -1.406 -2.522  1.552 
     D   158   156 3   159     3     0     1    18    37  -6.174  -1.687  -0.566                         
    IL   159   159 3   159     3     1     2    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     19      - U - - -
    ML   160   159 3   162     3     1     2    15    30  -4.996  -0.046 -16.164                         -3.888 -1.715 -2.719  1.797 
     D   161   159 3   162     3     0     1    14    29 -18.351  -0.001 -10.267                         
    IL   162   162 3   162     3     1     2    15    30  -7.233  -0.011  -9.933                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     21      - G - - -
    ML   163   162 3   165     3     1     2    14    29 -18.249  -0.000 -16.903                         -2.400 -14.434  1.925 -6.186 
     D   164   162 3   165     3     0     0    15    33  -8.203  -0.267  -2.594                         
    IL   165   165 3   165     3     1     1    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     22      - G - - -
    ML   166   165 3   168     3     1     2    13    27 -18.250  -0.000 -16.904                         -12.782 -14.521  2.000 -13.515 
     D   167   165 3   168     3     0     0    15    34  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     23      - U - - -
    ML   169   168 3   171     3     1     1    12    26  -5.287  -0.972  -1.106                         -4.914  0.533 -12.257  1.333 
     D   170   168 3   171     3     0     0    11    24  -6.174  -1.687  -0.566                         
    IL   171   171 3   171     3     1     2    14    27  -2.111  -0.381 -10.747                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     26      - U - - -
    ML   172   171 3   174     3     1     1     7    25 -17.349  -0.000 -16.003                         -0.799 -1.680 -2.522  1.555 
     D   173   171 3   174     3     0     0     5    23 -18.562  -0.000 -12.954                         
    IL   174   174 3   174     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     27      - A - - -
    ML   175   174 3   177     2     1     1     1     1       *   0.000                                  1.812 -5.742 -1.249 -4.357 
     D   176   174 3   177     2     0     0     0     0       *   0.000                                 
    IL   177   177 3   177     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    28 ]      -      - - - - -
     E   178   177 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   29 ]      -      - - - - -
     S   179   125 1   180     3     0     0  1049  2328 -18.250  -0.000 -13.989                         
    IL   180   180 2   180     3     1     1  1050  2330  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     33      - g - - -
    ML   181   180 2   183     5     1     2  1049  2328 -17.182  -0.000 -16.998 -17.210 -18.102          0.403 -1.503  0.671 -0.448 
     D   182   180 2   183     5     0     0  1046  2325  -5.389  -0.550  -4.650  -3.025  -2.937         
    IL   183   183 3   183     5     1     1  1048  2328  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   31 ]     34    123 C G - -
    MP   184   183 3   188     6     2     2  1048  2327 -18.112 -18.051  -0.000 -16.827 -17.107 -17.502 -7.990 -12.110 -12.409 -1.689 -3.826 -13.253  3.676 -7.050 -6.336 -0.761 -12.781 -3.399  1.041 -12.592 -4.004 -7.735 
    ML   185   183 3   188     6     1     1  1045  2324  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   186   183 3   188     6     1     1  1044  2323  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   187   183 3   188     6     0     0  1037  2316  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   188   188 5   188     6     1     1  1046  2326  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   189   189 6   189     5     1     1  1046  2326  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]     35    122 C G - -
    MP   190   189 6   194     6     2     2  1046  2325 -18.112 -18.051  -0.000 -16.827 -17.107 -17.502  1.478 -12.480 -12.717  0.219 -4.250 -13.496  3.154 -12.215 -12.591 -3.066 -13.077 -6.830  1.524 -12.922 -3.426 -11.315 
    ML   191   189 6   194     6     1     1  1043  2322  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   192   189 6   194     6     1     1  1041  2321  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   193   189 6   194     6     0     0  1035  2314  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   194   194 5   194     6     1     1  1044  2324  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1  1044  2324  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     36    121 G C - -
    MP   196   195 6   200     6     2     2  1044  2323 -18.112 -18.051  -0.000 -16.827 -17.107 -17.502 -14.563 -12.879 -14.647  1.954 -14.637 -14.671 -1.164 -14.543 -13.980  3.302 -3.083 -10.462  0.764 -14.607 -12.164 -13.398 
    ML   197   195 6   200     6     1     1  1041  2320  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   198   195 6   200     6     1     1  1039  2318  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   199   195 6   200     6     0     0  1033  2312  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   200   200 5   200     6     1     1  1042  2322  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1  1042  2322  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     37    120 G C - -
    MP   202   201 6   206     6     2     2  1042  2321 -18.112 -18.051  -0.000 -16.827 -17.107 -17.502 -15.232 -7.173 -5.021 -0.719 -16.597 -11.230 -0.962 -16.228 -13.896  3.878 -14.112 -2.866 -11.601 -11.271 -13.528 -14.846 
    ML   203   201 6   206     6     1     1  1039  2318  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   204   201 6   206     6     1     1  1036  2315  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   205   201 6   206     6     0     0  1031  2311  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   206   206 5   206     6     1     1  1040  2320  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1  1040  2320  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     38    119 A U - -
    MP   208   207 6   212     4     2     2  1040  2319 -17.340 -17.547  -0.000 -15.962                 -12.768 -1.952 -12.652  3.550 -13.764 -13.444 -1.309 -13.188 -12.908  0.923 -13.251 -2.079  0.236 -12.656 -3.888 -2.031 
    ML   209   207 6   212     4     1     1  1037  2317  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   210   207 6   212     4     1     1  1032  2311  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   211   207 6   212     4     0     0  1030  2309  -4.568  -4.250  -2.265  -0.520                 
    IL   212   212 5   212     4     1     1  1039  2318  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     3     1     1  1038  2318  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   36 ]     39      - U - - -
    ML   214   213 6   216     3     1     1  1038  2317 -18.250  -0.000 -16.904                         -4.577 -0.749 -6.354  1.745 
     D   215   213 6   216     3     0     0  1026  2305  -6.174  -1.687  -0.566                         
    IL   216   216 3   216     3     1     1  1037  2316  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     40      - U - - -
    ML   217   216 3   219     3     1     1  1037  2316 -18.250  -0.000 -16.904                         -15.388 -5.751 -16.847  1.993 
     D   218   216 3   219     3     0     0  1019  2299  -6.174  -1.687  -0.566                         
    IL   219   219 3   219     3     1     1  1036  2315  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     41      - g - - -
    ML   220   219 3   222     3     1     1  1036  2315 -18.250  -0.000 -16.904                         -0.444 -0.446  0.485  0.178 
     D   221   219 3   222     3     0     0  1010  2289  -6.174  -1.687  -0.566                         
    IL   222   222 3   222     3     1     1  1034  2313  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     42      - u - - -
    ML   223   222 3   225     3     1     1  1035  2314 -18.250  -0.000 -16.904                         -0.444 -0.446  0.176  0.486 
     D   224   222 3   225     3     0     0   994  2273  -6.174  -1.687  -0.566                         
    IL   225   225 3   225     3     1     1  1031  2311  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     43      - g - - -
    ML   226   225 3   228     3     1     1  1034  2313 -18.250  -0.000 -16.904                         -0.445 -0.446  0.845 -0.445 
     D   227   225 3   228     3     0     0   961  2241  -6.174  -1.687  -0.566                         
    IL   228   228 3   228     3     1     1  1028  2308  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     44      - G - - -
    ML   229   228 3   231     3     1     1  1033  2312  -1.849  -0.469 -16.904                         -0.205 -4.027  1.619 -12.777 
     D   230   228 3   231     3     0     0   824  2103  -6.174  -1.687  -0.566                         
    IL   231   231 3   231     3     1     1  1121  2400  -0.021  -6.128 -19.923                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    118      - u - - -
    ML   232   231 3   234     2     1     1     1     1       *   0.000                                 -0.196 -0.331  0.140  0.299 
     D   233   231 3   234     2     0     0     0     0       *   0.000                                 
    IL   234   234 3   234     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    43 ]      -      - - - - -
     E   235   234 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-His
ACC   bact-His-r2-022416
LENG  74
MAXL  1082
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 16:09:14 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-His-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-His-r2-022416.sto
NSEQ  4731
EFFN  14.839419
CKSUM 3642553722
STATS LOCAL MSV       -8.2696  0.71884
STATS LOCAL VITERBI   -9.0796  0.71884
STATS LOCAL FORWARD   -3.4873  0.71884
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62087  1.40117  1.20298  1.36389
          1.38629  1.38629  1.38629  1.38629
          0.01331  5.01867  5.01867  1.46634  0.26236  0.00000        *
      1   2.33051  2.59180  0.29500  2.48486      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01331  5.01867  5.01867  1.46634  0.26236  1.09861  0.40547
      2   2.46671  1.08351  1.99836  0.81832      2 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.01328  5.02157  5.02157  1.46634  0.26236  1.09861  0.40547
      3   2.74750  3.05618  0.15861  3.33769      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01328  5.02157  5.02157  1.46634  0.26236  1.09861  0.40547
      4   1.78595  2.51449  0.41910  2.36635      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01314  5.03202  5.03202  1.46634  0.26236  1.09861  0.40547
      5   2.08018  1.10954  1.18083  1.43398      5 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.01314  5.03207  5.03207  1.46634  0.26236  1.09861  0.40547
      6   2.45869  1.48569  2.27194  0.53615      6 U - - (
          1.38629  1.38629  1.38629  1.38629
          0.07283  2.75299  5.03541  0.56847  0.83561  1.09861  0.40547
      7   1.86366  3.10815  0.33620  2.45657      9 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01676  5.03541  4.59380  1.46634  0.26236  1.09861  0.40547
      8   3.21470  3.26317  3.75975  0.10728     10 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01314  5.03198  5.03198  1.46634  0.26236  0.82681  0.57526
      9   0.38681  3.52867  1.36981  3.28926     11 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01568  5.03560  4.70468  1.46634  0.26236  1.09861  0.40547
     10   2.42284  3.26376  0.18008  3.27322     12 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02366  5.03305  4.08269  1.46634  0.26236  0.89057  0.52834
     11   3.48436  0.37362  3.11077  1.44171     13 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01323  5.02523  5.02523  1.46634  0.26236  1.52314  0.24593
     12   3.06551  1.90436  1.45564  0.56001     14 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01323  5.02523  5.02523  1.46634  0.26236  1.52314  0.24593
     13   1.63216  0.67944  2.08090  1.75578     15 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01323  5.02523  5.02523  1.46634  0.26236  0.57279  0.83000
     14   0.03891  4.74043  4.40587  4.06131     16 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     15   1.63090  3.38308  0.30891  3.32262     17 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     16   1.89815  2.15889  2.68928  0.40531     18 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.44135  5.03559  1.04888  1.46634  0.26236  1.09861  0.40547
     17   2.80396  2.35032  2.96152  0.23275     19 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.04534  3.36905  4.61426  0.50119  0.93092  0.03710  3.31257
     18   3.01748  4.96305  0.07117  4.35962     21 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03537  5.03537  1.46634  0.26236  1.07569  0.41713
     19   4.72977  5.85482  0.01714  5.24076     22 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     20   3.16507  1.09884  3.93430  0.50257     23 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.56770  3.55940  0.90457  0.56342  0.84225  1.09861  0.40547
     21   1.74990  2.11322  2.49011  0.47408     26 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02185  4.52774  4.52774  1.46634  0.26236  0.03163  3.46951
     22   0.17999  3.74321  2.21075  3.46018     27 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02360  4.08525  5.03560  0.64954  0.73875  1.09861  0.40547
     23   1.28491  2.48973  0.62647  2.24512     29 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     24   0.60949  1.49503  1.76298  2.80348     30 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     25   1.63693  3.36100  0.36014  2.61534     31 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     26   3.44042  0.27000  3.09424  1.83720     32 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01314  5.03560  5.02859  1.46634  0.26236  1.09861  0.40547
     27   1.14284  2.11131  1.08353  1.50684     33 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03555  5.03555  1.46634  0.26236  1.09394  0.40781
     28   2.70785  0.46730  2.29972  1.57822     34 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     29   1.56179  0.75245  2.51900  1.43343     35 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     30   1.47694  2.75727  0.52196  2.16417     36 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     31   2.27903  2.87660  0.22471  3.15719     37 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     32   0.66211  2.55275  1.26834  2.07887     38 A - - <
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     33   3.28986  1.97786  3.90775  0.21779     39 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     34   4.53520  4.04752  5.07279  0.03506     40 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     35   1.48333  1.68175  1.21747  1.23411     41 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     36   1.47889  1.67368  1.39198  1.09073     42 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     37   1.50909  1.70753  0.97442  1.51337     43 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     38   1.54373  3.42476  0.32297  3.51102     44 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.28901  1.40856  5.03560  4.23334  0.01461  1.09861  0.40547
     39   1.38639  1.62466  1.41045  1.17438    118 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     40   2.32266  1.35211  2.37071  0.59805    119 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     41   3.42560  0.25960  2.73026  2.03327    120 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     42   2.28588  0.57311  2.55583  1.35899    121 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     43   1.14703  2.69301  0.70254  2.12513    122 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     44   1.70581  2.47899  0.43336  2.45084    123 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     45   1.18405  1.74304  2.01480  0.95288    124 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03564  5.03560  3.55741  1.46634  0.26236  1.09861  0.40547
     46   1.41819  2.25120  1.18282  1.06085    125 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.10647  2.40419  4.54142  2.16617  0.12173  0.37576  1.16080
     47   2.60472  2.82005  0.33806  1.87522    144 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09983  5.03167  2.42498  1.46634  0.26236  0.80986  0.58864
     48   2.42088  2.80108  2.34345  0.28181    145 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01795  4.95045  4.53656  1.46634  0.26236  0.13764  2.05118
     49   2.77887  0.30978  3.56808  1.73684    146 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01434  5.03226  4.86446  1.46634  0.26236  1.25638  0.33503
     50   2.59744  3.21834  0.14126  4.05980    147 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01315  5.03107  5.03107  1.46634  0.26236  1.13928  0.38574
     51   1.86807  1.10265  2.18438  0.91369    148 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.01983  4.33454  5.03226  0.80776  0.59033  1.25638  0.33503
     52   2.10307  2.57170  0.28770  2.96567    150 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01313  5.03226  5.03226  1.46634  0.26236  0.84250  0.56323
     53   3.31549  3.87012  0.07203  4.39640    151 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     54   3.76196  5.12481  0.03619  5.05761    152 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04684  3.23761  5.03560  0.81019  0.58838  1.09861  0.40547
     55   3.86890  3.97063  4.64529  0.05061    156 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.04684  5.03560  3.23761  1.46634  0.26236  1.09861  0.40547
     56   3.85672  3.73221  4.05334  0.06448    157 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01354  5.00230  5.00230  1.46634  0.26236  2.08412  0.13286
     57   5.10363  0.02197  5.44128  4.48133    158 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01354  5.00230  5.00230  1.46634  0.26236  2.08412  0.13286
     58   1.54793  4.23784  0.28335  3.93137    159 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01354  5.00230  5.00230  1.46634  0.26236  0.28613  1.39097
     59   0.05021  4.48836  3.71828  4.30851    160 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     60   1.57194  2.93539  0.60212  1.65235    161 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03560  5.03560  1.46634  0.26236  1.09861  0.40547
     61   2.71946  1.76570  2.93983  0.34228    162 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.05034  3.23761  4.62172  0.30363  1.33992  1.09861  0.40547
     62   5.14782  0.04559  4.74273  3.50523    164 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01313  5.03226  5.03226  1.46634  0.26236  1.25638  0.33503
     63   4.52078  0.08129  3.80607  3.10197    165 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01313  5.03226  5.03226  1.46634  0.26236  0.84250  0.56323
     64   3.21022  0.34992  2.46150  1.77432    166 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01429  5.03560  4.86779  1.46634  0.26236  1.09861  0.40547
     65   0.99019  2.29433  1.02539  1.77782    167 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.01311  5.03441  5.03441  1.46634  0.26236  0.98993  0.46458
     66   4.11244  1.89387  3.11899  0.23706    168 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.01695  5.03560  4.57506  1.46634  0.26236  1.09861  0.40547
     67   2.61045  0.37953  2.92589  1.66761    169 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03099  3.73026  5.03179  0.47667  0.96982  0.83514  0.56883
     68   0.62126  2.37558  1.35640  2.18762    171 A - - )
          1.38629  1.38629  1.38629  1.38629
          0.01309  5.03541  5.03541  1.46634  0.26236  1.10848  0.40057
     69   1.84048  1.75913  0.96289  1.24732    172 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01648  5.03541  4.62152  1.46634  0.26236  1.10848  0.40057
     70   2.79585  0.58646  2.39320  1.23338    173 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01314  5.03207  5.03207  1.46634  0.26236  0.85093  0.55690
     71   3.44550  0.18404  2.95756  2.47380    174 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01318  5.02887  5.02887  1.46634  0.26236  1.07917  0.41533
     72   0.74223  2.09580  1.20612  2.28653    175 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.01318  5.02907  5.02907  1.46634  0.26236  1.09861  0.40547
     73   2.99420  0.36571  2.22510  1.90946    176 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02705  3.90470  5.02907  0.88596  0.53157  1.09861  0.40547
     74   1.71456  0.44128  2.78517  2.16261    179 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.75494  0.63495        *  1.10293  0.40331  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Ile2
ACC      bact-Ile2-r2-022416
STATES   245
NODES    66
CLEN     77
W        317
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 16:54:01 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile2-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile2-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile2-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     4753
EFFN     4753.000000
CKSUM    443421426
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -7.9959 0.71918
ECMLC    0.52795   -10.01674     1.91820     1600000      654153  0.001834
ECMGC    0.43653   -18.26767    -6.74136     1600000       61272  0.006528
ECMLI    0.53596    -9.12008     2.48394     1600000      602818  0.001991
ECMGI    0.42907   -16.52241    -5.00642     1600000       55973  0.007146
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1   317   623 -17.141 -18.386  -0.974  -1.027                 
    IL     1     1 2     1     4     7    22   319   624  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3     8    24   319   625  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    174 - A - -
    MR     3     2 3     5     3    11    26   318   624 -17.576  -0.000 -15.893                          2.000 -13.208 -12.465 -12.540 
     D     4     2 3     5     3     6    19   314   620 -18.617 -13.795  -0.000                         
    IR     5     5 3     5     3     8    24   318   624  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    173 - C - -
    MR     6     5 3     8     3    10    25   317   623  -6.221  -0.019 -15.893                         -14.123  2.000 -15.176 -12.339 
     D     7     5 3     8     3     6    19   314   620 -18.617 -13.795  -0.000                         
    IR     8     8 3     8     3     9    25   317   623  -6.686  -0.017  -8.925                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    171 - C - -
    MR     9     8 3    11     3     9    24   316   622  -6.281  -0.019 -13.085                         -14.123  2.000 -15.176 -12.339 
     D    10     8 3    11     3     6    19   314   620 -18.617  -0.283  -2.487                         
    IR    11    11 3    11     3     8    23   316   622  -6.628  -0.018  -8.866                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    169 - A - -
    MR    12    11 3    14     5    10    23   315   621 -17.057  -0.040 -11.736  -5.218 -17.976          1.795 -2.631 -1.571 -4.924 
     D    13    11 3    14     5     6    17   311   617 -14.259  -9.614  -0.206 -13.316  -2.925         
    IR    14    14 3    14     5     7    20   315   621  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      2    168 G C - -
    MP    15    14 3    19     6    10    22   314   620 -17.947 -17.886  -0.058  -8.286  -4.798 -17.337 -3.487 -10.562 -11.736 -2.307 -3.580 -12.333 -0.039 -12.412 -6.194  3.577 -4.131  0.808 -0.223 -11.593 -4.899 -10.698 
    ML    16    14 3    19     6     8    18   312   618 -15.282  -1.318 -10.343  -0.742 -15.478 -13.008  0.683 -9.497 -10.881  1.259 
    MR    17    14 3    19     6     8    20   313   618 -14.186 -12.915  -0.571 -12.893  -1.617 -11.107 -3.574  1.904 -3.559 -3.498 
     D    18    14 3    19     6     5    14   308   614 -15.714 -14.413 -10.210 -10.892 -10.909  -0.003 
    IL    19    19 5    19     6     7    19   313   619  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5     8    22   314   620  -1.005  -0.997 -13.483 -11.651 -12.757          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      3    165 G C - -
    MP    21    20 6    25     6    10    20   312   618 -17.967 -17.906  -0.012  -7.509  -8.361 -17.357 -12.152 -10.758 -11.981 -1.252 -13.074 -12.510  0.503 -12.653 -12.357  3.658 -12.604 -0.104 -3.620 -8.861 -0.936 -10.944 
    ML    22    20 6    25     6     7    16   308   614 -14.630 -14.976  -3.363  -0.156 -14.826  -7.621 -2.604 -4.750  1.826 -1.988 
    MR    23    20 6    25     6     8    18   311   617 -14.885 -13.614  -0.536 -13.592  -1.690 -11.806 -7.834  1.928 -2.445 -7.348 
     D    24    20 6    25     6     5    14   308   614 -15.714 -14.413 -10.210 -10.892  -7.691  -0.009 
    IL    25    25 5    25     6     7    18   311   617  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5     7    18   311   617  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      4    164 g c - -
    MP    27    26 6    31     6     8    18   310   616 -18.005 -17.945  -0.064 -13.241  -4.555 -10.202 -12.255 -11.129 -8.011  1.652 -12.223 -12.784  2.278 -12.379 -12.369  2.701 -12.704 -5.340  0.558 -12.074 -8.117 -10.972 
    ML    28    26 6    31     6     7    15   307   613 -14.631 -14.977  -5.966  -0.024 -14.827 -12.356 -5.049 -4.412  1.830 -1.448 
    MR    29    26 6    31     6     7    16   309   615 -13.494 -12.223  -0.207 -12.201  -2.915 -10.414 -7.349  1.988 -7.747 -5.433 
     D    30    26 6    31     6     5    14   308   614 -15.737 -14.436  -0.081 -10.915 -10.932  -4.216 
    IL    31    31 5    31     6     6    15   309   615  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5     6    15   309   615  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      5    163 C G - -
    MP    33    32 6    37     6     9    19   308   614 -17.982 -17.921  -0.001 -16.697 -10.067 -17.372 -12.268 -11.898 -8.334 -0.087 -11.185 -6.252  3.155 -11.820 -12.142  2.160 -9.591 -2.652  0.401 -12.423 -2.444 -10.854 
    ML    34    32 6    37     6     6    14   306   612  -1.955 -14.958  -8.363  -0.632 -14.808  -3.419  0.057 -6.622  1.559 -8.008 
    MR    35    32 6    37     6     5    13   305   611 -14.936 -13.665  -1.192 -13.643  -3.579  -1.064  1.085  0.774 -2.651 -6.713 
     D    36    32 6    37     6     4    11   303   609 -12.700 -11.398  -7.195  -7.877  -7.895  -0.023 
    IL    37    37 5    37     6     7    18   307   613  -8.571  -8.834  -0.009 -10.489 -11.265 -10.926  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5     6    15   307   613  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      7    162 C G - -
    MP    39    38 6    43     6     9    17   306   612  -6.249  -7.236  -0.029 -16.744 -17.024 -17.419 -12.424 -12.131 -12.413 -0.427 -7.564 -6.641  3.483 -11.927 -12.276  1.381 -12.782 -6.910 -0.111 -12.602 -0.935 -10.996 
    ML    40    38 6    43     6     7    14   304   610 -13.984 -14.330  -9.044  -0.003 -14.179 -11.709 -7.819 -9.592  1.997 -8.580 
    MR    41    38 6    43     6     6    13   304   609 -11.694 -10.423  -1.096 -10.401  -0.922  -8.615 -4.036 -5.156  1.816 -1.361 
     D    42    38 6    43     6     4    11   303   608 -16.861 -15.559 -11.356  -0.376  -2.521  -4.184 
    IL    43    43 5    43     6     7    16   306   612  -1.008  -9.820  -0.998 -11.475 -12.251 -11.912  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5     6    15   305   611  -6.739  -0.021 -10.251  -8.418  -9.524          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]     10    160 g c - -
    MP    45    44 6    49     6     8    15   304   610  -5.795 -17.970  -0.027 -12.159 -17.027 -17.422 -12.326 -12.015 -12.325 -0.728 -4.527 -13.166  1.151 -11.850 -12.187  2.279 -12.699 -2.183  2.265 -9.254  1.658 -3.452 
    ML    46    44 6    49     6     6    13   303   609 -14.696 -15.042  -1.355  -0.716 -14.892 -12.421  0.642  1.285 -10.554 -8.698 
    MR    47    44 6    49     6     5    11   301   607 -12.342 -11.071  -4.120 -11.049  -0.090  -9.262 -4.292 -4.136 -2.306  1.884 
     D    48    44 6    49     6     3     9   299   605 -12.700 -11.398  -7.195  -7.877  -7.895  -0.023 
    IL    49    49 5    49     6     7    14   303   609  -9.019  -9.282  -0.007 -10.937 -11.713 -11.374  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5     5    12   303   609  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     12    159 g c - -
    MP    51    50 6    55     4     6    13   302   608  -4.136  -7.217  -0.119  -6.013                 -7.783 -11.042 -12.019  1.682 -7.160 -12.681 -0.569 -12.267 -12.266  2.701 -12.606 -2.312  2.205 -11.960 -0.340 -10.862 
    ML    52    50 6    55     4     5    12   302   608  -0.018 -11.261  -6.545  -9.990                 -7.829 -5.297  1.988 -8.564 
    MR    53    50 6    55     4     4    10   300   606 -10.289  -9.318  -1.757  -0.511                 -6.634 -6.017 -7.543  1.989 
     D    54    50 6    55     4     3     9   299   605  -8.130  -7.811  -1.600  -0.595                 
    IL    55    55 5    55     4     4    11   301   607  -1.092 -12.267  -1.633  -2.263                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3     6    12   301   607  -5.749  -0.031  -8.449                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     16      - U - - -
    ML    57    56 6    59     3     5    11   300   606  -4.868  -0.050 -16.831                         -5.243 -3.942 -3.715  1.938 
     D    58    56 6    59     3     3     9   298   604 -15.462  -1.856  -0.466                         
    IL    59    59 3    59     3     4    11   304   609  -0.324  -9.682  -2.324                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     22      - A - - -
    ML    60    59 3    62     2     4    10   299   605 -18.806  -0.000                                  1.715 -2.783 -1.083 -3.315 
     D    61    59 3    62     2     3     9   298   604 -14.115  -0.000                                 
    IL    62    62 3    62     2     4    10   299   605  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64     3     9   298   604                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     0     2   265   571 -18.256  -0.000 -16.910                         
    IL    65    65 2    65     3     1     1   266   572  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]     98      - u - - -
    ML    66    65 2    68     3     1     3   265   571 -18.256  -0.000 -16.910                         -0.325  0.304 -2.037  0.785 
     D    67    65 2    68     3     0     0   247   553  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     1   264   570  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]     99      - G - - -
    ML    69    68 3    71     3     1     2   264   570  -2.093  -0.385 -16.910                         -1.243 -1.741  1.540 -1.435 
     D    70    68 3    71     3     0     0   216   522  -6.174  -1.687  -0.566                         
    IL    71    71 3    71     3     1     2   287   593  -0.087  -4.097 -17.655                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    129      - G - - -
    ML    72    71 3    74     3     1     1    60   123  -6.557  -0.135  -3.662                         -0.764 -3.371  1.416 -0.632 
     D    73    71 3    74     3     0     0    58   122  -6.174  -1.687  -0.566                         
    IL    74    74 3    74     3     1     1    60   124  -6.437  -0.019  -9.138                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    131      - U - - -
    ML    75    74 3    77     3     1     2    59   122 -18.138  -0.000 -16.792                         -0.708 -1.377 -2.361  1.490 
     D    76    74 3    77     3     0     0    58   122 -16.014  -1.885  -0.456                         
    IL    77    77 3    77     3     1     1    60   123  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    132      - C - - -
    ML    78    77 3    80     5     1     2    58   121 -17.104  -0.021 -16.919  -6.144 -18.023         -2.748  1.343 -0.531 -0.685 
     D    79    77 3    80     5     0     0    58   122 -13.517  -9.361 -12.778  -0.314  -2.367         
    IL    80    80 3    80     5     1     1    58   122  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    133    157 G C - -
    MP    81    80 3    85     6     2     2    57   120 -18.012 -17.952  -0.000 -16.728 -17.008 -17.403 -11.979 -8.247 -11.797  0.093 -12.925 -12.393  1.703 -0.912 -3.484  3.392 -8.860 -1.261 -3.909 -11.652 -3.930 -10.763 
    ML    82    80 3    85     6     1     1    58   122  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    59   122 -15.466 -14.195 -10.104 -14.173  -2.237  -0.346 -7.239 -5.463 -4.311  1.971 
     D    84    80 3    85     6     0     0    57   120 -15.669 -14.368 -10.165 -10.847 -10.864  -0.003 
    IL    85    85 5    85     6     1     1    57   121  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    57   121  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    134    156 C G - -
    MP    87    86 6    91     6     2     2    55   118 -18.012 -17.952  -0.004  -8.436 -17.008 -17.403 -0.911 -2.353 -8.832  0.692 -11.122 -8.878  3.230 -7.564 -12.051 -2.074 -12.570 -0.923  1.695 -5.575 -2.298 -4.897 
    ML    88    86 6    91     6     1     1    58   122  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     1    60   124 -13.238 -11.967  -7.876 -11.945  -0.008 -10.159 -3.483 -5.425 -6.366  1.954 
     D    90    86 6    91     6     0     0    56   120 -18.042 -16.740 -12.537 -13.219 -13.237  -0.001 
    IL    91    91 5    91     6     1     1    56   120  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    56   119  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    135    155 g c - -
    MP    93    92 6    97     6     2     2    53   116 -18.008 -17.947  -0.007 -16.724 -17.004  -7.757 -11.996 -9.015 -3.755  2.128 -5.670 -0.908  0.287 -12.415 -12.223  2.552 -12.490 -2.507  1.864 -8.380 -3.365 -10.766 
    ML    94    92 6    97     6     1     1    59   123 -10.524 -10.870  -4.355  -0.080 -10.720  -8.249  1.922 -4.728 -2.933 -4.547 
    MR    95    92 6    97     6     1     1    59   123 -13.238 -11.967  -7.876 -11.945  -0.008 -10.159 -6.479 -3.854  1.968 -7.184 
     D    96    92 6    97     6     0     0    56   120 -18.042 -16.740 -12.537 -13.219 -13.237  -0.001 
    IL    97    97 5    97     6     1     1    55   118  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    54   118  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    136    154 G C - -
    MP    99    98 6   103     6     2     2    51   114 -18.002 -17.941  -0.092  -5.145  -4.900 -17.392 -13.685 -9.134 -13.716  0.387 -14.869 -13.550 -4.014 -14.243 -4.508  3.720 -13.620 -0.771 -0.278 -13.252 -11.926 -12.622 
    ML   100    98 6   103     6     1     1    58   122 -10.483 -10.829  -5.543  -0.039 -10.679  -8.208 -4.575 -6.159  1.970 -5.309 
    MR   101    98 6   103     6     1     1    58   122 -13.238 -11.967  -5.475 -11.945  -0.035 -10.159 -3.713 -8.238  1.969 -7.280 
     D   102    98 6   103     6     0     0    56   120 -18.144 -16.842 -12.639 -13.321 -13.339  -0.001 
    IL   103   103 5   103     6     1     1    52   116  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    52   115  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    137    153 G C - -
    MP   105   104 6   109     4     2     2    44   108 -17.139 -17.346  -0.021  -6.127                 -15.326 -3.675 -16.392 -9.725 -17.208 -13.861 -11.766 -16.267 -13.815  3.984 -14.079 -3.778 -12.050 -14.245 -14.097 -5.163 
    ML   106   104 6   109     4     1     1    57   121 -10.962 -11.144  -3.400  -0.145                 -6.751 -6.544 -1.484  1.857 
    MR   107   104 6   109     4     1     1    57   121 -13.029 -12.058  -9.925  -0.002                  0.181  1.517 -9.900 -8.294 
     D   108   104 6   109     4     0     0    56   120 -13.566 -13.247 -11.263  -0.001                 
    IL   109   109 5   109     4     1     1    50   114  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    50   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    138      - U - - -
    ML   111   110 6   113     3     1     1    25    88 -18.031  -0.000 -16.686                         -5.681 -6.732 -6.242  1.985 
     D   112   110 6   113     3     0     0    57   120 -16.883  -2.616  -0.257                         
    IL   113   113 3   113     3     1     1    51   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    139      - U - - -
    ML   114   113 3   116     3     1     1    23    87 -18.071  -0.000 -16.725                         -6.267 -6.905 -5.069  1.981 
     D   115   113 3   116     3     0     0    57   121 -16.627 -12.140  -0.000                         
    IL   116   116 3   116     3     1     1    51   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    140      - C - - -
    ML   117   116 3   119     3     1     1    21    85 -18.071  -0.000 -16.725                         -12.182  1.991 -6.500 -6.299 
     D   118   116 3   119     3     0     0    57   121  -2.212 -12.140  -0.351                         
    IL   119   119 3   119     3     1     1    60   124  -0.417  -1.994 -12.394                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    145      - G - - -
    ML   120   119 3   122     3     1     1    17    81 -18.113  -0.027  -5.761                          0.272 -13.019  1.471 -5.703 
     D   121   119 3   122     3     0     0    55   119  -1.616  -1.029  -2.443                         
    IL   122   122 3   122     3     1     1    59   123  -0.417  -1.995 -12.638                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    150      - A - - -
    ML   123   122 3   125     3     1     1     8    26 -18.206  -0.000 -16.860                          1.978 -4.542 -13.094 -5.891 
     D   124   122 3   125     3     0     0     9    27 -14.803  -0.231  -2.758                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    151      - g - - -
    ML   126   125 3   128     3     1     1     6    24 -18.249  -0.000 -16.903                          0.235 -0.712  0.811 -1.127 
     D   127   125 3   128     3     0     0     9    28 -12.053  -7.566  -0.008                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    152      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -4.677 -0.847 -3.758  1.736 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     0     3    98   198   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     0     3    98   198                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     3    36    62  -0.066  -5.792  -7.535  -5.571                 
                                             [ MATP   18 ]     23     54 G C - -
    MP   136   135 1   140     6     2     5    36    62 -18.053  -5.969  -0.164  -3.562 -17.048  -7.156 -15.589 -12.626 -16.836 -3.094 -3.157 -13.938 -11.908 -16.665 -13.963  3.915 -4.686 -1.203 -2.221 -14.346 -14.269 -15.574 
    ML   137   135 1   140     6     1     4    34    57 -13.212 -13.558  -8.272  -0.006 -13.408 -10.937  1.996 -8.592 -7.843 -7.966 
    MR   138   135 1   140     6     1     3    32    57 -12.032 -10.761  -6.670 -10.740  -0.197  -3.101 -6.179  1.982 -6.630 -5.281 
     D   139   135 1   140     6     0     1    30    54 -16.576 -15.275 -11.072 -11.754 -11.771  -0.002 
    IL   140   140 5   140     6     1     3    38    64  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     4    39    65  -1.010  -0.994 -12.485 -10.653 -11.759          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     24     51 C G - -
    MP   142   141 6   146     6     2     6    32    55 -17.914  -5.938  -0.054  -5.596 -16.910 -17.305 -14.972 -15.254 -14.289 -11.490 -3.972 -14.433  3.959 -13.555 -14.393 -4.038 -14.513 -13.658 -2.421 -14.806 -2.887 -13.194 
    ML   143   141 6   146     6     1     3    33    56 -15.658 -16.004 -10.719  -0.236 -15.854  -2.737  1.260 -0.733 -0.812 -1.207 
    MR   144   141 6   146     6     1     4    31    54 -11.857 -10.586  -0.034 -10.564  -5.698  -8.778 -3.829 -3.681 -2.219  1.863 
     D   145   141 6   146     6     0     1    30    54 -17.006 -15.704 -11.501  -2.086  -5.473  -0.431 
    IL   146   146 5   146     6     1     3    32    55  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     4    31    54  -7.884  -0.009 -11.395  -9.563 -10.669          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     25     49 U A - -
    MP   148   147 6   152     6     2     5    30    53 -17.892  -4.891  -0.064  -6.783 -11.772 -17.283 -14.368 -14.396 -13.915 -1.162 -3.610 -14.226  0.854 -13.248 -13.944 -1.045 -14.179 -12.331  3.696 -3.574 -2.930 -12.719 
    ML   149   147 6   152     6     1     3    32    55 -15.794 -16.140 -10.855  -0.093 -15.990  -4.021 -0.612 -11.008  1.742 -10.202 
    MR   150   147 6   152     6     1     3    29    52  -9.245  -7.974  -0.220  -7.952  -3.086  -6.166 -2.633  1.797 -3.457 -1.875 
     D   151   147 6   152     6     0     1    29    53 -17.344 -16.043 -11.840 -12.522  -0.775  -1.268 
    IL   152   152 5   152     6     1     3    30    53  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     4    29    53  -2.176  -0.362 -12.761 -10.929 -12.035          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     26     46 C G - -
    MP   154   153 6   158     4     2     4    28    51 -17.108  -5.445  -0.091  -4.708                  0.593 -15.205 -9.182 -11.436 -2.617 -5.636  3.566 -13.516  0.087 -1.900 -14.474 -13.597  0.097 -14.764 -4.076 -13.153 
    ML   155   153 6   158     4     1     4    31    54  -3.397  -1.353  -0.962 -11.804                 -0.975  0.813  0.094 -0.586 
    MR   156   153 6   158     4     1     2    23    46 -12.008 -11.037  -6.245  -0.020                 -7.308 -9.081  1.996 -8.070 
     D   157   153 6   158     4     0     1    30    54  -1.693 -11.716  -9.732  -0.537                 
    IL   158   158 5   158     4     1     4    32    55  -1.403  -2.042  -1.400 -12.212                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     4    30    54  -1.134  -0.878 -12.679                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     29      - A - - -
    ML   160   159 6   162     3     1     3    24    43 -18.154  -0.028  -5.696                          1.870 -13.920 -14.069 -1.542 
     D   161   159 6   162     3     0     1    20    39 -15.805 -11.318  -0.001                         
    IL   162   162 3   162     3     1     2    26    45  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     30      - G - - -
    ML   163   162 3   165     3     1     3    23    42 -18.126  -0.000 -16.780                         -0.786 -3.043  1.637 -2.401 
     D   164   162 3   165     3     0     1    20    39 -16.141  -2.536  -0.273                         
    IL   165   165 3   165     3     1     2    25    44  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     31      - U - - -
    ML   166   165 3   168     3     1     2    22    41 -18.149  -0.773  -1.270                         -2.415  0.249 -2.572  1.296 
     D   167   165 3   168     3     0     1    14    33 -15.869 -11.382  -0.001                         
    IL   168   168 3   168     3     1     2    24    44  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     32      - U - - -
    ML   169   168 3   171     3     1     2    21    40  -2.684  -0.244 -12.009                         -3.865  0.284 -5.080  1.424 
     D   170   168 3   171     3     0     1    10    29 -18.544  -0.000 -12.936                         
    IL   171   171 3   171     3     1     1    22    41  -1.388  -0.831  -4.166                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     36      - G - - -
    ML   172   171 3   174     3     1     2    10    28  -7.298  -0.009 -16.899                         -5.547 -2.938  1.944 -12.887 
     D   173   171 3   174     3     0     0    11    29 -12.679  -0.034  -5.428                         
    IL   174   174 3   174     3     1     1    10    29  -5.716  -0.032  -8.416                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     38      - G - - -
    ML   175   174 3   177     3     1     1     9    27 -18.256  -0.010  -7.208                         -6.269 -14.554  1.995 -13.527 
     D   176   174 3   177     3     0     0    14    33  -7.458  -2.971  -0.206                         
    IL   177   177 3   177     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     39      - U - - -
    ML   178   177 3   180     3     1     1     7    26  -4.974  -0.303  -2.664                         -1.964 -1.558 -3.666  1.733 
     D   179   177 3   180     3     0     0     6    24 -12.509  -8.022  -0.006                         
    IL   180   180 3   180     3     1     1     7    26  -7.981  -0.007 -10.681                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     41      - U - - -
    ML   181   180 3   183     3     1     1     6    25 -17.999  -0.000 -16.653                         -2.324 -0.923 -1.198  1.504 
     D   182   180 3   183     3     0     0     6    24 -17.063  -0.001 -11.455                         
    IL   183   183 3   183     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     42      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.722 -6.784 -1.175 -2.008 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     0    81   181 -18.256  -0.209  -2.893                         
    IL   189   189 2   189     3     1     1    83   183  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     55      - A - - -
    ML   190   189 2   192     5     1     1    82   182 -16.981  -0.000 -16.796 -17.008 -17.900          1.403 -1.235 -1.107 -1.098 
     D   191   189 2   192     5     0     0    59   157 -14.740 -10.584 -14.001  -1.316  -0.743         
    IL   192   192 3   192     5     1     1    82   182  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     56     97 g u - -
    MP   193   192 3   197     6     2     2    81   181 -17.910 -17.849  -0.000 -13.990 -16.905 -17.300 -5.463 -1.642 -4.805  1.218 -0.920 -10.158  0.617  0.696 -1.859  1.636 -6.978  2.244 -0.591 -0.425 -4.566 -4.987 
    ML   194   192 3   197     6     1     1    78   179  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   195   192 3   197     6     1     1    62   161 -15.323 -14.052  -9.961 -14.031  -0.002 -12.244 -11.161 -9.884 -12.601  1.999 
     D   196   192 3   197     6     0     0    52   138 -18.508 -17.206 -13.003 -13.685 -13.703  -0.000 
    IL   197   197 5   197     6     1     1    80   180  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     1    80   180  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     57     96 C G - -
    MP   199   198 6   203     6     2     2    79   179 -17.910 -17.849  -0.000 -16.626 -16.905 -17.300 -12.213 -8.152 -12.206  1.119 -11.119 -13.042  3.032 -11.757 -12.082  1.675 -12.588 -1.749  1.065 -12.377 -4.093 -10.797 
    ML   200   198 6   203     6     1     1    77   177  -6.635  -6.981  -0.881  -1.390  -6.831  -4.361  0.095 -0.783  0.593 -0.247 
    MR   201   198 6   203     6     1     1    61   160 -15.323 -14.052  -8.466 -14.031  -0.715  -1.367  1.939 -2.622 -8.944 -8.714 
     D   202   198 6   203     6     0     0    52   136 -18.508 -17.206 -13.003 -13.685 -13.703  -0.000 
    IL   203   203 5   203     6     1     1    78   178  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     1    78   178  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     58     95 c g - -
    MP   205   204 6   209     6     2     2    77   177 -17.910 -17.849  -0.000 -16.626 -16.906 -17.301 -6.147 -11.877 -7.655  0.593 -4.400 -13.037  2.736 -11.732 -12.065  2.596 -4.298 -7.518 -0.356 -12.374 -0.308 -3.842 
    ML   206   204 6   209     6     1     1    74   174  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   207   204 6   209     6     1     1    62   161 -14.612 -13.341  -9.250 -13.319  -0.003 -11.533  1.894 -8.408 -1.853 -8.178 
     D   208   204 6   209     6     0     0    52   134 -18.842 -17.540 -13.337 -14.019 -14.037  -0.000 
    IL   209   209 5   209     6     1     1    76   176  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1    76   176  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     59     94 G C - -
    MP   211   210 6   215     6     2     2    75   175 -17.910 -17.849  -0.004  -8.600 -16.906 -17.301 -11.879 -10.141 -11.698  0.593 -12.828 -1.826 -0.279 -3.659 -12.135  3.715 -12.381 -3.404 -4.288 -10.865 -5.213 -10.663 
    ML   212   210 6   215     6     1     1    70   170  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   213   210 6   215     6     1     1    61   160 -14.612 -13.341  -3.803 -13.319  -0.108 -11.533 -9.194  1.998 -9.754 -8.036 
     D   214   210 6   215     6     0     0    52   132 -18.842 -17.540 -13.337 -14.019 -14.037  -0.000 
    IL   215   215 5   215     6     1     1    74   174  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     1    74   174  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]     60     93 A U - -
    MP   217   216 6   221     4     2     2    73   173  -4.218 -17.346  -0.110  -5.656                 -12.423 -1.458 -12.289  3.261 -13.504 -13.030 -1.909 -3.100 -12.597  2.359 -12.914 -4.837 -1.145 -12.251 -10.590 -4.304 
    ML   218   216 6   221     4     1     1    59   158  -7.385  -7.568  -4.134  -0.102                  1.968 -5.398 -4.831 -5.086 
    MR   219   216 6   221     4     1     1    53   139 -12.532 -11.561  -9.429  -0.003                 -10.129 -8.971 -11.437  1.999 
     D   220   216 6   221     4     0     0    52   131 -14.264 -13.945 -11.961  -0.001                 
    IL   221   221 5   221     4     1     1    72   172  -0.628  -1.504 -10.725 -14.462                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     1    69   169  -0.863  -2.507  -1.866                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     65      - C - - -
    ML   223   222 6   225     3     1     1    71   171  -5.427  -0.034 -16.624                         -14.919  2.000 -16.066 -13.058 
     D   224   222 6   225     3     0     0    52   126 -17.202 -12.715  -0.000                         
    IL   225   225 3   225     3     1     1    91   191  -0.265  -9.181  -2.588                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     72      - U - - -
    ML   226   225 3   228     3     1     1    50   115  -4.253  -0.113  -5.467                         -15.245 -13.851 -16.843  2.000 
     D   227   225 3   228     3     0     0    52   116 -17.347 -12.860  -0.000                         
    IL   228   228 3   228     3     1     1    59   124  -0.482  -9.555  -1.822                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     78      - u - - -
    ML   229   228 3   231     3     1     1    20    85 -17.823  -0.000 -16.478                          0.001 -0.001 -0.001  0.001 
     D   230   228 3   231     3     0     0    52   116 -17.728 -13.241  -0.000                         
    IL   231   231 3   231     3     1     1    45   110  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     79      - u - - -
    ML   232   231 3   234     3     1     1    19    83 -17.823  -0.000 -16.478                          0.001 -0.001 -0.001  0.001 
     D   233   231 3   234     3     0     0    52   116 -17.728 -13.241  -0.000                         
    IL   234   234 3   234     3     1     1    45   110  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     80      - u - - -
    ML   235   234 3   237     3     1     1    17    81 -17.823  -0.000 -16.478                          0.001 -0.001 -0.001  0.001 
     D   236   234 3   237     3     0     0    52   116  -2.791  -3.889  -0.344                         
    IL   237   237 3   237     3     1     1    59   123  -0.413  -2.008 -12.927                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     86      - A - - -
    ML   238   237 3   240     3     1     1     8    34 -17.927  -0.000 -16.581                          1.968 -13.731 -3.513 -13.145 
     D   239   237 3   240     3     0     0    20    46  -4.515 -12.897  -0.065                         
    IL   240   240 3   240     3     1     1    25    51  -1.007  -0.996  -9.871                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     89      - A - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                  2.000 -13.865 -13.128 -13.196 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Ile2
ACC   bact-Ile2-r2-022416
LENG  77
MAXL  319
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 16:54:01 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile2-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile2-r2-022416.sto
NSEQ  4753
EFFN  16.295467
CKSUM 443421426
STATS LOCAL MSV       -8.5438  0.71918
STATS LOCAL VITERBI   -9.4426  0.71918
STATS LOCAL FORWARD   -3.1498  0.71918
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51353  1.30888  1.26466  1.48100
          1.38629  1.38629  1.38629  1.38629
          0.25618  1.67504  3.25192  0.37189  1.16935  0.00000        *
      1   2.15039  2.41121  0.37358  2.24820      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04003  5.34009  3.36851  1.46634  0.26236  1.09861  0.40547
      2   2.21006  2.33274  0.33620  2.54090      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01261  5.32571  4.87118  1.46634  0.26236  0.57590  0.82598
      3   1.65315  1.34671  0.90338  1.94307      4 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.04759  5.34861  3.17673  1.46634  0.26236  0.45517  1.00605
      4   2.28795  0.79477  1.31873  1.71834      5 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02654  4.11087  4.62563  0.51115  0.91581  0.87864  0.53674
      5   2.47726  0.58066  1.71013  1.73924      7 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.02117  4.12402  5.34580  0.90330  0.51958  0.46938  0.98187
      6   2.36447  1.53159  1.30816  0.86871     10 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.02501  3.91087  5.36575  0.41537  1.07908  1.35458  0.29848
      7   1.62382  2.25757  0.86491  1.28315     12 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.10557  2.50017  4.01094  0.46432  0.99038  1.37460  0.29161
      8   3.47475  3.21424  3.53600  0.10568     16 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.07240  3.37074  3.33876  1.39354  0.28528  0.57840  0.82279
      9   0.25817  2.88578  2.14389  2.90912     22 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02988  5.33735  3.70384  1.46634  0.26236  0.33355  1.26011
     10   2.55333  3.27658  0.17784  3.05033     23 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01580  5.34898  4.51707  1.46634  0.26236  2.09339  0.13155
     11   3.41807  0.09995  3.98115  3.13081     24 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02360  5.34279  3.98767  1.46634  0.26236  1.07377  0.41812
     12   2.53497  1.64616  2.08634  0.50450     25 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.00986  5.33962  5.29463  1.46634  0.26236  2.19375  0.11822
     13   2.01422  0.60078  1.98744  1.70846     26 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.05061  4.23476  3.35607  0.92994  0.50183  2.25707  0.11055
     14   0.11223  4.07415  4.17825  2.60597     29 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02745  5.30968  3.81076  1.46634  0.26236  2.78624  0.06363
     15   1.85775  2.98926  0.32756  2.61765     30 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01011  5.29235  5.29235  1.46634  0.26236  1.62534  0.21921
     16   2.39351  1.26864  2.77424  0.57078     31 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.47736  5.30671  0.98184  1.46634  0.26236  2.82255  0.06130
     17   2.59167  1.30541  3.19280  0.48941     32 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.15627  1.99056  4.82155  0.48684  0.95339  0.02213  3.82183
     18   3.82994  3.51054  0.06541  4.44592     36 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01506  4.57545  5.37288  0.74146  0.64706  1.10656  0.40151
     19   4.53522  5.90459  0.01864  5.29430     38 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01547  5.37288  4.53680  1.46634  0.26236  1.10656  0.40151
     20   2.54589  2.36022  3.37265  0.23206     39 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.19782  3.40418  1.92247  0.26060  1.47222  1.46586  0.26251
     21   2.28192  1.93804  2.19341  0.44256     41 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01094  5.21413  5.21413  1.46634  0.26236  0.05945  2.85224
     22   0.24509  3.59990  2.17118  2.57702     42 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.13487  3.03311  2.55094  0.56707  0.83744  1.09861  0.40547
     23   1.41101  2.50726  0.53475  2.42139     46 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.11273  3.41244  2.60844  0.45772  1.00164  2.01701  0.14278
     24   0.49549  2.52027  1.49073  2.46411     49 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.02630  3.91379  5.11775  0.46890  0.98268  1.93557  0.15588
     25   3.72926  4.88736  0.04047  4.81406     51 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.02631  3.87621  5.25146  0.87284  0.54088  0.42437  1.06184
     26   3.16303  0.21533  3.19462  2.20322     54 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.12261  5.33725  2.20201  1.46634  0.26236  0.85480  0.55403
     27   0.55482  2.05971  2.02448  1.79415     55 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01061  5.24407  5.24407  1.46634  0.26236  3.36956  0.03501
     28   1.59829  1.44680  1.05088  1.54737     56 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01061  5.24407  5.24407  1.46634  0.26236  3.36956  0.03501
     29   1.94429  0.84138  1.52385  1.57058     57 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01061  5.24407  5.24407  1.46634  0.26236  3.35057  0.03569
     30   2.06375  1.01130  1.13181  1.67757     58 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01061  5.24417  5.24417  1.46634  0.26236  3.36890  0.03503
     31   1.91086  2.42161  0.35067  2.82931     59 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01061  5.24417  5.24417  1.46634  0.26236  2.99796  0.05118
     32   0.81944  2.76560  0.86487  2.58662     60 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.08086  2.94382  3.68823  0.85672  0.55261  3.35331  0.03559
     33   5.04006  0.02342  5.38360  4.41581     65 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.06203  3.68117  3.35372  1.59061  0.22791  3.47656  0.03140
     34   4.73457  4.43955  5.30184  0.02590     72 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.10081  2.98493  3.09330  0.97593  0.47295  3.63377  0.02677
     35   1.30181  1.48010  1.49387  1.28793     78 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.06018  5.15593  2.94430  1.46634  0.26236  3.80773  0.02245
     36   1.30181  1.48010  1.49387  1.28793     79 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01217  5.10792  5.10792  1.46634  0.26236  1.86299  0.16866
     37   1.30181  1.48010  1.49387  1.28793     80 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.05511  3.04020  5.15086  1.14213  0.38440  2.01668  0.14283
     38   0.04467  4.78546  3.65802  4.65043     86 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02121  4.17587  5.18006  0.61976  0.77235  1.83611  0.17368
     39   0.01734  5.38997  4.98565  5.15083     89 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.06443  2.90786  4.85234  0.57766  0.82373  0.95085  0.48843
     40   2.79841  0.90715  2.66768  0.76356     93 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01029  5.27511  5.27511  1.46634  0.26236  2.78133  0.06396
     41   3.06897  0.38290  2.43631  1.69192     94 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01026  5.27731  5.27731  1.46634  0.26236  3.12074  0.04513
     42   1.95353  1.20254  0.89204  1.91067     95 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01031  5.27731  5.26870  1.46634  0.26236  1.49709  0.25332
     43   1.62980  1.66228  0.81147  1.77125     96 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01006  5.29785  5.29785  1.46634  0.26236  2.91456  0.05575
     44   1.73084  1.51445  1.57275  0.92770     97 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01005  5.29789  5.29789  1.46634  0.26236  0.11381  2.22956
     45   1.48888  1.26220  2.34097  0.92860     98 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00932  5.37299  5.37299  1.46634  0.26236  1.09861  0.40547
     46   2.02659  2.48611  0.39130  2.21817     99 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.24831  1.53598  5.37299  2.83053  0.06079  1.09861  0.40547
     47   1.80027  2.95584  0.47562  1.82502    129 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09403  4.25622  2.58266  0.56150  0.84479  1.09861  0.40547
     48   1.74771  2.11644  2.56716  0.46423    131 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01004  5.29942  5.29942  1.46634  0.26236  1.26926  0.32995
     49   2.42353  0.58284  1.87549  1.61043    132 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02266  5.31988  4.04464  1.46634  0.26236  2.64952  0.07331
     50   2.05104  1.67823  0.47832  2.73535    133 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00996  5.30718  5.30718  1.46634  0.26236  2.81701  0.06165
     51   1.81223  0.79332  2.10384  1.33795    134 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00996  5.30718  5.30718  1.46634  0.26236  2.81701  0.06165
     52   1.40073  1.94683  0.94375  1.50647    135 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01412  5.30718  4.70344  1.46634  0.26236  2.81701  0.06165
     53   2.04324  3.18038  0.28431  2.57322    136 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04055  5.30306  3.35920  1.46634  0.26236  2.82126  0.06138
     54   3.21088  4.26236  0.08076  3.76471    137 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04964  5.27305  3.13955  1.46634  0.26236  3.15684  0.04349
     55   3.54726  3.50887  4.02965  0.07960    138 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01072  5.23413  5.23413  1.46634  0.26236  1.71751  0.19786
     56   3.57880  3.50976  3.87416  0.08184    139 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01046  5.25812  5.25812  1.46634  0.26236  1.47260  0.26049
     57   4.62075  0.03673  4.68631  4.07476    140 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.03642  3.48382  5.28407  1.14472  0.38318  1.11650  0.39664
     58   1.22627  4.03670  0.41239  3.61589    145 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.05679  3.37012  3.87153  1.13831  0.38619  0.42989  1.05149
     59   0.03890  4.18885  4.59394  4.35212    150 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00962  5.34191  5.34191  1.46634  0.26236  0.36978  1.17404
     60   1.23054  1.84095  0.96885  1.77383    151 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.00937  5.36849  5.36849  1.46634  0.26236  1.37770  0.29056
     61   3.31831  2.02646  3.49402  0.22114    152 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.09121  5.36850  2.49485  1.46634  0.26236  1.37770  0.29056
     62   3.99357  0.09393  4.14086  2.89474    153 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01016  5.28745  5.28745  1.46634  0.26236  1.22830  0.34643
     63   2.68285  0.35297  2.94297  1.73542    154 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00998  5.31266  5.29746  1.46634  0.26236  2.14457  0.12456
     64   1.61424  0.97590  1.89161  1.29728    155 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.00987  5.31667  5.31667  1.46634  0.26236  2.27714  0.10823
     65   1.41595  2.32802  0.73326  1.71771    156 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00984  5.31921  5.31921  1.46634  0.26236  0.34433  1.23338
     66   2.88172  0.58095  1.72602  1.57695    157 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01673  4.52323  5.16056  0.73303  0.65480  0.49024  0.94799
     67   1.45703  0.94297  1.90829  1.47285    159 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02831  5.34341  3.76654  1.46634  0.26236  1.12230  0.39383
     68   1.27144  1.38271  1.05315  2.12163    160 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02003  4.53370  4.70044  0.74534  0.64355  1.94461  0.15437
     69   2.01089  1.81596  0.50398  2.30934    162 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01003  5.30906  5.29235  1.46634  0.26236  0.48472  0.95678
     70   1.86015  1.41311  0.74089  2.08524    163 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01055  5.31724  5.18688  1.46634  0.26236  1.23989  0.34167
     71   2.08008  0.96391  1.27974  1.53446    164 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01266  5.31565  4.87129  1.46634  0.26236  0.71684  0.67000
     72   3.00910  0.42183  2.07988  1.77269    165 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03969  3.38112  5.31760  2.65492  0.07290  0.84556  0.56092
     73   2.49126  0.46754  2.32661  1.64492    168 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01013  5.29083  5.29083  1.46634  0.26236  1.06933  0.42043
     74   0.19980  2.90470  2.40454  3.32332    169 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.05886  4.00450  3.24604  0.72817  0.65931  1.09217  0.40870
     75   4.55697  0.03811  4.96654  3.91529    171 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02795  3.94948  4.79163  0.71341  0.67328  1.92276  0.15806
     76   4.55697  0.03811  4.96654  3.91529    173 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01674  4.79163  4.79163  1.46634  0.26236  0.34588  1.22961
     77   0.03000  4.82573  4.44437  4.62667    174 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.21672  1.63557        *  0.37189  1.16935  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Ile
ACC      bact-Ile-r2-022416
STATES   245
NODES    66
CLEN     77
W        1182
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 16:37:41 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     10250
EFFN     10250.000000
CKSUM    341964354
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -9.4284 0.71884
ECMLC    0.63356    -8.49857     1.53811     1600000      693117  0.001731
ECMGC    0.32374   -36.09213   -22.82194     1600000       29365  0.013622
ECMLI    0.58266    -9.03964     1.77848     1600000      655665  0.001830
ECMGI    0.33674   -34.35549   -21.67389     1600000       28621  0.013976
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1182  2527 -18.249 -19.495  -0.993  -1.007                 
    IL     1     1 2     1     4    17    39  1185  2531  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    17    41  1186  2531  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    267 - A - -
    MR     3     2 3     5     3    20    43  1185  2530 -18.665  -0.000 -16.982                          2.000 -14.292 -13.560 -13.622 
     D     4     2 3     5     3    15    35  1181  2527 -19.745 -14.923  -0.000                         
    IR     5     5 3     5     3    17    40  1185  2530  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    266 - C - -
    MR     6     5 3     8     3    19    42  1184  2529 -18.665  -0.000 -16.982                         -15.374  2.000 -16.573 -13.475 
     D     7     5 3     8     3    15    35  1181  2527 -19.745 -14.923  -0.000                         
    IR     8     8 3     8     3    17    40  1184  2529  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    265 - C - -
    MR     9     8 3    11     3    18    41  1183  2528 -18.665  -0.000 -16.982                         -15.374  2.000 -16.573 -13.475 
     D    10     8 3    11     3    15    35  1181  2527 -19.745  -0.033  -5.448                         
    IR    11    11 3    11     3    15    34  1182  2527  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    264 - A - -
    MR    12    11 3    14     5    17    40  1182  2527  -6.340  -0.086 -18.096  -4.523  -8.839          1.637 -5.788 -0.228 -5.830 
     D    13    11 3    14     5    12    28  1167  2512 -12.430  -7.785 -10.057 -11.488  -0.009         
    IR    14    14 3    14     5    18    40  1180  2525  -8.762  -1.046  -0.965 -10.440 -11.546          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    262 G C - -
    MP    15    14 3    19     6    22    42  1181  2526 -19.132 -19.071  -0.000 -14.848 -18.128 -18.523 -0.029 -11.521 -3.382  0.939 -14.136 -13.607 -0.730 -13.676 -13.419  3.400 -13.674  0.617 -1.677 -12.862 -11.211 -11.956 
    ML    16    14 3    19     6    18    38  1177  2522 -12.811 -13.157  -7.872  -0.008 -13.007 -10.537  1.995 -8.220 -7.483 -7.613 
    MR    17    14 3    19     6    19    40  1180  2525 -16.098 -14.827  -0.078 -14.805  -4.251 -13.019 -10.203 -2.583 -11.072  1.938 
     D    18    14 3    19     6    12    28  1167  2512 -17.046 -15.744 -11.541 -12.223 -12.241  -0.001 
    IL    19    19 5    19     6    16    35  1179  2525  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    16    35  1179  2525  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    261 G C - -
    MP    21    20 6    25     6    22    40  1179  2524 -19.194 -19.133  -0.004 -17.909  -8.373 -18.584 -13.256 -5.190 -13.088 -3.650 -5.193 -13.690  1.380 -13.645 -6.477  3.608 -10.779 -2.788 -0.139 -12.963 -8.379 -12.021 
    ML    22    20 6    25     6    18    37  1176  2521 -12.817 -13.164  -6.864  -0.014 -13.013 -10.543 -6.723 -8.491  1.994 -7.484 
    MR    23    20 6    25     6    17    35  1174  2519 -11.868 -10.597  -5.692 -10.575  -0.034  -8.789 -4.445  1.409  0.302 -3.912 
     D    24    20 6    25     6    12    28  1167  2512 -17.046 -15.744 -11.541 -12.223 -12.241  -0.001 
    IL    25    25 5    25     6    16    35  1178  2523  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    16    35  1177  2523  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    260 G C - -
    MP    27    26 6    31     6    22    38  1177  2522 -19.189 -19.129  -0.002  -9.346 -15.618 -18.580 -13.160 -2.257 -12.980 -0.253 -14.078 -10.491  1.029 -13.659 -7.573  3.579 -13.661 -6.048 -0.242 -11.095 -3.492 -11.942 
    ML    28    26 6    31     6    18    36  1175  2520 -12.811 -13.157  -7.872  -0.008 -13.007 -10.537  1.995 -8.220 -7.483 -7.613 
    MR    29    26 6    31     6    17    34  1172  2518 -13.054 -11.783  -5.219 -11.762  -0.042  -9.975 -4.237  0.734 -3.427  1.132 
     D    30    26 6    31     6    12    28  1167  2512 -17.046 -15.744 -11.541 -12.223  -2.652  -0.251 
    IL    31    31 5    31     6    16    34  1176  2521  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    16    35  1176  2521  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    259 c g - -
    MP    33    32 6    37     6    21    36  1175  2520 -19.187  -7.347  -0.009 -17.903 -14.651 -18.578 -13.484 -13.184 -2.633  0.653 -6.663 -14.328  2.798 -9.192 -13.342  1.456 -13.855 -3.494  2.146 -13.666 -4.523 -10.300 
    ML    34    32 6    37     6    18    35  1174  2519 -13.114 -13.460  -0.007  -7.869 -13.310 -10.840 -6.468 -0.408 -7.241  1.691 
    MR    35    32 6    37     6    17    33  1171  2517 -13.534 -12.263  -8.172 -12.241  -0.007 -10.455  0.667 -1.249  0.977 -5.424 
     D    36    32 6    37     6    12    27  1166  2511 -16.796 -15.494  -6.021 -11.974 -11.991  -0.023 
    IL    37    37 5    37     6    16    34  1174  2519  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    18    35  1174  2519  -7.751  -0.010 -11.262  -9.430 -10.536          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      5    257 c g - -
    MP    39    38 6    43     6    19    34  1173  2518 -19.199 -19.138  -0.001 -11.219 -18.195 -18.590 -13.506 -13.205 -13.505 -0.178  1.340 -14.346  2.472 -13.024 -13.364  1.598 -13.876 -1.226  0.121 -5.456  1.307 -12.083 
    ML    40    38 6    43     6    15    32  1171  2516  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    16    32  1170  2516 -13.541 -12.270  -6.298 -12.248  -0.020 -10.462  0.639 -5.333  0.984 -1.186 
     D    42    38 6    43     6    12    27  1166  2511 -16.774 -15.473 -11.270 -11.952 -11.969  -0.001 
    IL    43    43 5    43     6    16    33  1172  2517  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    16    33  1172  2517  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      6    256 U A - -
    MP    45    44 6    49     6    17    32  1171  2516  -6.264 -19.138  -0.019 -17.914 -18.194 -18.589 -13.591 -13.296 -8.935 -0.248 -12.435 -14.407  0.650 -13.094 -13.443  1.777 -13.949 -10.868  3.038 -3.495  0.858 -4.407 
    ML    46    44 6    49     6    16    31  1170  2515  -9.063  -9.409  -0.128  -3.818  -9.259  -6.788 -2.900 -4.279  1.901 -3.637 
    MR    47    44 6    49     6    16    31  1169  2515 -13.527 -12.256  -1.103 -12.235  -0.907 -10.448  1.238 -5.585  0.250 -1.211 
     D    48    44 6    49     6    12    27  1166  2511 -16.774 -15.473 -11.270 -11.952 -11.969  -0.001 
    IL    49    49 5    49     6    16    32  1170  2516  -1.499 -10.603  -0.633 -12.258 -13.034 -12.694  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    16    31  1170  2515  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      9    255 g c - -
    MP    51    50 6    55     4    15    30  1169  2514 -18.434 -18.641  -0.000 -17.055                 -13.181 -6.586 -13.000  1.896 -14.132 -13.598 -3.359 -13.689 -4.995  2.914 -3.400  1.833 -0.090 -12.856 -8.586 -11.965 
    ML    52    50 6    55     4    14    29  1168  2513  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    14    29  1168  2513 -10.655  -9.684  -0.024  -6.117                 -6.818  1.988 -7.273 -5.890 
     D    54    50 6    55     4    12    27  1166  2511 -12.197 -11.878  -3.680  -0.118                 
    IL    55    55 5    55     4    14    30  1169  2514  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    14    30  1168  2514  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     10      - U - - -
    ML    57    56 6    59     3    13    28  1167  2512 -19.350  -0.000 -18.004                         -16.455 -15.181 -4.656  1.986 
     D    58    56 6    59     3    12    27  1166  2511 -14.195  -0.004  -8.586                         
    IL    59    59 3    59     3    13    29  1167  2513  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     11      - A - - -
    ML    60    59 3    62     2    12    27  1166  2511 -20.021  -0.000                                  1.921 -7.106 -3.681 -2.978 
     D    61    59 3    62     2    11    26  1165  2510  -8.445  -0.004                                 
    IL    62    62 3    62     2    12    28  1166  2512  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    11    26  1165  2510                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     1     6  1129  2475 -19.365  -0.000 -18.019                         
    IL    65    65 2    65     3     1     6  1129  2475  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]     67      - A - - -
    ML    66    65 2    68     3     1     6  1129  2475 -19.365  -0.089  -4.059                          1.649 -2.935 -1.419 -1.476 
     D    67    65 2    68     3     0     4  1108  2453  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     6  1129  2475  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]     68      - G - - -
    ML    69    68 3    71     3     1     6  1130  2475  -1.744  -0.512 -14.053                         -1.695 -7.230  1.857 -3.986 
     D    70    68 3    71     3     0     4  1095  2440 -16.726  -0.001 -11.117                         
    IL    71    71 3    71     3     1     6  1176  2521  -0.030  -5.723  -9.535                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    151      - G - - -
    ML    72    71 3    74     3     1     4  1095  2440 -19.338  -0.453  -1.892                         -1.403 -7.437  1.840 -4.834 
     D    73    71 3    74     3     0     3  1092  2437 -15.046 -10.559  -0.001                         
    IL    74    74 3    74     3     1     5  1096  2441  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    152      - U - - -
    ML    75    74 3    77     3     1     6  1094  2439 -18.885  -0.000 -17.539                         -3.985 -3.475 -2.846  1.891 
     D    76    74 3    77     3     0     3  1092  2437 -18.963  -0.028  -5.695                         
    IL    77    77 3    77     3     1     3  1090  2435  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    153      - C - - -
    ML    78    77 3    80     5     1     5  1093  2438 -18.290  -0.003 -18.105  -8.982 -19.209         -5.842  1.715 -6.342 -0.542 
     D    79    77 3    80     5     0     1   997  2343 -11.236  -7.079 -10.497  -0.016  -8.784         
    IL    80    80 3    80     5     1     1  1090  2435  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    154    254 g c - -
    MP    81    80 3    85     6     2     6  1092  2438  -2.640 -19.154  -0.252 -17.931 -18.211 -18.606 -13.180 -8.314 -12.999  0.615 -14.112 -9.599  0.177 -13.683 -10.256  2.850 -9.842  1.787  1.382 -12.854 -4.009 -9.112 
    ML    82    80 3    85     6     1     1  1078  2424  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1   996  2341 -13.573 -12.302  -8.210 -12.280  -0.448  -1.926  1.547 -7.067  0.088 -6.981 
     D    84    80 3    85     6     0     0  1016  2361  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     4  1091  2436 -13.343 -13.606  -0.000 -15.261 -16.037 -15.697  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1  1085  2430  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    156    253 g c - -
    MP    87    86 6    91     6     2     5  1090  2435  -3.997 -19.154  -0.093 -17.931 -18.211 -18.606 -3.143 -8.927 -13.422 -0.064 -5.769 -10.433  2.424 -7.740 -5.205  2.450 -13.818 -2.778  1.707 -13.588 -3.507 -0.876 
    ML    88    86 6    91     6     1     1  1073  2418  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     1   994  2339 -13.133 -11.862  -7.771 -11.841  -0.009 -10.054 -6.520 -8.284  1.993 -7.280 
     D    90    86 6    91     6     0     0   993  2338 -14.295 -12.993  -8.790  -9.472  -0.036  -5.565 
    IL    91    91 5    91     6     1     4  1089  2434 -11.987 -12.250  -0.001 -13.905 -14.681 -14.342  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1  1083  2428  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    158    252 a u - -
    MP    93    92 6    97     6     2     5  1088  2433 -19.215 -19.154  -0.000 -17.931 -18.211 -18.606 -13.510 -5.070 -13.509  2.565 -8.926 -14.352  1.400 -13.031 -13.369  0.465 -13.882 -1.535  2.029 -10.385 -0.112 -0.557 
    ML    94    92 6    97     6     1     1  1063  2408  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     6     1     1   992  2337 -13.573 -12.302  -1.911 -12.280  -0.448 -10.493  0.034  1.565 -7.727 -6.330 
     D    96    92 6    97     6     0     0  1006  2352  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    97    97 5    97     6     1     1  1080  2425  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1  1079  2424  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    159    251 G C - -
    MP    99    98 6   103     6     2     5  1086  2431 -19.218  -7.472  -0.008 -17.934 -18.214 -18.609 -16.267 -9.339 -16.928  0.677 -18.024 -15.223 -3.536 -17.011 -15.062  3.757 -15.353 -0.549 -3.225 -15.483 -14.995 -15.671 
    ML   100    98 6   103     6     1     1  1044  2389  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     1   738  2083 -13.133 -11.862  -7.771 -11.841  -0.009 -10.054 -7.384  1.992 -7.854 -6.415 
     D   102    98 6   103     6     0     0   989  2335  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   103   103 5   103     6     1     1  1078  2423  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1  1085  2430  -7.659  -0.011 -11.170  -9.338 -10.444          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    160    249 G C - -
    MP   105   104 6   109     4     2     3  1084  2429  -7.505  -2.023  -0.418 -17.069                 -17.181 -13.773 -19.665 -11.262 -18.797 -14.926 -13.077 -19.050 -15.144  3.987 -15.333 -2.830 -13.446 -15.397 -15.534 -18.847 
    ML   106   104 6   109     4     1     1   986  2331  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1   670  2015 -11.157 -10.186  -8.053  -0.007                 -6.520 -8.284  1.993 -7.280 
     D   108   104 6   109     4     0     0   969  2315  -4.568  -4.250  -2.265  -0.520                 
    IL   109   109 5   109     4     1     1   755  2100  -7.830  -8.514  -0.011 -10.999                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1  1184  2530  -0.020  -6.278 -10.452                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    162      - U - - -
    ML   111   110 6   113     3     1     4    12    30 -19.338  -0.000 -17.992                         -5.329 -6.900 -14.337  1.988 
     D   112   110 6   113     3     0     0    13    31 -15.013 -10.526  -0.001                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    163      - U - - -
    ML   114   113 3   116     3     1     3    11    29 -19.338  -0.000 -17.992                         -7.260 -7.211 -4.946  1.983 
     D   115   113 3   116     3     0     0    12    30 -15.013 -10.526  -0.001                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    164      - C - - -
    ML   117   116 3   119     3     1     2    10    28 -19.338  -0.000 -17.992                         -8.380  1.982 -5.484 -5.294 
     D   118   116 3   119     3     0     0    11    29 -15.013 -10.526  -0.001                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    165      - G - - -
    ML   120   119 3   122     3     1     1     8    27 -19.338  -0.000 -17.992                          0.707 -8.378  1.226 -5.294 
     D   121   119 3   122     3     0     0     9    28 -15.013  -0.002  -9.405                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    166      - A - - -
    ML   123   122 3   125     3     1     1     7    25 -19.365  -0.000 -18.019                          1.990 -8.431 -8.425 -5.496 
     D   124   122 3   125     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    167      - G - - -
    ML   126   125 3   128     3     1     1     5    24 -19.365  -0.000 -18.019                         -0.664 -1.491  1.186 -0.439 
     D   127   125 3   128     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    168      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -3.707 -1.872 -6.929  1.865 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     2     9    59    89   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     2     9    59    89                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     1     4    30    69  -0.006 -17.356  -7.881 -17.403                 
                                             [ MATP   18 ]     12     37 G C - -
    MP   136   135 1   140     6     3     6    30    69  -6.749 -19.159  -0.028  -6.666 -15.638 -18.610 -14.208 -6.284 -14.112 -0.164 -15.194 -7.603 -0.552 -14.778 -14.121  3.804 -14.351 -1.679 -3.290 -5.221 -12.251 -13.080 
    ML   137   135 1   140     6     1     3    32    70  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     2     4    30    68 -12.778 -11.507  -0.043 -11.485  -5.197  -9.699  1.011 -5.074 -5.567  0.952 
     D   139   135 1   140     6     0     2    35    73  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     2     5    29    68  -9.251  -9.514  -0.006 -11.170 -11.946 -11.606  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     3    32    70  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     14     36 C G - -
    MP   142   141 6   146     6     3     5    28    67 -19.211 -19.151  -0.004 -17.927  -8.397 -18.602 -16.270 -16.550 -9.072 -3.164 -13.938 -15.732  3.890 -3.488 -15.691 -12.759 -2.582 -14.950 -0.312 -16.104 -11.641 -14.493 
    ML   143   141 6   146     6     2     5    30    68 -13.439 -13.785  -8.499  -0.005 -13.635 -11.164 -7.301 -9.074  1.996 -8.063 
    MR   144   141 6   146     6     1     3    34    72  -8.095  -6.824  -0.763  -6.802  -1.481  -5.016 -0.655 -1.701  1.372 -1.090 
     D   145   141 6   146     6     0     2    35    74  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     3    32    71  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     3    32    70  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     15     35 U A - -
    MP   148   147 6   152     6     3     6    26    64 -19.207 -19.147  -0.000 -17.923 -12.441 -18.598 -16.263 -6.343 -15.583 -4.281 -6.417 -15.729 -0.878 -14.850 -2.578 -3.941 -15.807 -14.924  3.921 -16.101 -7.796 -14.488 
    ML   149   147 6   152     6     2     4    28    67 -13.439 -13.785  -8.499  -0.005 -13.635 -11.164 -7.301 -9.074  1.996 -8.063 
    MR   150   147 6   152     6     1     3    35    73 -12.269 -10.998  -6.906 -10.976  -5.655  -0.043  1.990 -7.148 -6.474 -6.640 
     D   151   147 6   152     6     0     2    36    74  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   152   152 5   152     6     1     3    37    75  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     3    38    76  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     16     34 C G - -
    MP   154   153 6   158     4     3     6    19    55 -18.437 -18.644  -0.000 -17.058                 -0.920 -16.548 -15.583 -12.784 -13.933 -15.727  3.903 -14.849 -2.460 -12.756 -15.807 -14.952 -2.054 -16.100 -3.545 -14.489 
    ML   155   153 6   158     4     1     3    27    66 -10.525 -10.708  -7.274  -0.011                 -7.301 -9.074  1.996 -8.063 
    MR   156   153 6   158     4     1     3    42    80  -0.547  -5.772  -3.639  -2.205                 -1.601 -2.825  1.728 -2.212 
     D   157   153 6   158     4     0     2    27    65 -10.285  -9.967  -7.982  -0.008                 
    IL   158   158 5   158     4     1     3    42    80  -0.689  -5.308  -4.056  -1.764                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     3    26    44  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     20      - A - - -
    ML   160   159 6   162     3     2     5    17    33 -19.346  -0.000 -18.000                          1.981 -4.469 -7.020 -14.476 
     D   161   159 6   162     3     0     2    15    34 -14.515 -10.028  -0.001                         
    IL   162   162 3   162     3     1     3    25    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     21      - G - - -
    ML   163   162 3   165     3     1     4    16    32 -19.346  -0.002  -9.710                         -0.621 -7.140  1.676 -2.771 
     D   164   162 3   165     3     0     2    14    33 -14.515  -6.118  -0.021                         
    IL   165   165 3   165     3     1     3    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     22      - U - - -
    ML   166   165 3   168     3     1     3    15    30 -19.345  -0.273  -2.536                         -3.811 -0.152 -0.636  1.254 
     D   167   165 3   168     3     0     2    13    31 -14.623  -2.237  -0.344                         
    IL   168   168 3   168     3     1     3    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     23      - U - - -
    ML   169   168 3   171     3     1     3    14    29  -1.335  -0.729 -17.731                         -3.233 -0.606 -0.380  1.303 
     D   170   168 3   171     3     0     2    12    28 -18.318  -0.000 -12.709                         
    IL   171   171 3   171     3     1     3    13    29  -5.377  -0.035 -15.171                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     27      - G - - -
    ML   172   171 3   174     3     1     3    12    28 -19.365  -0.000 -18.019                         -4.442 -15.613  1.959 -3.892 
     D   173   171 3   174     3     0     1    16    35  -6.174  -1.687  -0.566                         
    IL   174   174 3   174     3     1     2    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     28      - G - - -
    ML   175   174 3   177     3     1     2    11    26 -19.365  -0.244  -2.686                         -6.912 -15.660  1.994 -7.002 
     D   176   174 3   177     3     0     1    15    34  -6.174  -1.687  -0.566                         
    IL   177   177 3   177     3     1     2    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     29      - U - - -
    ML   178   177 3   180     3     1     1    10    25  -3.654  -0.712  -1.689                         -1.040 -0.802 -3.871  1.522 
     D   179   177 3   180     3     0     1     6    24 -18.098  -0.000 -12.489                         
    IL   180   180 3   180     3     1     2    10    25  -2.965  -0.198 -13.060                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     32      - U - - -
    ML   181   180 3   183     3     1     1     5    24 -18.926  -0.000 -17.581                         -0.134 -1.566 -3.622  1.417 
     D   182   180 3   183     3     0     0     4    23 -18.851  -0.000 -13.243                         
    IL   183   183 3   183     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     33      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.971 -6.460 -4.071 -6.803 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     0    41    70 -19.365  -0.007  -7.686                         
    IL   189   189 2   189     3     1     1    43    72  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     38      - G - - -
    ML   190   189 2   192     5     1     3    41    70 -18.291  -0.000 -18.106 -18.318 -19.210         -0.011 -4.688  1.564 -6.454 
     D   191   189 2   192     5     0     0    39    67 -11.074  -1.269 -10.335  -8.710  -0.782         
    IL   192   192 3   192     5     1     1    42    70  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     39     66 C G - -
    MP   193   192 3   197     6     2     2    40    69 -19.222 -19.161  -0.000 -17.937 -18.217 -18.612 -2.844 -8.013 -6.849  0.135 -2.931 -12.049  3.279 -6.605 -3.954 -2.481 -13.516 -0.434  1.902 -8.990 -2.736 -5.308 
    ML   194   192 3   197     6     1     1    39    67  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   195   192 3   197     6     1     1    39    67  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   196   192 3   197     6     0     0    30    58 -14.821 -13.519  -9.316  -9.998 -10.016  -0.005 
    IL   197   197 5   197     6     1     1    40    68  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     1    40    68  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     40     65 A U - -
    MP   199   198 6   203     6     2     2    38    67 -19.222 -19.161  -0.000 -17.937 -18.217 -18.612 -8.743 -13.219 -0.632  3.077 -11.447 -12.159  1.450 -11.751 -13.376 -1.011 -13.890 -1.866  1.747 -13.701 -4.860 -5.552 
    ML   200   198 6   203     6     1     1    37    65  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   201   198 6   203     6     1     1    37    66  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   202   198 6   203     6     0     0    28    57 -14.821 -13.519  -9.316  -9.998 -10.016  -0.005 
    IL   203   203 5   203     6     1     1    38    66  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     1    38    66  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     41     64 C G - -
    MP   205   204 6   209     6     2     2    36    65 -19.222 -19.161  -0.223  -3.511  -4.167 -14.152 -11.927 -11.804 -6.548  0.239 -12.408 -4.987  3.072 -13.050 -13.380  2.060 -13.887 -6.319 -0.814 -13.679  0.694 -12.094 
    ML   206   204 6   209     6     1     1    36    64  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   207   204 6   209     6     1     1    37    66  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   208   204 6   209     6     0     0    27    55 -14.821 -13.519  -9.316  -9.998 -10.016  -0.005 
    IL   209   209 5   209     6     1     1    36    64  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1    36    64  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     42     63 G C - -
    MP   211   210 6   215     6     2     2    34    62  -2.084  -5.802  -0.422 -17.714 -17.994 -18.389 -13.029 -10.419 -12.877 -0.542 -8.536 -11.773  2.453 -11.711 -13.208  3.138 -13.508 -3.063 -2.573 -10.888 -0.438 -11.775 
    ML   212   210 6   215     6     1     1    35    63  -0.002 -16.934 -10.682 -11.343 -16.784 -14.313  1.999 -11.790 -11.043 -9.280 
    MR   213   210 6   215     6     1     1    36    65 -16.467  -0.002 -11.104 -15.174 -10.308 -13.387  1.999 -11.156 -10.396 -10.491 
     D   214   210 6   215     6     0     0    21    50 -14.846 -13.545  -5.700 -10.024 -10.041  -0.031 
    IL   215   215 5   215     6     1     1    34    62  -0.957 -15.509  -1.044 -17.164 -17.940 -17.601  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     1    35    64  -0.909  -1.097 -15.891 -14.059 -15.165          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]     49     59 c g - -
    MP   217   216 6   221     4     2     2    15    33 -18.451 -18.658  -0.078  -4.245                 -13.229 -1.342 -13.067  0.752 -11.991 -1.012  2.564 -11.949 -13.433  2.305 -13.716 -1.842 -2.604 -12.953 -1.506  0.827 
    ML   218   216 6   221     4     1     1    24    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   219   216 6   221     4     1     1    23    42  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   220   216 6   221     4     0     0    18    37 -10.244  -9.926  -7.941  -0.009                 
    IL   221   221 5   221     4     1     1    25    44  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     50      - u - - -
    ML   223   222 6   225     3     1     1    13    30 -19.282  -0.000 -17.937                         -13.153  0.877 -2.064  0.944 
     D   224   222 6   225     3     0     0    12    30 -16.611  -0.077  -4.268                         
    IL   225   225 3   225     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     51      - U - - -
    ML   226   225 3   228     3     1     1    12    29 -19.361  -0.000 -18.015                         -16.415 -2.324 -17.817  1.926 
     D   227   225 3   228     3     0     0    14    32 -12.349  -7.862  -0.006                         
    IL   228   228 3   228     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     52      - g - - -
    ML   229   228 3   231     3     1     1    11    28 -19.361  -0.000 -18.015                         -0.266 -0.263  0.683 -0.456 
     D   230   228 3   231     3     0     0    12    31 -12.349  -7.862  -0.006                         
    IL   231   231 3   231     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     53      - u - - -
    ML   232   231 3   234     3     1     1    10    27  -2.552  -0.321  -5.124                          0.271 -0.709 -0.266  0.433 
     D   233   231 3   234     3     0     0     8    26 -12.349  -7.862  -0.006                         
    IL   234   234 3   234     3     1     1    10    26  -3.850  -0.104 -14.306                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     56      - u - - -
    ML   235   234 3   237     3     1     1     7    25 -19.319  -0.000 -17.973                          0.336 -0.700 -0.700  0.591 
     D   236   234 3   237     3     0     0     8    26 -15.794  -3.459  -0.138                         
    IL   237   237 3   237     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     57      - A - - -
    ML   238   237 3   240     3     1     1     5    24 -19.323  -0.000 -17.977                          1.923 -14.889 -2.262 -14.453 
     D   239   237 3   240     3     0     0     7    25 -15.657 -11.170  -0.001                         
    IL   240   240 3   240     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     58      - A - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                  1.529 -0.029 -6.892 -2.986 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Ile
ACC   bact-Ile-r2-022416
LENG  77
MAXL  1148
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 16:37:42 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile-r2-022416.sto
NSEQ  10250
EFFN  10.004878
CKSUM 341964354
STATS LOCAL MSV       -8.5161  0.71884
STATS LOCAL VITERBI   -9.5568  0.71884
STATS LOCAL FORWARD   -3.5652  0.71884
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45094  1.40274  1.26961  1.43219
          1.38629  1.38629  1.38629  1.38629
          0.05051  4.88103  3.17807  1.46634  0.26236  0.00000        *
      1   1.59895  2.54839  0.44764  2.51888      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01584  4.84636  4.84636  1.46634  0.26236  0.31063  1.32044
      2   2.18424  1.91395  0.45396  2.25541      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01782  4.88149  4.59714  1.46634  0.26236  1.09861  0.40547
      3   1.93649  2.10471  0.45457  2.31076      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01534  4.87900  4.87721  1.46634  0.26236  1.19202  0.36184
      4   1.99674  0.98704  1.64074  1.21164      4 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.01535  4.87909  4.87524  1.46634  0.26236  1.19997  0.35840
      5   2.09780  0.93854  1.54924  1.29586      5 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.01532  4.87920  4.87920  1.46634  0.26236  1.19549  0.36033
      6   2.17355  1.55860  1.53769  0.77453      6 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.02639  3.99333  4.87926  0.86477  0.54671  1.19943  0.35863
      7   1.50352  2.78256  0.47833  2.34384      9 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01528  4.88210  4.88210  1.46634  0.26236  0.92315  0.50628
      8   3.50492  3.39488  3.70412  0.09235     10 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01522  4.88604  4.88604  1.46634  0.26236  1.09861  0.40547
      9   0.11414  3.66772  3.26830  3.11773     11 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01868  4.89473  4.50777  1.46634  0.26236  1.09861  0.40547
     10   2.10243  2.69308  0.28492  2.84568     12 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02307  4.18142  4.88937  0.79947  0.59705  0.86352  0.54762
     11   3.62701  0.16677  3.37567  2.37710     14 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01758  4.89465  4.61131  1.46634  0.26236  1.09376  0.40790
     12   4.11959  2.80961  3.74323  0.10554     15 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89226  4.89226  1.46634  0.26236  1.20279  0.35718
     13   3.31617  0.14182  3.47598  2.73339     16 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02365  4.87298  4.15281  1.44187  0.26982  1.20279  0.35718
     14   0.04972  4.05290  4.08661  4.24474     20 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01540  4.88401  4.86473  1.46634  0.26236  1.48708  0.25623
     15   1.78186  3.38933  0.31232  2.71512     21 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01626  4.88386  4.76068  1.46634  0.26236  1.47219  0.26062
     16   2.21107  1.52656  1.90100  0.64681     22 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.17296  4.88302  1.88881  1.46634  0.26236  1.23156  0.34508
     17   2.04424  1.72969  1.77591  0.64655     23 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.41138  1.11338  4.73083  0.07545  2.62177  0.09017  2.45081
     18   3.56023  4.70522  0.06247  3.76885     27 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89473  4.89473  1.46634  0.26236  1.09861  0.40547
     19   4.18671  5.31345  0.03003  4.66035     28 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.15639  4.89473  1.98568  1.46634  0.26236  1.09861  0.40547
     20   1.87365  1.83628  2.77321  0.47070     29 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.40518  2.61695  1.34661  0.32396  1.28474  0.10351  2.31941
     21   1.46826  2.01871  2.51604  0.58686     32 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01935  4.64772  4.64772  1.46634  0.26236  0.06405  2.77999
     22   0.05856  4.23108  3.63682  4.13477     33 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02595  4.89473  4.01000  1.46634  0.26236  1.09861  0.40547
     23   2.63338  3.87520  0.12530  3.68168     34 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01525  4.88402  4.88402  1.46634  0.26236  1.20332  0.35695
     24   0.11088  4.11868  2.67541  3.92147     35 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01521  4.88650  4.88650  1.46634  0.26236  1.40971  0.28000
     25   2.54609  3.80102  0.14532  3.36620     36 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01521  4.88650  4.88650  1.46634  0.26236  0.67027  0.71656
     26   3.07890  0.33643  2.55224  1.82159     37 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01921  4.89473  4.46186  1.46634  0.26236  1.09861  0.40547
     27   1.41950  3.32953  0.38653  3.14787     38 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01515  4.89066  4.89066  1.46634  0.26236  1.06292  0.42380
     28   2.07898  0.78854  1.99000  1.25970     39 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  1.19943  0.35863
     29   1.04252  1.46715  1.87515  1.33362     40 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  1.19943  0.35863
     30   2.14730  0.87037  1.42153  1.50031     41 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.06353  4.89234  2.91792  1.46634  0.26236  1.19943  0.35863
     31   1.88696  1.35094  0.80320  1.95491     42 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.31424  1.34023  4.84470  0.74376  0.64497  0.27905  1.41266
     32   1.68707  1.23784  1.19312  1.50663     49 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.06086  4.89234  2.96546  1.46634  0.26236  1.19943  0.35863
     33   2.54852  0.90385  2.56498  0.82126     50 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01582  4.84731  4.84731  1.46634  0.26236  0.29083  1.37691
     34   3.63458  2.72333  4.14606  0.11415     51 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  1.19943  0.35863
     35   1.39822  1.62229  1.13309  1.45466     52 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  1.19943  0.35863
     36   1.19268  1.75987  1.61532  1.12179     53 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.20011  1.89775  3.45934  0.16048  1.90876  1.19943  0.35863
     37   1.16995  1.75077  1.78085  1.05705     56 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01550  4.86810  4.86810  1.46634  0.26236  1.59699  0.22628
     38   0.09348  4.18895  2.86688  4.06242     57 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01546  4.87055  4.87055  1.46634  0.26236  1.82314  0.17616
     39   0.40431  1.60061  3.12324  2.44441     58 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01794  4.87055  4.59427  1.46634  0.26236  0.39013  1.13000
     40   1.97450  1.22567  1.14739  1.38572     59 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.15979  2.70569  2.51509  0.83062  0.57231  1.19943  0.35863
     41   2.16122  0.85204  1.19020  1.87008     63 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01633  4.81616  4.81616  1.46634  0.26236  0.19486  1.73132
     42   1.95300  1.49411  0.70195  1.97988     64 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  1.19943  0.35863
     43   1.48024  2.07260  1.27212  1.00424     65 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  1.19943  0.35863
     44   1.37007  2.34464  0.72255  1.80473     66 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01512  4.89234  4.89234  1.46634  0.26236  0.92315  0.50628
     45   0.37173  2.61295  2.21444  2.05630     67 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.06731  4.89472  2.85405  1.46634  0.26236  1.09861  0.40547
     46   2.38083  3.79122  0.16709  3.24843     68 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.30458  1.36789  4.83758  3.88007  0.02087  0.23102  1.57854
     47   2.28352  3.87908  0.16866  3.42305    151 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.28958  4.89469  1.41085  1.46634  0.26236  1.10053  0.40451
     48   2.78996  2.71755  2.99974  0.19512    152 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01980  4.62492  4.62492  1.46634  0.26236  0.07836  2.58539
     49   3.10413  0.28467  3.74967  1.71843    153 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01683  4.89017  4.69199  1.46634  0.26236  1.28286  0.32468
     50   1.85780  2.27410  0.53520  1.86082    154 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.16134  1.95572  4.88853  0.10329  2.32142  1.34186  0.30294
     51   2.02803  1.19057  1.22868  1.30314    156 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.06973  2.81643  4.88852  0.23523  1.56249  1.34186  0.30294
     52   1.31808  1.46872  1.73742  1.12038    158 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.01518  4.88852  4.88852  1.46634  0.26236  1.14367  0.38367
     53   2.06044  3.34549  0.22810  3.18665    159 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01515  4.89017  4.89017  1.46634  0.26236  1.28286  0.32468
     54   3.75650  4.83838  0.04037  4.79376    160 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.03088  4.41344  4.00099  0.97524  0.47337  1.28286  0.32468
     55   3.55244  3.52686  4.23170  0.07535    162 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01532  4.87934  4.87934  1.46634  0.26236  1.61742  0.22116
     56   3.39842  3.29800  3.70030  0.09993    163 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01532  4.87934  4.87934  1.46634  0.26236  1.61742  0.22116
     57   4.16238  0.05827  4.29003  3.59963    164 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01532  4.87934  4.87934  1.46634  0.26236  1.61742  0.22116
     58   0.92786  3.58638  0.62420  3.18905    165 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01532  4.87934  4.87934  1.46634  0.26236  0.50554  0.92428
     59   0.03494  4.68329  4.39360  4.36382    166 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89473  4.89473  1.46634  0.26236  1.09861  0.40547
     60   1.59946  2.14229  0.74996  1.56913    167 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89473  4.89473  1.46634  0.26236  1.09861  0.40547
     61   2.99129  2.48091  3.69689  0.17280    168 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.24767  1.55164  4.89474  4.27770  0.01397  1.09861  0.40547
     62   4.80666  0.05666  4.64901  3.28762    249 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01985  4.40908  4.89473  0.96788  0.47785  1.09861  0.40547
     63   3.39984  0.28744  3.17445  1.74511    251 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89473  4.89473  1.46634  0.26236  1.09861  0.40547
     64   1.38971  1.90995  1.25063  1.15062    252 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01675  4.89473  4.69654  1.46634  0.26236  1.09861  0.40547
     65   1.48745  1.31894  1.09128  1.76697    253 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01511  4.89308  4.89308  1.46634  0.26236  0.97095  0.47598
     66   1.98631  0.78858  2.12220  1.24292    254 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01523  4.88533  4.88533  1.46634  0.26236  1.09861  0.40547
     67   2.51558  0.72932  2.56248  1.02211    255 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01558  4.88533  4.84080  1.46634  0.26236  1.09861  0.40547
     68   0.99029  1.61434  1.22790  1.99067    256 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.01523  4.88498  4.88498  1.46634  0.26236  1.06915  0.42053
     69   1.42533  1.70161  0.86569  1.85520    257 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02712  4.37388  4.25777  0.94700  0.49087  1.09861  0.40547
     70   1.33331  1.75062  0.89794  1.86226    259 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01719  4.87856  4.66280  1.46634  0.26236  1.19969  0.35852
     71   2.50591  0.50028  1.98080  1.74823    260 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01537  4.87800  4.87490  1.46634  0.26236  1.37289  0.29219
     72   2.40025  0.51574  1.82088  1.89471    261 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01534  4.87798  4.87798  1.46634  0.26236  0.83775  0.56684
     73   2.36516  0.59355  2.35662  1.35108    262 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02032  4.37894  4.88336  0.95255  0.48736  0.96006  0.48268
     74   0.31372  3.54551  1.58192  3.35698    264 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.36073  4.69207  1.22532  1.46634  0.26236  1.09861  0.40547
     75   3.94715  0.06937  4.45545  3.32157    265 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02596  4.35730  4.35730  1.46634  0.26236  3.52731  0.02982
     76   3.94715  0.06937  4.45545  3.32157    266 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02596  4.35730  4.35730  1.46634  0.26236  3.52731  0.02982
     77   0.05693  4.19025  3.83694  3.98264    267 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01306  4.34441        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Leu
ACC      bact-Leu-r2-022416
STATES   274
NODES    75
CLEN     85
W        1380
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 16:58:48 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Leu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Leu-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Leu-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     23606
EFFN     23606.000000
CKSUM    2560531045
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -9.4006 0.71877
ECMLC    0.56958    -9.41244     1.54858     1600000      617385  0.001944
ECMGC    0.32864   -28.15459   -15.51828     1600000       25444  0.015721
ECMLI    0.51321   -10.15569     1.85995     1600000      571850  0.002098
ECMGI    0.35159   -24.61694   -12.94004     1600000       24270  0.016481
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     0     1  1380  2988 -19.453 -20.698  -0.754  -1.297                 
    IL     1     1 2     1     4    18    39  1385  2993  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    19    40  1385  2993  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    288 - A - -
    MR     3     2 3     5     3    21    40  1384  2992 -20.107  -0.000 -18.425                          2.000 -15.731 -15.016 -15.061 
     D     4     2 3     5     3    15    35  1381  2989 -20.658 -15.836  -0.000                         
    IR     5     5 3     5     3    19    40  1384  2992  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    287 - C - -
    MR     6     5 3     8     3    20    39  1383  2991 -20.107  -0.000 -18.425                         -16.956  2.000 -18.311 -14.955 
     D     7     5 3     8     3    15    35  1381  2989 -20.658 -15.836  -0.000                         
    IR     8     8 3     8     3    19    39  1383  2991  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    286 - C - -
    MR     9     8 3    11     3    19    38  1382  2990 -20.107  -0.000 -18.425                         -16.956  2.000 -18.311 -14.955 
     D    10     8 3    11     3    15    35  1381  2989 -20.658  -0.010  -7.188                         
    IR    11    11 3    11     3    13    33  1382  2990  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    285 - A - -
    MR    12    11 3    14     5    18    37  1381  2989  -7.001  -0.121 -19.312  -3.781 -20.416          1.824 -2.899 -2.419 -2.850 
     D    13    11 3    14     5    10    27  1371  2979 -11.608  -6.963  -9.234 -10.665  -0.015         
    IR    14    14 3    14     5    19    40  1381  2989  -9.311  -0.004 -12.822 -10.990 -12.096          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    283 G C - -
    MP    15    14 3    19     6    21    39  1380  2988 -20.316 -20.255  -0.000 -19.032 -19.311 -19.706 -14.313 -12.955 -14.131 -1.104 -5.124 -14.725 -0.708 -10.547 -14.566  3.698 -11.375  0.461 -0.969 -13.988 -5.252 -13.095 
    ML    16    14 3    19     6    13    32  1378  2986  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    15    32  1375  2983 -18.055 -16.784  -2.485 -16.762  -0.284 -14.976 -5.688  1.977 -11.257 -4.550 
     D    18    14 3    19     6    10    27  1371  2979 -15.971 -14.669 -10.466 -11.148 -11.166  -0.002 
    IL    19    19 5    19     6    14    33  1379  2987  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    14    34  1379  2987  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    282 C G - -
    MP    21    20 6    25     6    19    37  1378  2986 -20.336 -20.275  -0.040  -5.961  -6.463 -19.726 -5.905 -14.332 -2.379 -0.259 -5.564 -15.477  3.473 -14.154 -14.493  1.424 -2.899 -2.266 -1.151 -14.816 -1.481 -13.212 
    ML    22    20 6    25     6    13    33  1377  2984  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    23    20 6    25     6    14    31  1373  2981 -17.771 -16.500 -12.409 -16.479  -0.000 -14.692 -6.998 -6.442  1.993 -11.772 
     D    24    20 6    25     6    10    27  1371  2979 -15.971 -14.669 -10.466 -11.148 -11.166  -0.002 
    IL    25    25 5    25     6    14    33  1377  2985  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    14    33  1377  2985  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    281 c g - -
    MP    27    26 6    31     6    18    35  1376  2984  -6.699 -20.235  -0.024 -12.337  -7.183 -19.686 -14.541 -10.377 -11.529  1.106 -13.613 -15.300  2.913 -8.455 -14.461  2.468 -11.445 -9.168 -0.432 -7.102 -5.069 -13.152 
    ML    28    26 6    31     6    18    34  1375  2983 -15.253 -15.599  -0.002 -10.008 -15.449 -12.978 -8.746  1.950 -2.936 -8.251 
    MR    29    26 6    31     6    13    30  1372  2980 -18.008 -16.737 -11.133 -16.715  -0.001 -14.929 -0.917 -0.608  1.488 -6.937 
     D    30    26 6    31     6    10    27  1371  2979 -15.971 -14.669 -10.466 -11.148 -11.166  -0.002 
    IL    31    31 5    31     6    16    33  1374  2982  -1.002 -11.629  -9.547  -1.003 -14.061 -13.721  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    14    33  1375  2983  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      6    280 G C - -
    MP    33    32 6    37     6    17    33  1374  2982 -20.296 -20.235  -0.000 -14.305 -19.291 -19.686 -14.267 -7.205 -14.087  0.629 -15.185 -14.683  1.930 -14.766 -14.520  3.282 -14.768 -3.418 -0.897 -2.040 -4.827 -13.050 
    ML    34    32 6    37     6    15    31  1372  2980 -14.505 -14.851  -5.733  -0.028 -14.701 -12.230  1.998 -9.792 -9.027 -9.136 
    MR    35    32 6    37     6    12    29  1371  2979 -18.131 -16.860  -5.990 -16.838  -0.142  -3.679 -1.117 -0.614  0.974 -0.119 
     D    36    32 6    37     6    10    27  1371  2979 -15.971 -14.669  -1.504 -11.148 -11.166  -0.629 
    IL    37    37 5    37     6    13    31  1374  2982  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    13    31  1373  2981  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      7    279 g c - -
    MP    39    38 6    43     6    15    31  1372  2980 -20.299  -5.977  -0.023 -19.015 -12.156 -19.690 -9.882 -0.127 -9.981  2.428 -8.186 -5.419  0.699 -5.888 -14.483  2.431 -14.741 -0.028  0.206 -11.920 -1.480 -2.751 
    ML    40    38 6    43     6    14    30  1371  2979 -14.487 -14.833  -0.003  -9.242 -14.683 -12.212  1.991 -9.520 -5.956 -7.361 
    MR    41    38 6    43     6    11    28  1370  2978 -17.989  -2.402  -3.698 -16.696  -0.447 -14.910 -8.633  1.293 -0.908  0.020 
     D    42    38 6    43     6     9    27  1370  2977 -17.447 -16.145  -0.382 -12.625 -12.642  -2.106 
    IL    43    43 5    43     6    12    29  1372  2979  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    14    31  1372  2980  -2.056  -0.397 -15.038 -13.205 -14.311          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      8    276 a u - -
    MP    45    44 6    49     6    13    29  1370  2978  -4.985 -20.290  -0.046 -19.066 -19.346 -19.741 -4.502 -3.334 -12.591  2.217 -8.629 -2.790  1.454 -12.938 -11.699  2.149 -11.716 -1.455  1.351 -2.388 -1.082 -1.708 
    ML    46    44 6    49     6    11    28  1369  2977  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    10    27  1369  2977 -17.548 -16.277  -2.833 -16.256  -0.218 -14.469 -9.005  1.022 -1.371  0.661 
     D    48    44 6    49     6     8    25  1367  2975 -15.345 -14.044  -9.841 -10.523 -10.540  -0.004 
    IL    49    49 5    49     6    12    29  1370  2978  -1.294  -3.364  -1.015 -14.808 -15.584 -15.244  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    12    28  1369  2977  -8.651  -0.006 -12.162 -10.330 -11.436          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     12    274 G C - -
    MP    51    50 6    55     4    11    27  1368  2976 -19.591  -6.063  -0.032  -7.185                 -14.324 -8.856 -14.143  1.348 -15.273 -4.196 -1.161 -14.833 -3.698  3.417 -11.290 -0.233 -0.956 -1.762 -7.536 -0.935 
    ML    52    50 6    55     4    10    26  1368  2976  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4     9    26  1368  2976 -15.357 -14.386  -4.797  -0.053                 -12.848  1.390 -14.108  0.464 
     D    54    50 6    55     4     8    25  1367  2975 -10.769 -10.450  -8.466  -0.006                 
    IL    55    55 5    55     4    10    27  1368  2976  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    10    27  1369  2977  -0.730  -1.333 -13.168                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     13      - U - - -
    ML    57    56 6    59     3     9    25  1366  2974 -20.493  -0.000 -19.147                         -15.415 -6.447 -6.371  1.991 
     D    58    56 6    59     3     8    25  1367  2975  -1.094  -0.913 -12.077                         
    IL    59    59 3    59     3     9    26  1368  2976  -0.641  -1.603  -5.070                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     18      - G - - -
    ML    60    59 3    62     2     8    24  1365  2973 -21.221  -0.000                                 -0.168 -3.051  1.523 -3.108 
     D    61    59 3    62     2     7    23  1364  2972 -11.416  -0.001                                 
    IL    62    62 3    62     2     8    25  1366  2974  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3    64   176     7    23  1364  2972                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S    64    63 1    65     1     0     1  1334  2942   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B    65    64 1    66   119     0     1  1334  2942                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S    66    65 1    67     4     0     0    57   119  -0.175  -5.468  -9.040  -3.473                 
                                             [ MATP   18 ]     19     54 G C - -
    MP    67    66 1    71     6     2     3    52   114 -20.253 -20.193  -0.025 -18.969  -5.887 -19.644 -7.614 -1.438 -4.810 -1.443 -15.166 -14.630 -1.494 -14.725 -14.473  3.798 -9.127 -2.022 -1.673 -11.760 -1.939 -2.860 
    ML    68    66 1    71     6     1     1    67   129 -15.837 -16.183  -5.335  -0.115  -4.272 -13.563 -9.672 -11.359  1.904 -1.962 
    MR    69    66 1    71     6     1     1    64   126 -12.821 -11.550  -7.459 -11.528  -0.011  -9.742  1.993 -7.715 -7.003 -7.147 
     D    70    66 1    71     6     0     0    62   124 -20.979 -19.677 -15.474 -16.156 -16.174  -0.000 
    IL    71    71 5    71     6     1     1    59   121  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    72    72 6    72     5     1     1    58   120  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     20     53 C G - -
    MP    73    72 6    77     6     2     2    45   107  -7.371 -20.169  -0.022 -18.945  -6.900 -10.849 -14.754 -14.469 -10.408 -2.719 -6.144 -9.025  3.281 -9.002 -14.597 -1.051 -15.093 -12.048  2.414 -14.925 -1.781 -7.653 
    ML    74    72 6    77     6     1     1    66   128 -15.723 -16.069  -3.527  -0.131 -15.919 -13.449 -10.174 -10.994  1.480  0.275 
    MR    75    72 6    77     6     1     1    63   125 -16.048 -14.777 -10.686 -14.755  -3.483  -0.136 -3.310 -7.426 -1.806  1.851 
     D    76    72 6    77     6     0     0    62   124 -20.979 -19.677 -15.474 -16.156 -10.492  -0.001 
    IL    77    77 5    77     6     1     1    43   105  -9.636  -9.899  -0.004 -11.554 -12.330 -11.991  0.000  0.000  0.000  0.000 
    IR    78    78 6    78     5     1     1    56   118  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     22     52 G C - -
    MP    79    78 6    83     6     2     3    39   101 -20.220  -5.504  -0.040 -11.670  -7.586 -19.610 -15.017 -6.398 -14.900 -2.629 -15.992 -7.426 -0.015 -15.572 -1.487  3.677 -9.012 -4.536  0.689 -5.186 -13.054 -13.867 
    ML    80    78 6    83     6     1     1    66   127 -15.593 -15.939 -10.654  -0.001 -15.789 -13.319 -9.390 -11.157  1.999 -10.145 
    MR    81    78 6    83     6     1     1    57   119 -15.041 -13.770  -0.288 -13.748  -8.882  -2.485  1.235 -1.873 -0.182 -1.022 
     D    82    78 6    83     6     0     0    62   124 -21.226 -19.924 -15.721 -16.404 -16.421  -0.000 
    IL    83    83 5    83     6     1     1    57   119  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    84    84 6    84     5     1     1    35    97 -10.596  -0.001 -14.107 -12.275 -13.381          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     23     50 G A - -
    MP    85    84 6    89     4     2     2    28    82 -19.454 -19.661  -0.000 -13.173                  1.906 -6.753 -7.382 -13.799  0.032 -16.745  0.271 -5.503  3.184 -8.982 -1.410 -7.632 -4.143 -4.147 -1.759 -3.255 
    ML    86    84 6    89     4     1     1    65   126  -0.003 -12.880  -9.446 -11.609                 -10.082  1.979 -10.500 -4.164 
    MR    87    84 6    89     4     1     1    36    98 -12.079 -11.108  -8.975  -0.004                 -7.376 -9.149  1.996 -8.137 
     D    88    84 6    89     4     0     0    62   124  -0.667 -16.351  -7.615  -1.454                 
    IL    89    89 5    89     4     1     1    64   125  -0.429 -15.656  -1.958 -18.142                  0.000  0.000  0.000  0.000 
    IR    90    90 6    90     3     1     1    29    51  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     32      - A - - -
    ML    91    90 6    93     3     1     2    26    48 -20.503  -0.000 -19.157                          1.938 -6.894 -7.554 -2.687 
     D    92    90 6    93     3     0     0    23    45 -17.487  -3.168  -0.170                         
    IL    93    93 3    93     3     1     1    28    50  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     33      - A - - -
    ML    94    93 3    96     3     1     1    25    47 -20.510  -0.008  -7.469                          1.863 -4.624 -1.674 -7.047 
     D    95    93 3    96     3     0     0    22    44 -17.317  -6.114  -0.021                         
    IL    96    96 3    96     3     1     1    27    49  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     34      - U - - -
    ML    97    96 3    99     3     1     1    24    46 -20.503  -0.370  -2.144                         -3.027 -0.602 -5.159  1.674 
     D    98    96 3    99     3     0     0    22    44 -17.486 -12.999  -0.000                         
    IL    99    99 3    99     3     1     1    26    48  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     35      - U - - -
    ML   100    99 3   102     3     1     1    23    46  -3.954  -0.096 -18.787                         -1.379 -1.304 -13.794  1.683 
     D   101    99 3   102     3     0     0    22    44 -20.046  -0.305  -2.392                         
    IL   102   102 3   102     3     1     1    24    47  -1.514  -0.634  -7.459                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     39      - G - - -
    ML   103   102 3   105     3     1     1    22    44  -6.331  -0.018 -19.148                         -5.860 -7.667  1.958 -3.436 
     D   104   102 3   105     3     0     0    18    40 -17.666  -2.632  -0.254                         
    IL   105   105 3   105     3     1     1    25    48  -1.167  -0.851 -12.412                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     42      - G - - -
    ML   106   105 3   108     3     1     1    20    42 -20.506  -0.000 -19.160                         -6.519 -16.803  1.996 -15.775 
     D   107   105 3   108     3     0     0    15    37 -17.413  -4.571  -0.062                         
    IL   108   108 3   108     3     1     1    22    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     43      - U - - -
    ML   109   108 3   111     3     1     1    19    41  -3.857  -0.251  -3.465                         -1.992  0.413 -5.676  1.261 
     D   110   108 3   111     3     0     0     7    29 -17.351 -12.864  -0.000                         
    IL   111   111 3   111     3     1     1    21    43  -1.236  -0.797 -14.843                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     48      - A - - -
    ML   112   111 3   114     3     1     1     4    23 -20.372  -0.002  -9.692                          1.783 -2.139 -3.700 -1.979 
     D   113   111 3   114     3     0     0     4    23 -19.011  -0.546  -1.667                         
    IL   114   114 3   114     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     49      - G - - -
    ML   115   114 3   117     2     1     1     1     1       *   0.000                                 -0.251 -5.451  1.574 -2.648 
     D   116   114 3   117     2     0     0     0     0       *   0.000                                 
    IL   117   117 3   117     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   118   117 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   119    65 1   120     3     0     0  1318  2926 -20.568  -0.105  -3.831                         
    IL   120   120 2   120     3     1     1  1322  2930  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     55      - G - - -
    ML   121   120 2   123     5     1     1  1306  2914  -5.516  -0.216  -3.721  -6.376  -5.100          0.707 -3.076  1.097 -3.179 
     D   122   120 2   123     5     0     0  1405  3013 -16.113  -2.744 -15.374  -0.476  -2.923         
    IL   123   123 3   123     5     1     1  1403  3011 -10.688  -8.775  -0.004 -14.199 -13.472          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     57    210 C G - -
    MP   124   123 3   128     6     2     3  1268  2876  -5.570 -20.066  -0.081  -7.574  -5.146 -19.517 -14.420 -14.115 -7.745  1.431 -1.213 -8.668  3.340 -6.839 -14.280  0.763 -11.860 -1.501 -0.960 -3.036 -4.891 -7.187 
    ML   125   123 3   128     6     1     2  1402  3010 -17.844 -18.190 -12.904  -0.000 -18.039 -15.569  1.432  0.332 -10.913 -4.533 
    MR   126   123 3   128     6     1     2  1418  3026 -17.822 -16.551 -12.459 -16.529  -0.000 -14.742 -11.077 -12.831  2.000 -11.822 
     D   127   123 3   128     6     0     0  1404  3012 -19.671 -18.370 -14.167 -14.849 -14.866  -0.000 
    IL   128   128 5   128     6     1     1  1254  2862 -11.327  -0.003  -9.508 -13.245 -14.022 -13.682  0.000  0.000  0.000  0.000 
    IR   129   129 6   129     5     1     1  1253  2861  -1.525  -0.616 -14.564 -12.732 -13.837          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     59    207 c g - -
    MP   130   129 6   134     6     2     5  1251  2859 -20.078 -20.017  -0.000 -18.793 -19.073 -19.468 -14.373 -5.536 -14.372  1.424 -13.242 -15.216  2.463 -6.044 -14.232  1.013 -14.745 -3.715  2.461 -5.352 -3.875 -3.781 
    ML   131   129 6   134     6     1     1  1401  3009 -17.910 -18.256  -5.881  -0.400 -18.106  -2.150 -5.423  1.151  0.778 -4.582 
    MR   132   129 6   134     6     1     2  1417  3025 -18.277 -17.006 -12.915 -16.984  -0.000 -15.198 -11.534 -13.284  2.000 -12.275 
     D   133   129 6   134     6     0     0  1404  3012 -19.671 -18.370 -14.167 -14.849 -14.866  -0.000 
    IL   134   134 5   134     6     1     1  1299  2907  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   135   135 6   135     5     1     1  1296  2904  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     60    206 a u - -
    MP   136   135 6   140     6     2     3  1249  2857 -20.081  -5.312  -0.153  -5.276  -4.330 -19.471 -11.709 -9.866 -13.870  2.853 -10.257 -14.467  0.331 -10.397 -14.305  2.694 -14.553 -6.571 -0.006 -4.771 -12.064 -12.834 
    ML   137   135 6   140     6     1     1  1401  3009 -17.510 -17.856 -12.570  -0.274 -17.706  -2.534 -0.278 -0.534 -10.309  1.313 
    MR   138   135 6   140     6     1     2  1416  3024 -18.277 -17.006 -12.915 -16.984  -0.000 -15.198 -13.798  2.000 -14.812 -12.049 
     D   139   135 6   140     6     0     0  1404  3012 -20.339 -19.037 -14.834  -5.906 -15.534  -0.024 
    IL   140   140 5   140     6     1     1  1309  2917  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1  1399  3007 -10.648  -8.736  -0.005 -12.327 -13.433          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     61    204 G C - -
    MP   142   141 6   146     6     2     4  1169  2777  -8.253  -7.048  -0.042 -18.643  -5.822 -19.318 -13.955 -8.602 -13.776 -3.327 -14.888 -10.953  0.484 -14.457 -14.200  3.618 -14.448  0.455 -4.571 -13.630 -0.310 -9.326 
    ML   143   141 6   146     6     1     1  1399  3007  -3.502 -18.337 -13.052  -4.355  -3.159  -0.413  1.684 -2.675 -0.665 -11.595 
    MR   144   141 6   146     6     1     2  1415  3023 -18.824 -17.553 -13.462 -17.531  -0.000 -15.745  0.918  1.077 -15.794 -12.663 
     D   145   141 6   146     6     0     0  1404  3012 -20.600 -19.299 -15.096 -15.778 -15.795  -0.000 
    IL   146   146 5   146     6     1     1  1141  2749 -10.720  -0.338  -2.265 -12.638 -13.414 -13.074  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1  1139  2747 -10.175  -0.002 -13.686 -11.854 -12.960          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]     63    202 A U - -
    MP   148   147 6   152     4     2     2  1138  2745 -19.150  -4.591  -0.076  -6.711                 -14.202 -1.566 -6.474  3.067 -13.123 -15.023  2.220 -4.680 -14.077  0.597 -10.816 -3.515 -0.779 -14.356 -1.517 -4.619 
    ML   149   147 6   152     4     1     1  1395  3002 -10.726  -0.326  -2.318  -9.638                 -7.853  1.685 -8.646 -0.362 
    MR   150   147 6   152     4     1     1  1414  3022 -17.104  -0.000 -14.000 -13.061                  0.253 -11.711  1.323 -1.711 
     D   151   147 6   152     4     0     0  1404  3012 -17.086  -0.145 -14.783  -3.385                 
    IL   152   152 5   152     4     1     1  1304  2912  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     3     1     1  1413  3021  -0.017  -8.144  -6.992                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     64      - U - - -
    ML   154   153 6   156     3     1     2    67   157 -20.181  -0.000 -18.835                         -6.204  0.836 -7.275  1.134 
     D   155   153 6   156     3     0     0    65   155 -19.901  -0.750  -1.303                         
    IL   156   156 3   156     3     1     1    68   158  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     65      - U - - -
    ML   157   156 3   159     3     1     1    66   156 -20.423  -0.000 -19.077                         -14.386 -3.623 -6.344  1.966 
     D   158   156 3   159     3     0     0    64   154 -18.598  -0.917  -1.088                         
    IL   159   159 3   159     3     1     1    67   157  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     66      - g - - -
    ML   160   159 3   162     3     1     1    65   155 -20.502  -0.000 -19.156                         -0.361  0.108  0.220 -0.031 
     D   161   159 3   162     3     0     0    63   153 -17.510  -1.851  -0.468                         
    IL   162   162 3   162     3     1     1    66   156  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     67      - g - - -
    ML   163   162 3   165     3     1     1    64   154 -20.520  -0.000 -19.175                         -0.066  0.074  0.193 -0.235 
     D   164   162 3   165     3     0     0    62   152 -17.042  -0.335  -2.272                         
    IL   165   165 3   165     3     1     1    64   154  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     68      - a - - -
    ML   166   165 3   168     3     1     1    63   153  -5.248  -0.080  -5.185                          0.294 -0.260  0.196 -0.336 
     D   167   165 3   168     3     0     0    30   120 -14.771 -10.284  -0.001                         
    IL   168   168 3   168     3     1     1    80   170  -0.295  -5.492  -2.617                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     75      - A - - -
    ML   169   168 3   171     3     1     1     4    23 -20.483  -0.000 -19.137                          1.146 -15.414  0.833 -7.345 
     D   170   168 3   171     3     0     0     5    24 -17.856  -1.406  -0.683                         
    IL   171   171 3   171     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     76      - A - - -
    ML   172   171 3   174     2     1     1     1     1       *   0.000                                  1.231 -1.924 -1.885  0.161 
     D   173   171 3   174     2     0     0     0     0       *   0.000                                 
    IL   174   174 3   174     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   175   174 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S   176    63 1   177     3     0     9    60   106 -20.568  -0.006  -7.904                         
    IL   177   177 2   177     3     1    10    62   108  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    211      - u - - -
    ML   178   177 2   180     2     1     9    60   106  -2.607  -0.259                                 -1.617  0.589 -1.363  0.833 
     D   179   177 2   180     2     0     8    59   105 -12.398  -0.000                                 
    IL   180   180 3   180     2     1     9    60   106  -4.640  -0.059                                  0.000  0.000  0.000  0.000 
                                             [ BIF    49 ]      -      - - - - -
     B   181   180 3   182   214     0     8    59   105                                                 
                                             [ BEGL   50 ]      -      - - - - -
     S   182   181 1   183     4     0     0    30    50  -0.281 -15.290  -9.136  -2.512                 
                                             [ MATP   51 ]    214    238 G C - -
    MP   183   182 1   187     6     2     2    30    50 -20.148 -20.087  -0.000 -18.863 -19.143 -19.538 -14.111 -9.709 -13.929  1.197 -15.060 -11.175 -1.399 -14.619 -14.368  3.506 -11.802  0.336 -1.142 -11.673 -2.032 -7.866 
    ML   184   182 1   187     6     1     1    29    49  -7.066  -7.412  -0.597  -1.821  -7.262  -4.792 -0.354  0.848 -1.083 -0.080 
    MR   185   182 1   187     6     1     1    28    48 -12.727 -11.456  -2.574 -11.434  -1.751  -0.905  0.437 -1.184  1.106 -4.210 
     D   186   182 1   187     6     0     0    19    39 -21.940 -20.638 -12.343 -17.117 -17.134  -0.000 
    IL   187   187 5   187     6     1     1    30    50  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   188   188 6   188     5     1     1    30    49  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    215    237 c g - -
    MP   189   188 6   193     6     2     2    28    48 -20.148 -20.087  -0.019  -7.804  -8.621  -7.409 -14.445 -14.144 -14.445  1.030 -7.812 -15.288  2.539 -0.026 -14.303  1.803 -9.900 -2.000  1.643 -14.627 -1.758 -13.022 
    ML   190   188 6   193     6     1     1    27    47  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   191   188 6   193     6     1     1    27    47 -11.015  -9.744  -0.061  -9.722  -4.856  -7.936 -4.705 -4.290 -5.520  1.959 
     D   192   188 6   193     6     0     0    15    35 -21.947 -20.645 -16.443 -17.125 -17.142  -0.000 
    IL   193   193 5   193     6     1     1    28    48  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   194   194 6   194     5     1     1    28    47  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    216    236 C G - -
    MP   195   194 6   199     4     2     2    26    46  -0.726  -3.535  -1.732  -6.980                 -9.738 -10.998 -11.049  0.850 -4.668 -4.123  3.108 -9.160 -8.332  0.784 -5.288 -0.589  0.362 -12.025  0.826 -10.338 
    ML   196   194 6   199     4     1     1    25    45  -0.711  -4.256  -4.846  -1.727                 -6.984  1.331 -8.078  0.559 
    MR   197   194 6   199     4     1     1    18    38 -10.983  -7.064  -0.023  -6.940                  1.744 -1.019 -3.946 -3.425 
     D   198   194 6   199     4     0     0    15    34 -17.408  -8.924  -2.919  -0.208                 
    IL   199   199 5   199     4     1     1    25    44  -1.408  -0.719  -6.017 -14.708                  0.000  0.000  0.000  0.000 
    IR   200   200 6   200     3     1     1    21    40  -1.409  -0.707  -6.517                          0.000  0.000  0.000  0.000 
                                             [ MATL   54 ]    224      - G - - -
    ML   201   200 6   203     3     1     1    14    27 -20.292  -0.000 -18.946                         -2.148 -3.059  1.185  0.465 
     D   202   200 6   203     3     0     0    11    25 -19.464  -4.494  -0.066                         
    IL   203   203 3   203     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]    225      - u - - -
    ML   204   203 3   206     3     1     1    13    26 -20.306  -0.000 -12.595                         -0.242 -0.012 -2.446  0.985 
     D   205   203 3   206     3     0     0     8    24 -19.399  -9.398  -0.002                         
    IL   206   206 3   206     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    226      - A - - -
    ML   207   206 3   209     3     1     1    12    25  -3.472  -0.234  -4.072                          1.380 -0.907 -1.355 -1.083 
     D   208   206 3   209     3     0     0     8    21 -10.468 -10.753  -0.002                         
    IL   209   209 3   209     3     1     1    13    26  -2.047  -0.624  -3.198                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    230      - A - - -
    ML   210   209 3   212     2     1     1     1     1       *   0.000                                  1.328 -0.769 -0.930 -1.406 
     D   211   209 3   212     2     0     0     0     0       *   0.000                                 
    IL   212   212 3   212     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    58 ]      -      - - - - -
     E   213   212 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   59 ]      -      - - - - -
     S   214   181 1   215     3     0     6    47    92 -20.568  -0.044  -5.063                         
    IL   215   215 2   215     3     1     7    49    94  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    239      - G - - -
    ML   216   215 2   218     3     1     7    47    92  -2.020  -0.409 -19.178                         -1.035 -0.846  1.412 -1.767 
     D   217   215 2   218     3     0     3    46    91  -9.341  -0.003 -11.316                         
    IL   218   218 3   218     3     1     7    47    92  -5.666  -0.029 -15.927                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    242      - U - - -
    ML   219   218 3   221     5     1     6    46    91 -19.501  -0.000 -19.316 -19.528 -20.420         -6.966 -2.541 -2.108  1.843 
     D   220   218 3   221     5     0     0    44    89  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   221   221 3   221     5     1     1    46    91  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   62 ]    243    270 G C - -
    MP   222   221 3   226     6     2     5    45    90 -20.429  -6.456  -0.019 -19.145  -9.549 -14.817 -8.397 -6.850 -8.394  0.739 -15.341 -14.806 -0.188 -14.901 -14.649  3.288 -14.895  1.776 -4.755 -2.403 -8.681 -5.680 
    ML   223   221 3   226     6     1     1    43    88  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   224   221 3   226     6     1     1    42    88  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   225   221 3   226     6     0     0    40    86  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   226   226 5   226     6     1     1    44    89  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   227   227 6   227     5     1     4    44    89  -9.856  -0.002 -13.367 -11.535 -12.641          0.000  0.000  0.000  0.000 
                                             [ MATP   63 ]    244    268 c g - -
    MP   228   227 6   232     6     2     6    43    88 -20.427  -7.570  -0.016 -14.347  -7.496 -19.817 -14.722 -14.416 -14.721  0.760 -7.741 -8.408  2.991 -8.329 -14.581  1.442 -15.094  0.154  1.164 -7.446 -3.159 -2.684 
    ML   229   227 6   232     6     1     1    41    86  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   230   227 6   232     6     1     3    40    85 -12.325 -11.054  -6.140 -11.032  -0.025  -9.246 -6.485  1.985 -6.936 -5.576 
     D   231   227 6   232     6     0     0    40    85 -10.344  -9.042  -0.673  -5.521  -5.539  -1.614 
    IL   232   232 5   232     6     1     1    42    87  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   233   233 6   233     5     1     4    42    87  -8.750  -0.005 -12.261 -10.429 -11.535          0.000  0.000  0.000  0.000 
                                             [ MATP   64 ]    245    266 G C - -
    MP   234   233 6   238     6     2     7    41    86 -20.419 -20.358  -0.000 -19.135 -19.414 -19.809 -14.447 -13.112 -14.270  1.827 -15.229 -14.873  1.888 -14.900 -14.684  3.074 -14.941 -6.692 -2.193 -10.073 -3.371 -8.039 
    ML   235   233 6   238     6     1     1    39    85  -7.612  -7.959  -0.381  -2.367  -7.808  -5.338 -0.822 -1.904  1.464 -1.290 
    MR   236   233 6   238     6     1     2    39    84 -14.658 -13.387  -9.295 -13.365  -0.003 -11.578 -3.831  1.412 -6.826  0.334 
     D   237   233 6   238     6     0     0    37    82  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   238   238 5   238     6     1     1    40    85  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   239   239 6   239     5     1     1    40    85  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   65 ]    246    265 G C - -
    MP   240   239 6   244     6     2     5    39    84 -20.419 -20.358  -0.000 -19.135 -19.414 -16.568 -17.494 -7.376 -18.188  1.307 -7.306 -16.591 -3.253 -18.145 -16.304  3.741 -16.628 -10.779 -4.817 -16.876 -16.409 -16.851 
    ML   241   239 6   244     6     1     1    37    83  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   242   239 6   244     6     1     1    38    83 -14.658 -13.387  -9.295 -13.365  -0.022  -6.195 -8.588  1.714 -9.302 -0.485 
     D   243   239 6   244     6     0     0    36    82  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   244   244 5   244     6     1     1    38    83  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   245   245 6   245     5     1     1    38    83  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   66 ]    247    264 G C - -
    MP   246   245 6   250     4     2     3    37    82  -7.402  -6.745  -0.022 -18.270                 -18.318 -14.976 -20.505 -4.023 -19.968 -16.149 -14.277 -20.019 -16.343  3.993 -16.539 -6.120 -14.638 -16.613 -16.722 -19.528 
    ML   247   245 6   250     4     1     1    36    82  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   248   245 6   250     4     1     2    37    82  -0.006 -11.692  -9.560  -8.620                 -9.228  1.998 -9.790 -8.065 
     D   249   245 6   250     4     0     0    36    82  -6.915  -6.596  -4.612  -0.089                 
    IL   250   250 5   250     4     1     2    36    81 -10.224 -10.907  -0.002 -13.393                  0.000  0.000  0.000  0.000 
    IR   251   251 6   251     3     1     2    37    82  -1.285  -0.762 -11.975                          0.000  0.000  0.000  0.000 
                                             [ MATL   67 ]    249      - U - - -
    ML   252   251 6   254     3     1     1    34    80 -20.568  -0.043  -5.102                         -4.834 -7.350 -15.844  1.985 
     D   253   251 6   254     3     0     0    37    82  -8.941  -0.154  -3.333                         
    IL   254   254 3   254     3     1     1    38    84  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   68 ]    250      - U - - -
    ML   255   254 3   257     3     1     4    15    60 -20.525  -0.000 -19.180                         -14.487 -4.167 -5.359  1.971 
     D   256   254 3   257     3     0     0    42    88 -16.886 -12.399  -0.000                         
    IL   257   257 3   257     3     1     1    38    84  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   69 ]    251      - C - - -
    ML   258   257 3   260     3     1     3    14    59 -20.525  -0.000 -19.180                         -4.471  1.951 -4.688 -4.329 
     D   259   257 3   260     3     0     0    42    88 -16.886 -12.399  -0.000                         
    IL   260   260 3   260     3     1     1    38    84  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   70 ]    252      - G - - -
    ML   261   260 3   263     3     1     2    12    57 -20.525  -0.000 -19.180                          0.759 -3.739  1.133 -4.686 
     D   262   260 3   263     3     0     0    42    88 -16.886 -12.399  -0.000                         
    IL   263   263 3   263     3     1     1    38    84  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   71 ]    253      - A - - -
    ML   264   263 3   266     3     1     1     8    54 -20.525  -0.000 -19.180                          1.934 -4.686 -3.297 -4.686 
     D   265   263 3   266     3     0     0    42    88  -0.001 -12.399 -11.277                         
    IL   266   266 3   266     3     1     1    42    88  -0.586  -1.584 -14.445                          0.000  0.000  0.000  0.000 
                                             [ MATL   72 ]    260      - G - - -
    ML   267   266 3   269     3     1     1     4    23 -20.568  -0.000 -16.056                         -1.274 -1.505  1.377 -0.652 
     D   268   266 3   269     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   269   269 3   269     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   73 ]    261      - U - - -
    ML   270   269 3   272     2     1     1     1     1       *   0.000                                 -7.275 -1.543 -5.210  1.857 
     D   271   269 3   272     2     0     0     0     0       *   0.000                                 
    IL   272   272 3   272     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    74 ]      -      - - - - -
     E   273   272 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Leu
ACC   bact-Leu-r2-022416
LENG  85
MAXL  1360
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 16:58:49 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Leu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Leu-r2-022416.sto
NSEQ  23606
EFFN  19.386021
CKSUM 2560531045
STATS LOCAL MSV       -8.9497  0.71877
STATS LOCAL VITERBI   -9.7167  0.71877
STATS LOCAL FORWARD   -3.2698  0.71877
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50827  1.36936  1.24332  1.44386
          1.38629  1.38629  1.38629  1.38629
          0.01059  5.24625  5.24625  1.46634  0.26236  0.00000        *
      1   2.28829  2.71499  0.27009  2.67302      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01059  5.24625  5.24625  1.46634  0.26236  1.09861  0.40547
      2   2.29653  0.59069  1.63351  1.89574      2 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.02066  5.25856  4.18354  1.46634  0.26236  1.09861  0.40547
      3   1.92080  0.92029  1.11310  2.06699      3 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02519  4.29545  4.48782  0.97011  0.47649  1.59535  0.22670
      4   1.93916  1.65689  0.54473  2.45988      6 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01063  5.24248  5.24248  1.46634  0.26236  1.80201  0.18028
      5   1.14271  2.12067  0.84403  2.03164      7 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.01080  5.24457  5.20909  1.46634  0.26236  1.07159  0.41925
      6   1.33815  1.57951  1.28498  1.36673      8 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.03906  3.40664  5.26752  0.66910  0.71778  1.29062  0.32172
      7   1.71222  2.79648  0.41761  2.30367     12 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01358  5.27419  4.78393  1.46634  0.26236  0.70164  0.68473
      8   4.05949  3.82491  4.35553  0.05331     13 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01981  4.36645  4.97318  1.03134  0.44088  0.69967  0.68667
      9   1.54530  3.06614  0.37814  2.90010     18 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09651  5.31407  2.44094  1.46634  0.26236  0.90544  0.51813
     10   2.14330  2.86078  0.29159  2.54554     19 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02674  5.23026  3.86165  1.46634  0.26236  2.98023  0.05212
     11   3.01125  0.63573  2.54878  1.06990     20 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02402  4.54394  4.33492  0.82680  0.57527  3.11893  0.04521
     12   2.38717  2.50500  0.33665  2.18680     22 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01556  5.20676  4.60936  1.46634  0.26236  0.48860  0.95058
     13   1.48392  1.62607  0.88536  1.80798     23 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.07948  2.64226  5.25883  1.34807  0.30075  2.31255  0.10426
     14   0.06675  4.26629  4.34780  3.28072     32 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01028  5.27560  5.27560  1.46634  0.26236  1.76219  0.18834
     15   0.13382  3.78929  2.46859  4.02116     33 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01531  5.28015  4.59483  1.46634  0.26236  2.21841  0.11517
     16   2.99355  1.86588  3.83182  0.25688     34 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.23709  5.27566  1.58004  1.46634  0.26236  2.39908  0.09519
     17   2.28025  2.21620  3.77324  0.26691     35 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.07015  2.79118  5.05144  0.54558  0.86632  0.24704  1.51919
     18   4.14148  5.09051  0.04748  3.71668     39 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02192  4.12582  5.19816  0.85764  0.55193  1.58355  0.22972
     19   4.66210  6.05187  0.01634  5.42352     42 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01026  5.27767  5.27767  1.46634  0.26236  2.08519  0.13271
     20   2.43872  1.13906  3.63340  0.56884     43 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.16472  2.71249  2.45931  0.62116  0.77072  2.33193  0.10215
     21   0.20766  2.65760  3.27470  2.53105     48 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01222  5.19550  5.02045  1.46634  0.26236  0.43912  1.03452
     22   1.59034  3.58348  0.34589  2.80060     49 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.10505  5.27849  2.35790  1.46634  0.26236  1.31653  0.31206
     23   0.56260  2.38375  1.55610  2.06268     50 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.03076  3.69912  5.19476  0.40035  1.10893  2.97425  0.05244
     24   2.16213  0.39559  2.38447  2.12442     52 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01303  5.19664  4.90540  1.46634  0.26236  1.84946  0.17117
     25   1.16918  2.69858  0.58225  2.75772     53 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01269  5.21165  4.94008  1.46634  0.26236  3.14142  0.04418
     26   2.98308  0.31291  2.57032  1.95518     54 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.07549  5.20994  2.69938  1.46634  0.26236  0.15906  1.91692
     27   0.98144  2.99974  0.66357  2.80647     55 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.06856  3.70582  3.17769  0.38273  1.14569  1.69196  0.20354
     28   1.66320  0.70461  1.84949  1.83980     57 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.05115  3.81295  3.58333  0.43201  1.04754  3.03541  0.04925
     29   1.79419  1.09322  1.77754  1.11003     59 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.03298  5.20160  3.61442  1.46634  0.26236  3.21765  0.04087
     30   1.07372  2.29267  0.80872  2.19067     60 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.06601  5.17995  2.84298  1.46634  0.26236  3.20128  0.04156
     31   2.05592  2.32599  0.37780  2.41944     61 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.14036  4.01737  2.18076  0.56508  0.84006  3.63849  0.02664
     32   0.99124  1.26775  1.73726  1.76367     63 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.03833  5.01373  3.47515  1.46634  0.26236  1.31987  0.31084
     33   3.14349  0.88060  3.81200  0.65348     64 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01252  5.08008  5.08008  1.46634  0.26236  0.54903  0.86159
     34   3.84569  3.24794  4.18095  0.07851     65 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01080  5.22684  5.22684  1.46634  0.26236  0.69200  0.69429
     35   1.47450  1.40188  1.35109  1.32420     66 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01029  5.27494  5.27494  1.46634  0.26236  1.23023  0.34563
     36   1.35010  1.42260  1.36384  1.41049     67 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01017  5.28643  5.28643  1.46634  0.26236  0.44926  1.01639
     37   1.18340  1.59496  1.35761  1.45427     68 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.05959  3.56134  3.52502  1.50494  0.25107  1.43945  0.27057
     38   0.58661  4.62092  0.86505  4.34930     75 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01019  5.28500  5.28500  1.46634  0.26236  0.24583  1.52353
     39   0.65637  2.29411  2.30375  1.27106     76 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.35803  1.26295  4.01033  4.45881  0.01164  1.09861  0.40547
     40   1.93772  1.83528  1.11006  1.00278    202 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.14745  4.62471  2.06129  0.82165  0.57930  1.73862  0.19330
     41   2.62960  0.47716  2.02263  1.74272    204 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02071  4.21166  5.17206  0.64388  0.74497  1.86617  0.16808
     42   2.53505  0.78396  2.27852  1.01690    206 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01281  5.19273  4.93741  1.46634  0.26236  3.27992  0.03836
     43   1.22830  1.96984  0.94232  1.72594    207 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.02880  3.77981  5.19111  0.68671  0.69962  2.71831  0.06826
     44   1.97627  2.00824  0.62324  1.65557    210 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01540  5.19541  4.63145  1.46634  0.26236  0.07975  2.56848
     45   2.04267  1.05940  2.20260  0.88397    211 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.15649  2.67578  2.57696  0.19571  1.72737  1.29359  0.32060
     46   1.75784  2.84118  0.36814  2.56126    214 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.10632  5.23852  2.34802  1.46634  0.26236  2.84628  0.05981
     47   1.94020  0.97476  1.49651  1.36597    215 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01919  5.14425  4.32940  1.46634  0.26236  3.46799  0.03168
     48   1.98953  0.80980  1.75071  1.40796    216 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.78879  0.63206  4.26082  0.47437  0.97359  1.83401  0.17408
     49   2.18498  2.74597  0.65280  1.19485    224 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02074  5.15714  4.21554  1.46634  0.26236  2.68825  0.07042
     50   1.45796  1.43131  2.44905  0.81663    225 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01162  5.15525  5.15235  1.46634  0.26236  3.45950  0.03195
     51   0.55767  1.93248  2.13493  1.80533    226 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.10983  2.61202  3.48582  0.41362  1.08249  2.56287  0.08022
     52   0.59879  1.86738  1.94547  1.87682    230 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.93251  0.54382  3.65309  0.46341  0.99191  2.13455  0.12590
     53   1.85680  1.98796  0.63551  1.73053    236 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01185  5.13844  5.13009  1.46634  0.26236  2.84630  0.05981
     54   1.52108  1.60562  0.97994  1.58267    237 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01179  5.14479  5.13502  1.46634  0.26236  3.39402  0.03415
     55   2.87171  0.47774  2.56102  1.40246    238 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01245  5.14576  5.02779  1.46634  0.26236  0.23504  1.56321
     56   1.93525  2.03656  0.46744  2.31740    239 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.26052  1.49477  5.28883  0.06311  2.79430  0.27117  1.43752
     57   3.69122  2.86765  2.87455  0.14875    242 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00988  5.31581  5.31581  1.46634  0.26236  1.09861  0.40547
     58   1.92707  2.60807  0.32147  2.88834    243 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01111  5.31581  5.09403  1.46634  0.26236  1.09861  0.40547
     59   2.08970  0.83374  1.47156  1.54981    244 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01489  5.31459  4.61938  1.46634  0.26236  1.17054  0.37135
     60   1.53190  1.64623  0.64054  2.74742    245 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00994  5.30968  5.30968  1.46634  0.26236  1.44570  0.26864
     61   1.82836  3.55551  0.24634  3.53705    246 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00994  5.30968  5.30802  1.46634  0.26236  0.64453  0.74425
     62   4.11464  5.40704  0.02566  5.39944    247 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01518  4.59011  5.31572  0.78868  0.60595  1.10470  0.40243
     63   3.79893  3.97836  4.68486  0.05166    249 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.03646  5.31572  3.47738  1.46634  0.26236  1.08655  0.41155
     64   3.86996  3.39506  4.06029  0.07434    250 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01014  5.28950  5.28950  1.46634  0.26236  2.11458  0.12861
     65   4.01364  0.05831  4.26226  3.70975    251 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01014  5.28950  5.28950  1.46634  0.26236  2.11458  0.12861
     66   0.91171  3.35900  0.63849  3.34378    252 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01014  5.28950  5.28950  1.46634  0.26236  0.27624  1.42143
     67   0.08665  3.77233  3.33243  3.71746    253 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.03646  3.47747  5.31581  0.80539  0.59224  1.09861  0.40547
     68   2.00497  2.32994  0.50478  1.80549    260 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00989  5.31581  5.31345  1.46634  0.26236  1.09861  0.40547
     69   3.74348  2.42529  3.98473  0.14009    261 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01834  4.32955  5.29765  0.87124  0.54203  1.09704  0.40625
     70   5.33681  0.03336  5.28470  3.77527    264 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00988  5.31572  5.31572  1.46634  0.26236  1.08655  0.41155
     71   3.73709  0.26796  3.39736  1.72721    265 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00992  5.31581  5.30746  1.46634  0.26236  1.09861  0.40547
     72   3.01411  0.68367  1.58189  1.42478    266 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01465  4.64568  5.30970  0.82709  0.57505  1.09305  0.40826
     73   1.71894  1.75262  0.78150  1.66227    268 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.02019  4.19472  5.31578  0.55939  0.84761  1.09457  0.40749
     74   3.30333  0.55037  2.49544  1.19059    270 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02286  4.03554  5.31421  1.05177  0.42973  1.09861  0.40547
     75   2.78256  0.49452  2.68314  1.34743    274 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01433  4.67749  5.31421  0.85102  0.55683  1.09861  0.40547
     76   1.62325  1.33936  1.42494  1.20328    276 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.04895  3.51935  4.00879  0.49408  0.94195  1.09861  0.40547
     77   2.29630  0.90291  1.93481  1.05117    279 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01018  5.30000  5.27189  1.46634  0.26236  1.00020  0.45856
     78   2.65533  0.60161  1.57853  1.74001    280 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02378  5.30530  3.98802  1.46634  0.26236  0.56636  0.83838
     79   2.19923  1.17450  0.87700  1.80723    281 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01004  5.29978  5.29978  1.46634  0.26236  0.42900  1.05314
     80   2.16824  1.80713  0.49885  2.16922    282 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00990  5.31333  5.31333  1.46634  0.26236  1.09861  0.40547
     81   2.80486  0.37447  2.60542  1.72619    283 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01696  4.43220  5.31333  0.68976  0.69655  1.09861  0.40547
     82   0.17243  3.01545  2.87294  2.94079    285 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.14949  4.99889  2.02417  1.46634  0.26236  1.09861  0.40547
     83   4.89369  0.02715  5.25351  4.26401    286 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01554  4.86495  4.86495  1.46634  0.26236  3.07196  0.04744
     84   4.89369  0.02715  5.25351  4.26401    287 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01554  4.86495  4.86495  1.46634  0.26236  3.07196  0.04744
     85   0.02022  5.22987  4.83296  5.00567    288 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.00780  4.85721        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Lys
ACC      bact-Lys-r2-022416
STATES   242
NODES    65
CLEN     76
W        1251
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 17:25:06 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Lys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Lys-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Lys-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     12092
EFFN     12092.000000
CKSUM    3621582992
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -8.7860 0.71884
ECMLC    0.61295    -8.08736     1.96217     1600000      568033  0.002113
ECMGC    0.41263   -21.38061   -10.56158     1600000       34743  0.011513
ECMLI    0.57955    -8.13751     2.34795     1600000      522778  0.002295
ECMGI    0.40363   -20.10446    -9.18706     1600000       32797  0.012196
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1251  2679 -18.488 -19.733  -0.727  -1.338                 
    IL     1     1 2     1     4    11    33  1254  2682  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    12    35  1255  2683  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    280 - A - -
    MR     3     2 3     5     3    17    41  1254  2682 -19.170  -0.000 -17.487                          2.000 -14.795 -14.069 -14.126 
     D     4     2 3     5     3     9    29  1247  2675 -19.653 -14.830  -0.000                         
    IR     5     5 3     5     3    12    35  1254  2682  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    279 - C - -
    MR     6     5 3     8     3    16    40  1253  2681 -19.170  -0.000 -17.487                         -15.936  2.000 -17.195 -13.995 
     D     7     5 3     8     3     9    29  1247  2675 -19.653 -14.830  -0.000                         
    IR     8     8 3     8     3    12    35  1253  2681  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    278 - C - -
    MR     9     8 3    11     3    15    39  1252  2680 -19.170  -0.000 -17.487                         -15.936  2.000 -17.195 -13.995 
     D    10     8 3    11     3     9    29  1247  2675 -19.653  -0.456  -1.883                         
    IR    11    11 3    11     3    11    33  1251  2679  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    277 - A - -
    MR    12    11 3    14     5    14    38  1251  2679  -6.152  -0.157 -18.188  -3.487 -19.292          1.233 -2.387 -0.256 -0.687 
     D    13    11 3    14     5     9    27  1236  2664 -15.897 -11.251  -9.987 -14.954  -0.002         
    IR    14    14 3    14     5    15    40  1251  2679  -9.037  -0.004 -12.548 -10.716 -11.822          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    275 G C - -
    MP    15    14 3    19     6    16    39  1250  2678 -19.166  -6.925  -0.031 -10.319  -6.359 -18.556 -1.867 -11.777 -12.953 -1.219 -3.090 -13.550  0.836 -3.256 -3.803  3.621 -12.422 -0.700 -3.023 -12.809 -2.553 -11.916 
    ML    16    14 3    19     6    12    34  1248  2676  -7.674  -8.020  -2.735  -0.299  -7.870  -5.400 -0.918 -1.020 -1.614  1.407 
    MR    17    14 3    19     6    12    34  1247  2675 -17.224 -15.953  -1.230 -15.931  -0.873  -5.190 -2.946  1.897 -10.292 -2.786 
     D    18    14 3    19     6     9    27  1236  2664 -20.265 -18.963 -14.760 -15.442 -15.459  -0.000 
    IL    19    19 5    19     6    12    34  1249  2677  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    14    38  1249  2677  -8.143  -0.008 -11.654  -9.822 -10.928          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    273 c g - -
    MP    21    20 6    25     6    14    37  1248  2676 -19.207 -19.146  -0.030  -7.722  -6.550  -7.675 -9.914 -6.317 -13.016  1.200 -8.060 -7.672  2.739 -13.373 -12.286  2.303 -3.577 -1.054 -0.640 -2.981 -2.800 -0.766 
    ML    22    20 6    25     6    13    36  1247  2675 -10.029 -10.375  -0.064  -4.784 -10.225  -7.754 -1.213  1.718 -3.828 -2.262 
    MR    23    20 6    25     6    15    34  1244  2672 -16.648 -15.377  -3.298 -15.356  -0.155 -13.569 -3.439  0.962  0.185 -0.280 
     D    24    20 6    25     6     9    27  1236  2664 -20.294 -18.992  -7.177 -15.471 -15.489  -0.010 
    IL    25    25 5    25     6    12    33  1247  2675  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    12    34  1247  2675  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    272 G C - -
    MP    27    26 6    31     6    17    37  1246  2674 -19.189 -19.129  -0.019  -8.239  -6.675 -18.580 -13.155 -10.025 -5.997  0.932 -14.078 -13.571  1.082 -13.656 -3.954  3.344 -12.927 -1.249  0.291 -12.830 -3.437 -11.938 
    ML    28    26 6    31     6    14    35  1244  2672 -12.380 -12.726  -7.440  -0.010 -12.576 -10.105 -6.324 -8.083  1.991 -7.083 
    MR    29    26 6    31     6    14    33  1243  2671 -16.740  -3.058  -4.204 -15.447  -0.277 -13.661  0.587  1.011 -4.526 -1.187 
     D    30    26 6    31     6     9    27  1236  2664 -20.337 -19.035 -14.832 -15.514 -15.532  -0.000 
    IL    31    31 5    31     6    12    33  1245  2673  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    14    36  1245  2673  -8.174  -0.008 -11.685  -9.852 -10.958          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    270 C G - -
    MP    33    32 6    37     6    16    35  1244  2672  -7.278 -19.127  -0.013 -17.903  -8.496 -18.578 -13.764 -13.482 -13.732 -0.488 -7.311 -14.524  3.008 -13.234 -13.603  0.520 -14.094 -11.064  2.174 -13.932  0.361 -8.092 
    ML    34    32 6    37     6    14    34  1243  2671 -13.129 -13.475  -0.007  -7.883 -13.325 -10.854 -8.912 -7.942 -10.051  1.997 
    MR    35    32 6    37     6    13    31  1241  2669 -16.693 -15.422  -1.973 -15.401  -0.424 -13.614  0.925 -10.376  1.070 -10.273 
     D    36    32 6    37     6     9    27  1236  2664 -20.337 -19.035 -14.832 -15.514 -15.532  -0.000 
    IL    37    37 5    37     6    14    34  1243  2671  -8.698  -8.960  -0.009 -10.616 -11.392 -11.052  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    12    33  1243  2671  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      6    269 C G - -
    MP    39    38 6    43     6    15    33  1242  2670 -19.220 -19.159  -0.000 -17.935 -18.215 -18.610 -13.516 -13.217 -8.150 -1.040 -10.503 -14.360  3.246 -3.760 -13.374  1.407 -5.044 -5.223  1.538 -6.809 -1.623 -12.093 
    ML    40    38 6    43     6    11    31  1240  2668  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    11    30  1239  2667 -16.348 -15.077  -4.276 -15.055  -0.077 -13.269  0.416 -3.341  1.282 -2.887 
     D    42    38 6    43     6     9    27  1236  2664 -20.337 -19.035 -14.832 -15.514 -15.532  -0.000 
    IL    43    43 5    43     6    12    32  1241  2669  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    12    32  1241  2669  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      7    268 a u - -
    MP    45    44 6    49     6    13    31  1240  2668  -4.962 -19.163  -0.053 -17.939  -7.900 -18.614 -13.192 -9.666 -3.123  2.767 -14.080 -5.269  0.254 -13.682 -13.442  2.574 -13.693 -6.366 -0.040 -2.935 -0.345 -10.100 
    ML    46    44 6    49     6    11    29  1239  2667  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    10    29  1238  2666 -16.272 -15.001  -1.515 -14.980  -0.622 -13.193 -1.288  1.050  0.124 -1.216 
     D    48    44 6    49     6     9    27  1236  2664 -20.337 -19.035  -4.265 -15.514 -15.532  -0.077 
    IL    49    49 5    49     6    10    28  1238  2666 -11.032 -11.295  -1.979 -12.950 -13.727  -0.424  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    11    30  1239  2667  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      9    267 U A - -
    MP    51    50 6    55     4    11    29  1238  2666 -18.447 -18.654  -0.000 -13.320                 -1.449 -5.930 -13.100  0.335 -5.837 -13.944  1.027 -12.817 -2.698  1.496 -13.545 -3.165  3.128 -3.696 -1.857 -3.114 
    ML    52    50 6    55     4    10    28  1238  2665  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4     9    28  1237  2665 -13.857 -12.886  -1.778  -0.498                  1.399  0.357 -3.704 -7.474 
     D    54    50 6    55     4     9    27  1236  2664 -15.933 -15.614  -0.382  -2.105                 
    IL    55    55 5    55     4    10    29  1238  2666  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    10    29  1238  2666  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     10      - U - - -
    ML    57    56 6    59     3     9    27  1236  2664 -19.528  -0.000 -18.182                         -3.747 -12.536 -5.297  1.963 
     D    58    56 6    59     3     8    26  1235  2663 -16.731  -0.042  -5.132                         
    IL    59    59 3    59     3     9    28  1237  2665  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     11      - A - - -
    ML    60    59 3    62     2     8    26  1235  2663 -20.257  -0.000                                  1.910 -3.511 -3.092 -4.795 
     D    61    59 3    62     2     7    25  1234  2662 -10.273  -0.001                                 
    IL    62    62 3    62     2     8    27  1236  2664  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64     7    25  1234  2662                                                 
                                             [ BEGR   46 ]      -      - - - - -
     S    64    63 1    65     3     0     2   406   881 -19.603  -0.000 -18.257                         
    IL    65    65 2    65     3     1     2   409   884  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    184      - u - - -
    ML    66    65 2    68     3     1     2   406   881 -19.603  -0.328  -2.298                          0.093 -2.207  0.432  0.452 
     D    67    65 2    68     3     0     1   418   893  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     2   402   877  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    185      - G - - -
    ML    69    68 3    71     3     1     2   396   871  -2.279  -0.333 -17.929                         -1.898 -3.868  1.735 -1.583 
     D    70    68 3    71     3     0     1   425   899  -0.606  -1.693  -4.889                         
    IL    71    71 3    71     3     1     2   436   910  -0.056  -4.755  -9.912                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    242      - G - - -
    ML    72    71 3    74     3     1     1    54   102 -19.581  -0.175  -3.128                         -1.023 -6.525  1.797 -5.522 
     D    73    71 3    74     3     0     0    52   100 -14.962 -10.475  -0.001                         
    IL    74    74 3    74     3     1     2    55   103  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    243      - U - - -
    ML    75    74 3    77     3     1     3    53   101 -19.406  -0.000 -18.060                         -1.179 -1.903 -2.402  1.633 
     D    76    74 3    77     3     0     0    52   100 -18.052  -0.064  -4.531                         
    IL    77    77 3    77     3     1     1    53   101  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    244      - C - - -
    ML    78    77 3    80     5     1     2    52   100 -18.528  -0.000 -18.343 -18.556 -19.447         -2.212  1.293 -0.989 -0.268 
     D    79    77 3    80     5     0     0    48    96 -11.487  -1.463 -10.748  -0.717  -5.157         
    IL    80    80 3    80     5     1     1    52   100  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    245    266 G C - -
    MP    81    80 3    85     6     2     3    51    99 -19.459 -19.398  -0.002  -9.397 -18.455 -18.850 -13.424 -6.352 -13.243  0.141 -14.368 -13.839  1.727 -5.455 -4.969  3.341 -12.639 -0.061 -3.473 -13.097 -1.583 -12.208 
    ML    82    80 3    85     6     1     1    48    96  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    39    87 -12.689 -11.418  -7.327 -11.396  -0.030  -6.203  1.992 -7.584 -6.880 -7.028 
     D    84    80 3    85     6     0     0    40    88 -11.127  -9.825  -5.622  -6.304  -6.321  -0.069 
    IL    85    85 5    85     6     1     1    50    98  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    50    98  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    246    265 C G - -
    MP    87    86 6    91     6     2     2    49    97 -19.457 -19.396  -0.017 -18.173  -7.743  -7.185 -13.706 -9.421 -8.559  0.929 -4.953 -14.556  3.131 -5.077 -12.484  1.115 -11.371 -1.364  1.213 -4.529 -3.156 -2.038 
    ML    88    86 6    91     6     1     1    38    86 -10.989 -11.335  -6.050  -0.027 -11.185  -8.715  1.982 -6.305 -5.692 -5.901 
    MR    89    86 6    91     6     1     1    36    84 -12.671 -11.400  -7.309  -0.028  -6.512  -9.592 -6.101 -7.852  1.990 -6.859 
     D    90    86 6    91     6     0     0    36    84 -11.416 -10.114  -5.911  -6.593  -6.611  -0.057 
    IL    91    91 5    91     6     1     1    48    96  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    48    96  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    247    264 g c - -
    MP    93    92 6    97     6     2     3    47    95  -4.766 -19.379  -0.054 -18.156 -18.436 -18.831 -3.619 -2.169 -13.222  1.969 -14.352 -13.817 -0.309 -10.477 -5.149  2.828 -12.620  1.363  0.340 -13.076 -9.019 -8.411 
    ML    94    92 6    97     6     1     1    32    80 -12.654 -13.001  -7.715  -0.009 -12.850 -10.380  1.464 -6.680  0.287 -6.589 
    MR    95    92 6    97     6     1     1    31    79 -13.143 -11.872  -7.781 -11.851  -0.009 -10.064 -8.082 -7.250 -9.121  1.996 
     D    96    92 6    97     6     0     0    24    72 -16.343 -15.041 -10.838 -11.520 -11.538  -0.002 
    IL    97    97 5    97     6     1     2    53   101  -0.554 -13.355  -1.649 -15.010 -15.786 -15.447  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    21    37  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    252    263 G C - -
    MP    99    98 6   103     6     2     3    17    35 -19.440  -7.513  -0.008 -18.156 -18.436 -18.831 -16.121 -13.676 -16.488 -0.393 -17.338 -15.018 -2.180 -16.961 -12.998  3.854 -3.618 -2.822 -1.585 -11.033 -14.319 -15.440 
    ML   100    98 6   103     6     1     1    19    38 -12.654 -13.001  -0.010  -7.409 -12.850 -10.380 -6.573 -8.339  1.993 -7.334 
    MR   101    98 6   103     6     1     1    19    38 -13.143 -11.872  -7.781 -11.851  -6.984  -0.019 -8.082 -7.250 -9.121  1.996 
     D   102    98 6   103     6     0     0    17    35 -16.343 -15.041 -10.838 -11.520 -11.538  -0.002 
    IL   103   103 5   103     6     1     1    22    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    18    36  -7.836  -0.010 -11.347  -9.514 -10.620          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    253    261 G C - -
    MP   105   104 6   109     4     2     2    14    33 -18.677 -18.884  -0.003  -8.958                 -16.191 -14.074 -16.668 -4.648 -18.332 -16.009 -13.299 -16.665 -4.963  3.985 -15.724 -4.171 -13.436 -16.130 -15.420 -4.924 
    ML   106   104 6   109     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0    16    35 -12.493 -12.174 -10.190  -0.002                 
    IL   109   109 5   109     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    254      - U - - -
    ML   111   110 6   113     3     1     1    12    30 -19.583  -0.002  -9.382                         -6.545 -13.364 -7.072  1.993 
     D   112   110 6   113     3     0     0    13    31 -14.831  -8.018  -0.006                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    255      - U - - -
    ML   114   113 3   116     3     1     2    11    29 -19.581  -0.000 -18.235                         -7.446 -7.087 -7.174  1.993 
     D   115   113 3   116     3     0     0    12    30 -14.974  -0.776  -1.266                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    256      - C - - -
    ML   117   116 3   119     3     1     2     9    28 -19.594  -0.000 -18.248                         -5.134  1.963 -5.797 -4.196 
     D   118   116 3   119     3     0     0    11    30 -13.711  -9.224  -0.003                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    257      - G - - -
    ML   120   119 3   122     3     1     2     8    27 -19.594  -0.000 -18.248                         -1.274 -5.789  1.825 -5.305 
     D   121   119 3   122     3     0     0    10    29 -13.711  -0.392  -2.072                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    258      - A - - -
    ML   123   122 3   125     3     1     2     7    25 -19.601  -0.000 -18.255                          1.971 -5.079 -5.121 -5.648 
     D   124   122 3   125     3     0     0    11    29 -11.650  -7.163  -0.011                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    259      - G - - -
    ML   126   125 3   128     3     1     1     5    23 -19.601  -0.005  -8.240                          0.266 -2.240  1.040 -0.917 
     D   127   125 3   128     3     0     0     9    28 -11.650  -0.023  -6.042                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    260      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -4.056 -1.154 -2.123  1.705 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     0     8  1202  2630   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   185     0     8  1202  2630                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     1  1183  2611  -0.023  -7.160  -7.753  -7.820                 
                                             [ MATP   18 ]     12    137 G C - -
    MP   136   135 1   140     6     2     3  1183  2611 -19.441 -19.380  -0.028  -7.742  -6.119 -18.831 -4.000 -4.084 -16.550  0.984 -17.658 -15.338 -2.676 -16.828 -15.180  3.707 -7.332 -0.584 -12.769 -6.868 -14.664 -15.372 
    ML   137   135 1   140     6     1     2  1179  2607 -13.190 -13.537  -8.251  -0.006 -13.386 -10.916 -9.007 -8.021 -10.158  1.998 
    MR   138   135 1   140     6     1     1  1179  2607 -13.139 -11.868  -4.139 -11.846  -0.390  -2.480 -7.390  1.992 -7.861 -6.421 
     D   139   135 1   140     6     0     0  1178  2606 -15.680 -14.378 -10.175  -0.014 -10.875  -6.950 
    IL   140   140 5   140     6     1     1  1182  2610  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1  1182  2610  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     13    136 C G - -
    MP   142   141 6   146     6     2     2  1181  2609 -19.413 -19.353  -0.007  -9.836  -9.415  -8.997 -16.193 -16.327 -5.983 -2.580 -3.266 -15.854  3.742 -14.927 -15.694 -6.185 -15.871 -3.102  1.020 -16.095 -8.674 -2.522 
    ML   143   141 6   146     6     1     1  1178  2606 -14.379 -14.725  -9.440  -0.837 -14.575  -1.189 -0.027  0.668  0.508 -7.030 
    MR   144   141 6   146     6     1     1  1178  2606 -15.060 -13.789  -6.019 -13.767  -1.168  -0.891  0.747  0.507 -0.159 -7.620 
     D   145   141 6   146     6     0     0  1176  2604 -13.340 -12.038  -7.835  -8.517  -8.535  -0.015 
    IL   146   146 5   146     6     1     1  1180  2608  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1  1180  2608  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     14    135 U A - -
    MP   148   147 6   152     6     2     5  1179  2607 -19.407  -4.960  -0.047 -18.123 -18.403 -18.798 -16.255 -16.022 -15.734 -2.097 -14.268 -16.058 -1.362 -15.080 -4.909 -1.628 -15.962 -6.192  3.828 -16.312 -0.319 -14.588 
    ML   149   147 6   152     6     1     1  1178  2606 -13.706 -14.052  -1.136  -1.289 -13.902  -2.884 -0.127  0.628 -1.215  0.148 
    MR   150   147 6   152     6     1     2  1178  2606 -14.133 -12.862  -1.031 -12.840  -0.972 -11.054 -0.051 -6.496 -7.456  1.594 
     D   151   147 6   152     6     0     0  1176  2604 -17.798 -16.497 -12.294  -0.759 -12.993  -1.291 
    IL   152   152 5   152     6     1     1  1178  2606  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     4  1178  2606 -10.328  -0.002 -13.839 -12.007 -13.113          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     15    133 C G - -
    MP   154   153 6   158     4     2     3  1177  2605 -18.651 -18.858  -0.000 -17.272                 -6.371 -16.751 -15.797 -5.065 -14.149 -15.943  3.921 -2.446 -4.376 -12.963 -16.020 -5.834 -3.393 -16.314 -1.598 -2.839 
    ML   155   153 6   158     4     1     1  1177  2605 -11.423  -0.525  -2.814  -2.624                  1.522  0.161 -8.030 -7.282 
    MR   156   153 6   158     4     1     1  1177  2605 -11.193  -0.328  -8.090  -2.327                 -6.553 -8.318  1.993 -7.314 
     D   157   153 6   158     4     0     0  1174  2602 -12.160 -11.841  -1.143  -0.871                 
    IL   158   158 5   158     4     1     1  1177  2605  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     1  1176  2604  -8.219  -0.006 -10.919                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     16      - A - - -
    ML   160   159 6   162     3     1     1  1175  2603 -19.591  -0.056  -4.723                          1.956 -5.044 -4.038 -5.145 
     D   161   159 6   162     3     0     0  1174  2601 -14.149  -0.605  -1.547                         
    IL   162   162 3   162     3     1     1  1176  2604  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     17      - G - - -
    ML   163   162 3   165     3     1     1  1174  2602 -19.544  -0.000 -12.024                         -0.693 -4.418  1.577 -1.508 
     D   164   162 3   165     3     0     0  1172  2600 -16.395 -11.908  -0.000                         
    IL   165   165 3   165     3     1     1  1175  2603  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     18      - U - - -
    ML   166   165 3   168     3     1     1  1173  2601 -19.543  -0.293  -2.442                         -3.053  0.467 -3.861  1.280 
     D   167   165 3   168     3     0     0  1172  2600 -16.403 -11.916  -0.000                         
    IL   168   168 3   168     3     1     1  1174  2602  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     19      - U - - -
    ML   169   168 3   171     3     1     2  1172  2600  -2.317  -0.323 -17.904                         -1.088 -0.639 -12.880  1.530 
     D   170   168 3   171     3     0     0  1172  2600 -18.819  -0.050  -4.887                         
    IL   171   171 3   171     3     1     1  1185  2613  -2.846  -0.422  -3.128                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     22      - G - - -
    ML   172   171 3   174     3     1     1  1167  2595  -1.617  -0.570 -11.486                         -6.763 -15.021  1.930 -2.483 
     D   173   171 3   174     3     0     0  1247  2675  -0.111 -11.389  -3.765                         
    IL   174   174 3   174     3     1     1  1253  2681  -0.019  -6.300 -12.973                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]    123      - G - - -
    ML   175   174 3   177     3     1     1    19    38 -19.595  -0.000 -18.249                         -5.199 -5.653  1.983 -11.597 
     D   176   174 3   177     3     0     0    18    37 -13.578  -3.984  -0.094                         
    IL   177   177 3   177     3     1     1    21    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]    124      - U - - -
    ML   178   177 3   180     3     1     1    18    37  -1.894  -0.452 -18.249                         -0.917 -0.281 -2.335  1.292 
     D   179   177 3   180     3     0     0    18    37  -0.699  -4.503  -1.557                         
    IL   180   180 3   180     3     1     1    18    37  -1.387  -0.705  -7.971                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]    131      - A - - -
    ML   181   180 3   183     2     1     1     1     1       *   0.000                                  1.923 -4.298 -3.092 -4.649 
     D   182   180 3   183     2     0     0     0     0       *   0.000                                 
    IL   183   183 3   183     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    30 ]      -      - - - - -
     E   184   183 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   31 ]      -      - - - - -
     S   185   134 1   186     3     0     0   154   329 -19.603  -0.034  -5.423                         
    IL   186   186 2   186     3     1     1   156   331  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]    138      - A - - -
    ML   187   186 2   189     5     1     1   154   330 -18.502  -0.003 -18.317 -11.656  -9.418          1.430 -4.845  0.309 -4.939 
     D   188   186 2   189     5     0     0   148   323 -13.559  -5.981  -1.017  -1.080  -5.901         
    IL   189   189 3   189     5     1     1   154   329  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]    139    183 a u - -
    MP   190   189 3   194     6     2     3   153   329 -19.428 -19.367  -0.006  -7.858 -18.424 -18.819 -10.604 -4.189 -6.635  2.386 -4.000 -11.653  1.009 -3.304 -0.580  1.341 -2.798  1.631  0.673 -2.184 -2.462 -3.464 
    ML   191   189 3   194     6     1     1   148   323 -13.910 -14.256  -8.970  -0.395 -14.106  -2.075 -10.045 -8.899 -11.342  1.999 
    MR   192   189 3   194     6     1     1   149   324 -14.420 -13.149  -2.791 -13.128  -0.271  -5.228  1.633 -7.051 -7.593 -0.174 
     D   193   189 3   194     6     0     0   140   315 -14.410 -13.108  -8.905  -9.588  -9.605  -0.007 
    IL   194   194 5   194     6     1     1   152   327  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1   152   327  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    140    182 C G - -
    MP   196   195 6   200     6     2     3   151   327 -19.424 -19.363  -0.000 -18.140 -18.420 -18.815 -5.538 -1.659 -6.861  0.089 -9.561 -11.163  3.012 -13.230 -6.974 -2.863 -5.192 -1.485  2.545 -13.884 -2.875 -5.759 
    ML   197   195 6   200     6     1     1   148   323 -14.080 -14.426  -9.140  -0.003 -14.276 -11.805 -7.966 -9.034  1.558  0.069 
    MR   198   195 6   200     6     1     1   147   322 -14.154 -12.883  -8.791 -12.861  -0.151  -3.365 -7.346 -8.890  1.857 -1.438 
     D   199   195 6   200     6     0     0   140   315 -15.814 -14.512 -10.309 -10.992 -11.009  -0.003 
    IL   200   200 5   200     6     1     1   150   326  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1   150   325  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    141    181 u a - -
    MP   202   201 6   206     6     2     3   149   325  -3.967 -19.363  -0.095 -18.140 -18.420 -18.815 -13.720 -13.417 -13.720  1.516 -10.914 -14.563  1.507 -13.241 -13.579  1.282 -14.092 -1.417  2.774 -11.703 -0.894 -3.147 
    ML   203   201 6   206     6     1     1   147   322 -14.080 -14.426  -9.140  -0.003 -14.276 -11.805 -9.199  1.998 -9.760 -8.040 
    MR   204   201 6   206     6     1     1   147   322 -14.007 -12.736  -8.645 -12.714  -0.005 -10.928 -9.426 -8.372 -10.635  1.998 
     D   205   201 6   206     6     0     0   140   315 -16.061 -14.760 -10.557  -1.080 -11.256  -0.927 
    IL   206   206 5   206     6     1     1   149   324 -12.226  -0.086  -4.119 -14.144 -14.921 -14.581  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1   148   323 -11.252  -0.001 -14.763 -12.931 -14.036          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    143    179 G C - -
    MP   208   207 6   212     6     2     3   147   322 -16.165 -19.363  -0.012  -6.902 -18.420 -18.815 -13.388 -11.532 -13.206  0.410 -14.337 -10.670  0.118 -13.896 -3.062  3.269 -6.291  1.866 -4.421 -3.936 -11.411 -4.188 
    ML   209   207 6   212     6     1     1   146   321 -14.355 -14.702  -0.450  -1.901 -14.551 -12.081  1.998 -9.652 -8.887 -8.997 
    MR   210   207 6   212     6     1     1   146   321 -14.007 -12.736  -8.645 -12.714  -0.005 -10.928 -9.426 -8.372 -10.635  1.998 
     D   211   207 6   212     6     0     0   122   297 -15.138 -13.836  -9.634 -10.316 -10.333  -0.004 
    IL   212   212 5   212     6     1     1   146   321  -2.784  -3.047  -0.633  -4.702  -5.479  -5.139  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     5     1     1   146   321  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    145    178 A U - -
    MP   214   213 6   218     4     2     2   145   320 -18.659  -4.884  -0.086  -5.393                 -13.396 -4.674 -5.316  3.249 -14.339 -13.812  0.926 -12.583 -0.628  1.304 -3.916  0.262 -4.182 -13.070 -3.604 -7.142 
    ML   215   213 6   218     4     1     1   144   320 -11.090 -11.273  -0.003 -10.002                 -8.058  0.172 -8.914  1.520 
    MR   216   213 6   218     4     1     1   145   320 -12.032  -0.009  -8.928  -7.989                 -8.434  1.996 -8.950 -7.363 
     D   217   213 6   218     4     0     0   122   297 -10.562 -10.243  -3.308  -0.156                 
    IL   218   218 5   218     4     1     1   144   320  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   219   219 6   219     3     1     1   144   319  -9.712  -0.129  -3.567                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]    146      - C - - -
    ML   220   219 6   222     3     1     1   143   319 -19.560  -0.050  -4.867                         -5.853  1.325 -2.995  0.434 
     D   221   219 6   222     3     0     0    69   244 -15.938 -11.451  -0.001                         
    IL   222   222 3   222     3     1     1   144   319  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    147      - U - - -
    ML   223   222 3   225     3     1     2   143   318  -2.448  -0.292 -18.164                         -2.053 -3.847 -3.929  1.858 
     D   224   222 3   225     3     0     0    46   221 -17.027  -0.676  -1.418                         
    IL   225   225 3   225     3     1     2   158   333  -0.152  -3.325 -17.781                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    171      - u - - -
    ML   226   225 3   228     3     1     1     9    27 -19.569  -0.000 -18.223                         -0.500 -0.125 -0.506  0.741 
     D   227   225 3   228     3     0     0    10    28 -15.610  -0.025  -5.863                         
    IL   228   228 3   228     3     1     1    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    172      - u - - -
    ML   229   228 3   231     3     1     1     8    26 -19.603  -0.633  -1.493                         -0.102 -0.003 -0.200  0.263 
     D   230   228 3   231     3     0     0    13    31  -9.785  -5.298  -0.039                         
    IL   231   231 3   231     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    173      - u - - -
    ML   232   231 3   234     3     1     1     6    25  -5.258  -0.038 -17.623                          0.132 -0.205 -0.179  0.206 
     D   233   231 3   234     3     0     0     4    22 -19.530 -15.043  -0.000                         
    IL   234   234 3   234     3     1     1     6    25  -8.415  -0.005 -11.115                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    175      - A - - -
    ML   235   234 3   237     3     1     1     5    24 -18.969  -0.000 -17.623                          1.984 -6.537 -5.924 -5.808 
     D   236   234 3   237     3     0     0     4    22 -19.530 -15.043  -0.000                         
    IL   237   237 3   237     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    176      - A - - -
    ML   238   237 3   240     2     1     1     1     1       *   0.000                                  1.914 -3.334 -4.083 -3.768 
     D   239   237 3   240     2     0     0     0     0       *   0.000                                 
    IL   240   240 3   240     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    45 ]      -      - - - - -
     E   241   240 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Lys
ACC   bact-Lys-r2-022416
LENG  76
MAXL  1233
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 17:25:07 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Lys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Lys-r2-022416.sto
NSEQ  12092
EFFN  17.594688
CKSUM 3621582992
STATS LOCAL MSV       -8.6769  0.71884
STATS LOCAL VITERBI   -9.4364  0.71884
STATS LOCAL FORWARD   -3.4713  0.71884
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46800  1.38651  1.28100  1.41919
          1.38629  1.38629  1.38629  1.38629
          0.03323  5.05662  3.63739  1.46634  0.26236  0.00000        *
      1   2.11829  2.09079  0.38211  2.60705      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02372  5.03647  4.07806  1.46634  0.26236  1.14547  0.38283
      2   1.74548  1.12691  1.12075  1.74085      2 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.02641  5.06150  3.92586  1.46634  0.26236  1.91552  0.15931
      3   1.82730  2.06785  0.50054  2.23970      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02137  5.05443  4.21592  1.46634  0.26236  2.18646  0.11914
      4   2.46172  0.82717  2.03718  1.05833      4 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02081  4.43381  4.74091  0.86142  0.54916  1.16621  0.37330
      5   2.53538  0.71321  1.71435  1.38382      6 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.01267  5.06838  5.06838  1.46634  0.26236  2.12876  0.12668
      6   1.10483  2.24206  0.86094  1.96805      7 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.02343  4.32212  4.61668  0.77332  0.61893  1.09207  0.40875
      7   1.84086  1.62345  1.56733  0.83126      9 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.03331  5.08751  3.62747  1.46634  0.26236  1.29788  0.31898
      8   3.29025  3.62623  3.95196  0.08673     10 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01143  5.17017  5.17017  1.46634  0.26236  0.26757  1.44917
      9   0.11101  3.33820  3.18478  3.56912     11 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01774  5.21490  4.41030  1.46634  0.26236  1.17329  0.37012
     10   1.82237  3.06921  0.29664  3.02434     12 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02379  5.20816  4.01507  1.46634  0.26236  0.93335  0.49961
     11   2.94672  0.37451  2.75219  1.62926     13 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02051  5.19970  4.21450  1.46634  0.26236  1.75302  0.19025
     12   3.30259  2.36680  3.00162  0.19879     14 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01244  5.19062  4.99107  1.46634  0.26236  0.75360  0.63614
     13   3.85238  0.12312  3.69122  2.66391     15 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01333  5.20378  4.86043  1.46634  0.26236  0.82905  0.57352
     14   0.06544  3.98995  3.67166  3.94200     16 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04525  5.20866  3.25006  1.46634  0.26236  0.83042  0.57247
     15   1.81508  3.31258  0.35540  2.30402     17 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01153  5.17991  5.14370  1.46634  0.26236  2.25752  0.11050
     16   2.73477  1.11958  3.32564  0.55735     18 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.18930  5.17971  1.79076  1.46634  0.26236  2.26137  0.11005
     17   2.05630  1.81741  3.49978  0.38651     19 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.18808  1.80337  5.00391  0.17696  1.81902  0.06297  2.79635
     18   4.16418  5.14053  0.06294  3.22881     22 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.37660  1.17741  5.16134  4.34673  0.01303  1.20397  0.35667
     19   4.18956  4.93201  0.02917  5.05430    123 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01094  5.21406  5.21406  1.46634  0.26236  1.16455  0.37406
     20   1.79392  1.57795  2.53524  0.60138    124 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.28752  1.40877  5.21437  0.49303  0.94360  1.03650  0.43803
     21   0.09927  3.60524  3.20638  3.61866    131 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02548  4.82766  4.06543  1.05184  0.42970  1.10326  0.40315
     22   3.12402  3.96172  0.10539  3.29646    133 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.05371  3.41002  3.95029  0.30481  1.33660  1.66057  0.21076
     23   0.26665  3.14901  1.92575  3.09234    135 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01121  5.18996  5.18996  1.46634  0.26236  0.94051  0.49500
     24   1.74961  2.99112  0.35810  2.56491    136 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01108  5.20122  5.20122  1.46634  0.26236  1.11418  0.39777
     25   3.25444  0.35867  2.90351  1.57040    137 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03222  5.20606  3.64125  1.46634  0.26236  0.53141  0.88619
     26   0.41935  3.75000  1.23020  3.62035    138 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01272  5.19543  4.94843  1.46634  0.26236  0.83996  0.56515
     27   1.28843  1.65704  1.16727  1.50336    139 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01352  5.20451  4.83563  1.46634  0.26236  1.40161  0.28263
     28   2.16298  0.83444  2.32132  1.04198    140 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01106  5.20351  5.20351  1.46634  0.26236  1.67076  0.20838
     29   1.76101  1.45679  1.66973  0.89931    141 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.06883  2.79657  5.20351  0.17136  1.84846  1.30187  0.31749
     30   1.97826  2.48479  0.32649  2.86661    143 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01104  5.20404  5.20596  1.46387  0.26310  1.58311  0.22984
     31   0.84543  1.98061  1.07353  2.39861    145 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.03537  5.20596  3.53133  1.46634  0.26236  0.69595  0.69035
     32   3.09184  0.53996  3.14250  1.11281    146 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.04208  5.18988  3.33449  1.46634  0.26236  2.05139  0.13760
     33   2.66998  3.18700  3.57006  0.14932    147 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.18833  1.79629  5.15936  2.29326  0.10640  0.58091  0.81959
     34   1.52345  1.51355  1.72815  0.95633    171 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01115  5.19530  5.19530  1.46634  0.26236  0.36099  1.19398
     35   1.36112  1.45991  1.57608  1.18880    172 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.39130  5.21583  1.14448  1.46634  0.26236  1.11899  0.39543
     36   1.24826  1.57115  1.57797  1.20800    173 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.03811  3.52376  4.84046  0.47026  0.98041  4.10591  0.01661
     37   0.04096  4.48330  4.17649  4.30624    175 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01593  4.84046  4.84046  1.46634  0.26236  4.10591  0.01661
     38   0.12996  3.14052  3.32402  3.15578    176 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.07747  2.79368  4.31645  0.24088  1.54148  0.06471  2.76999
     39   2.40411  1.36188  1.84275  0.70300    178 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.02154  5.20255  4.14703  1.46634  0.26236  0.86181  0.54887
     40   3.10352  0.57657  2.37527  1.20298    179 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.06573  2.84570  5.19949  0.18025  1.80216  1.79936  0.18081
     41   1.02874  1.82375  1.29455  1.57454    181 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.01110  5.19950  5.19950  1.46634  0.26236  1.66081  0.21070
     42   1.12896  2.50911  0.76747  2.03179    182 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01109  5.20032  5.20032  1.46634  0.26236  1.22606  0.34735
     43   1.61877  1.68430  1.48986  0.93935    183 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01105  5.20434  5.20434  1.46634  0.26236  0.48955  0.94908
     44   1.27812  2.32085  1.22282  1.11215    184 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.07499  5.21617  2.70571  1.46634  0.26236  1.09861  0.40547
     45   2.29023  3.19534  0.27053  2.35567    185 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.34385  1.25463  5.15280  3.24010  0.03995  0.24500  1.52651
     46   2.08875  4.07158  0.18089  3.70585    242 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.12549  5.21012  2.18502  1.46634  0.26236  1.41332  0.27883
     47   2.06375  2.40791  2.75050  0.32972    243 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01231  5.09694  5.09694  1.46634  0.26236  0.13011  2.10375
     48   2.32745  0.60533  2.10867  1.44749    244 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01097  5.21131  5.21131  1.46634  0.26236  1.08014  0.41483
     49   2.07443  1.76517  0.45468  2.68001    245 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01095  5.21306  5.21306  1.46634  0.26236  1.27271  0.32860
     50   1.99266  0.77697  1.73250  1.48268    246 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.02126  5.21307  4.16122  1.46634  0.26236  0.84086  0.56447
     51   1.41468  2.60229  0.53732  2.31688    247 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04411  3.27896  5.20584  1.17849  0.36780  1.58787  0.22861
     52   2.39981  3.28381  0.19210  3.06709    252 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01103  5.20584  5.20584  1.46634  0.26236  1.58787  0.22861
     53   3.51899  4.78092  0.05105  4.44402    253 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01281  5.20584  4.92703  1.46634  0.26236  1.58787  0.22861
     54   3.88302  3.86527  4.36852  0.05574    254 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01238  5.20407  4.98947  1.46634  0.26236  1.64468  0.21452
     55   3.94116  3.80924  4.38635  0.05555    255 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01106  5.20279  5.20279  1.46634  0.26236  0.80678  0.59112
     56   4.18233  0.05226  4.53041  3.69361    256 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01098  5.21064  5.21064  1.46634  0.26236  1.39035  0.28633
     57   2.21443  3.96049  0.16778  3.64237    257 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01098  5.21064  5.21064  1.46634  0.26236  0.81548  0.58416
     58   0.04771  4.19459  4.09294  4.21161    258 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01093  5.21487  5.21487  1.46634  0.26236  1.17538  0.36918
     59   1.24127  2.48804  0.76788  1.80841    259 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01388  5.21487  4.78619  1.46634  0.26236  0.96078  0.48223
     60   3.16916  2.17578  2.82573  0.24185    260 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02142  5.21326  4.15085  1.46634  0.26236  0.83410  0.56963
     61   4.54467  0.06742  4.58065  3.11612    261 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02024  4.57800  4.62952  0.85750  0.55203  1.02635  0.44365
     62   3.23163  0.22641  3.06073  2.15191    263 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01103  5.20569  5.20569  1.46634  0.26236  1.59320  0.22725
     63   2.39877  0.75167  2.47854  1.03923    264 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01103  5.20569  5.20569  1.46634  0.26236  0.61876  0.77352
     64   1.66879  1.89225  0.72534  1.73367    265 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01093  5.21470  5.21470  1.46634  0.26236  0.96461  0.47987
     65   3.07987  0.55594  1.64805  1.67092    266 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03362  5.11863  3.60896  1.46634  0.26236  1.08315  0.41329
     66   0.89984  1.68208  1.45730  1.74573    267 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.01645  5.09571  4.58627  1.46634  0.26236  0.41851  1.07301
     67   2.35074  0.91421  1.89296  1.04061    268 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01213  5.11168  5.11168  1.46634  0.26236  1.35991  0.29663
     68   1.53585  1.80855  0.65496  2.28895    269 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01877  5.11168  4.37627  1.46634  0.26236  1.35991  0.29663
     69   1.28489  2.14342  0.68735  2.27146    270 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01904  4.35862  5.10511  0.77467  0.61777  1.23870  0.34215
     70   2.29223  0.59350  1.96105  1.58058    272 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01355  5.10770  4.90488  1.46634  0.26236  0.67664  0.70994
     71   2.06119  1.23039  1.05873  1.45404    273 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01872  4.37895  5.11423  0.78217  0.61141  0.86429  0.54706
     72   2.60097  0.46061  2.04940  1.79522    275 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02449  4.00639  5.11697  0.56457  0.84073  1.09861  0.40547
     73   0.66584  2.40271  1.60883  1.63188    277 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.15941  4.93038  1.96516  1.46634  0.26236  1.09861  0.40547
     74   4.81586  0.02937  5.18582  4.18305    278 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01680  4.78777  4.78777  1.46634  0.26236  3.06334  0.04786
     75   4.81586  0.02937  5.18582  4.18305    279 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01680  4.78777  4.78777  1.46634  0.26236  3.06334  0.04786
     76   0.02219  5.13378  4.74090  4.91736    280 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.00844  4.77940        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Met
ACC      bact-Met-r2-022416
STATES   245
NODES    66
CLEN     77
W        290
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 18:39:22 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Met-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Met-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Met-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     5196
EFFN     5196.000000
CKSUM    3113436217
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -8.8081 0.71936
ECMLC    0.68093    -7.96826     1.35595     1600000      686414  0.001748
ECMGC    0.36348   -31.99785   -19.87844     1600000       32748  0.012214
ECMLI    0.61169    -8.63241     1.61665     1600000      633719  0.001894
ECMGI    0.36268   -29.96360   -17.91553     1600000       31606  0.012656
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1   290   564 -17.269 -18.515  -0.618  -1.522                 
    IL     1     1 2     1     4    21    39   291   566  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    21    40   291   566  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    157 - A - -
    MR     3     2 3     5     3    21    39   290   565 -18.060  -0.000 -16.378                          1.980 -13.622 -4.171 -13.004 
     D     4     2 3     5     3    19    36   287   562 -18.250 -13.428  -0.000                         
    IR     5     5 3     5     3    21    39   290   565  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    156 - C - -
    MR     6     5 3     8     3    20    38   289   564  -6.613  -0.015 -16.378                         -12.278  1.980 -4.166 -11.691 
     D     7     5 3     8     3    19    36   287   562 -18.250 -13.428  -0.000                         
    IR     8     8 3     8     3    20    38   289   564  -6.775  -0.016  -9.014                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    154 - C - -
    MR     9     8 3    11     3    19    37   288   563  -5.074  -0.104  -4.646                         -14.687  2.000 -15.807 -12.847 
     D    10     8 3    11     3    19    36   287   562 -18.250  -0.026  -5.810                         
    IR    11    11 3    11     3    21    38   288   563  -8.281  -0.006 -10.520                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    152 - A - -
    MR    12    11 3    14     5    21    37   287   562 -17.271  -0.039  -6.737  -5.832 -18.190          1.894 -4.407 -4.835 -2.309 
     D    13    11 3    14     5    16    33   285   560  -1.436  -8.303  -4.858  -0.761  -8.641         
    IR    14    14 3    14     5    18    34   286   561  -7.769  -5.857 -11.280  -0.033 -10.554          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    150 g c - -
    MP    15    14 3    19     6    20    36   286   561 -18.160 -18.099  -0.098 -16.876  -3.928 -17.551 -12.152 -10.793 -11.969 -0.338 -5.954 -10.851 -2.770 -3.198 -12.406  2.986 -12.652  2.698 -0.978 -11.826 -6.039 -10.934 
    ML    16    14 3    19     6    17    34   283   558 -12.519 -12.865  -7.579  -0.009 -12.715 -10.244 -7.940 -7.130 -8.963  1.995 
    MR    17    14 3    19     6    18    33   285   560 -15.280 -14.009  -2.483 -13.987  -0.285 -12.201 -4.597  0.205  1.181 -0.891 
     D    18    14 3    19     6    13    27   279   554  -9.606  -8.304  -4.101  -4.784  -4.801  -0.209 
    IL    19    19 5    19     6    16    32   285   560  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    16    33   285   560  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    149 G C - -
    MP    21    20 6    25     6    20    35   284   559 -18.076 -18.015  -0.008 -16.792  -7.599 -13.870 -15.868 -12.644 -17.641 -4.589 -17.404 -13.848 -1.349 -17.274 -13.999  3.910 -14.207 -5.566 -0.961 -14.298 -14.267 -16.526 
    ML    22    20 6    25     6    17    33   282   557 -12.519 -12.865  -7.579  -0.009 -12.715 -10.244 -5.899 -1.376  1.843 -6.490 
    MR    23    20 6    25     6    17    31   284   558 -16.355 -15.084  -0.965 -15.063  -1.037 -13.276 -0.846  1.465 -1.076 -2.256 
     D    24    20 6    25     6    13    27   278   553  -9.606  -8.304  -4.101  -4.784  -4.801  -0.209 
    IL    25    25 5    25     6    16    32   284   558  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    16    32   283   558  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    148 C G - -
    MP    27    26 6    31     6    19    33   282   557 -18.151 -18.090  -0.000 -16.867 -17.147 -17.542 -15.189 -15.395 -14.524 -3.805 -12.894 -14.687  3.876 -13.799 -14.618 -0.904 -14.748 -13.675 -0.494 -15.050 -10.596 -13.425 
    ML    28    26 6    31     6    17    32   281   556 -12.519 -12.865  -0.011  -7.274 -12.715 -10.244 -1.354  1.839 -6.605 -5.603 
    MR    29    26 6    31     6    16    30   283   558 -15.448 -14.177  -8.307 -14.155  -0.005 -12.369 -7.235  1.345  0.107 -1.412 
     D    30    26 6    31     6    13    27   277   552 -10.042  -8.741  -4.538  -5.220  -5.237  -0.151 
    IL    31    31 5    31     6    15    31   282   556  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    16    31   282   556  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    147 G C - -
    MP    33    32 6    37     6    17    31   280   555  -4.631 -18.106  -0.177  -7.303  -3.861 -17.557 -12.752 -11.432 -12.553  0.775 -13.176 -3.886 -3.456 -13.056 -12.918  3.105 -13.168 -9.071  2.282 -2.100 -10.445 -1.235 
    ML    34    32 6    37     6    15    29   279   554  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    15    29   282   557 -15.445 -14.174 -10.083 -14.152  -0.002 -12.366  0.907  1.085 -10.501 -8.838 
     D    36    32 6    37     6    13    26   277   552 -10.042  -8.741  -4.538  -5.220  -5.237  -0.151 
    IL    37    37 5    37     6    18    32   281   556  -0.587 -12.152  -1.583 -13.808 -14.584 -14.244  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    15    30   279   554  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      8    146 g c - -
    MP    39    38 6    43     6    17    30   278   553 -18.054 -17.993  -0.042  -5.123 -17.050 -17.445 -12.014 -4.455 -0.625  2.570 -7.535 -4.335  0.208 -5.834 -12.271  2.660 -12.518 -0.963 -2.447 -1.124 -2.412 -1.058 
    ML    40    38 6    43     6    14    27   278   553 -11.769 -12.115  -6.829  -2.747 -11.965  -0.249 -4.691 -0.870 -5.437  1.762 
    MR    41    38 6    43     6    14    28   281   556 -16.587 -15.316  -3.575 -15.294  -0.127 -13.508 -1.311  1.402 -8.583 -0.070 
     D    42    38 6    43     6    13    26   277   551 -10.042  -8.741  -1.718  -5.220  -5.237  -0.645 
    IL    43    43 5    43     6    15    29   278   553  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    15    29   278   552  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      9    145 c g - -
    MP    45    44 6    49     6    16    28   276   551  -4.766 -17.968  -0.054 -16.745 -17.024 -17.420 -0.494 -11.664 -11.881  1.155 -3.954 -10.017  2.242 -11.611 -4.435  1.818 -12.331 -2.819  1.402 -7.346  0.917 -5.987 
    ML    46    44 6    49     6    14    27   278   553 -13.861 -14.207  -8.921  -0.004 -14.057 -11.586 -9.979 -8.842 -11.266  1.999 
    MR    47    44 6    49     6    13    27   280   555  -2.956  -4.447  -2.142 -15.168  -0.740 -13.382 -1.051  1.680 -7.048 -1.710 
     D    48    44 6    49     6    13    26   277   552 -14.708 -13.406  -9.203  -0.041  -9.903  -5.311 
    IL    49    49 5    49     6    15    27   275   550 -10.567  -1.703  -0.532 -12.485 -13.261 -12.921  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    14    27   275   550  -8.431  -0.006 -11.942 -10.110 -11.216          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     11    143 G C - -
    MP    51    50 6    55     4    14    26   274   549  -6.504 -17.536  -0.022  -7.815                 -12.150 -4.244 -11.975  0.765 -13.115 -12.586 -1.362 -1.105 -12.395  3.376 -12.650  1.191 -0.457 -11.841 -10.190 -10.934 
    ML    52    50 6    55     4    13    26   277   552  -0.316 -11.388  -2.356 -10.118                 -3.065  1.682 -6.996 -0.592 
    MR    53    50 6    55     4    12    25   282   557 -13.748 -12.777  -9.578  -0.002                 -9.680 -0.294 -10.541  1.670 
     D    54    50 6    55     4    11    24   277   552  -5.095  -4.776  -1.151  -1.047                 
    IL    55    55 5    55     4    14    26   277   551  -0.586  -2.067  -3.394 -14.266                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    13    25   274   549  -1.002  -0.999 -11.472                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     15      - U - - -
    ML    57    56 6    59     3    12    24   272   547 -18.281  -0.000 -16.935                         -5.665 -14.037 -16.544  1.993 
     D    58    56 6    59     3    11    24   281   556  -0.089 -11.466  -4.065                         
    IL    59    59 3    59     3    13    26   281   556  -0.199  -2.958 -14.800                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     25      - A - - -
    ML    60    59 3    62     2    11    23   271   546 -19.035  -0.000                                  1.735 -2.701 -1.931 -1.975 
     D    61    59 3    62     2    10    22   270   545 -10.490  -0.001                                 
    IL    62    62 3    62     2    11    23   271   546  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    10    22   270   545                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     0     5   237   512 -18.385  -0.007  -7.611                         
    IL    65    65 2    65     3     1     7   243   518  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]     97      - A - - -
    ML    66    65 2    68     3     2     5   237   512 -18.377  -0.000 -17.032                          1.123 -2.779  0.521 -2.053 
     D    67    65 2    68     3     0     5   261   536 -12.213  -7.726  -0.007                         
    IL    68    68 3    68     3     1     6   242   517  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]     98      - G - - -
    ML    69    68 3    71     3     1     4   236   511  -2.542  -0.272 -17.032                         -2.650 -5.745  1.432  0.169 
     D    70    68 3    71     3     0     5   261   536  -0.022  -7.726  -6.605                         
    IL    71    71 3    71     3     1     7   261   536  -0.097  -3.947 -17.219                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    119      - G - - -
    ML    72    71 3    74     3     1     3    26    44 -18.385  -0.052  -4.827                         -1.353 -13.494  1.789 -2.701 
     D    73    71 3    74     3     0     2    31    50  -6.174  -1.687  -0.566                         
    IL    74    74 3    74     3     1     4    36    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    120      - U - - -
    ML    75    74 3    77     3     1     2    25    43 -18.333  -0.003  -9.168                         -1.816 -5.269 -3.997  1.859 
     D    76    74 3    77     3     0     1    25    43 -14.980  -0.002  -9.372                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    121      - C - - -
    ML    78    77 3    80     5     1     3    24    42 -17.315  -0.005 -17.131  -8.258 -18.235         -2.801  1.821 -3.888 -1.972 
     D    79    77 3    80     5     0     0    24    41  -8.650  -0.049  -7.911  -6.286  -6.198         
    IL    80    80 3    80     5     1     1    27    43  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    122    140 G C - -
    MP    81    80 3    85     6     2     3    23    41 -18.242 -18.181  -0.000 -14.089 -17.238 -14.316 -12.297 -9.695 -12.122  1.573 -13.263 -12.736  1.670 -12.799 -12.542  3.022 -12.798 -0.269 -2.308 -11.990 -10.339 -0.541 
    ML    82    80 3    85     6     1     1    25    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    23    38 -11.459 -10.188  -6.097 -10.166  -0.029  -8.380 -4.997 -6.646  1.978 -5.737 
     D    84    80 3    85     6     0     0    23    37  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1    26    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    25    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    123    139 c g - -
    MP    87    86 6    91     6     2     4    21    39 -18.242 -18.181  -0.000 -16.958 -17.237 -17.632 -12.517 -0.790 -12.515 -0.661 -8.535 -13.351  2.340 -0.053 -12.388  1.545 -12.896  1.735  0.984 -6.394 -1.593 -2.382 
    ML    88    86 6    91     6     1     1    23    38  -6.704  -7.050  -1.765  -0.658  -6.900  -4.430  0.042 -0.844  0.677 -0.296 
    MR    89    86 6    91     6     1     1    21    36 -11.459 -10.188  -6.097 -10.166  -0.029  -8.380  1.981 -6.216 -5.608 -5.822 
     D    90    86 6    91     6     0     0    20    35  -9.555  -8.253  -4.050  -4.732  -4.750  -0.217 
    IL    91    91 5    91     6     1     1    24    39  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    23    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    124    138 G C - -
    MP    93    92 6    97     6     2     4    19    37 -18.242 -18.181  -0.000 -11.870 -17.237 -17.632 -9.997  0.953 -12.335  0.309 -7.439 -10.062  1.294 -12.261 -12.421  3.087 -4.523 -9.188  0.678 -12.363 -2.246 -6.373 
    ML    94    92 6    97     6     1     1    20    36  -6.704  -7.050  -0.825  -1.459  -6.900  -4.430  0.042 -0.844  0.677 -0.296 
    MR    95    92 6    97     6     1     1    19    35 -11.459 -10.188  -6.097 -10.166  -5.300  -0.062 -4.997 -6.646  1.978 -5.737 
     D    96    92 6    97     6     0     0    18    34  -9.555  -8.253  -4.050  -4.732  -4.750  -0.217 
    IL    97    97 5    97     6     1     1    22    37  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    21    37  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    125    137 G C - -
    MP    99    98 6   103     6     2     3    17    35 -18.242 -18.181  -0.000 -16.957 -17.237 -17.632 -15.142 -12.835 -15.706  1.398 -17.087 -14.539 -3.956 -15.708 -14.108  3.606 -14.464 -6.878  0.161 -14.749 -14.143 -14.364 
    ML   100    98 6   103     6     1     1    18    34  -7.805  -8.151  -0.328  -2.560  -8.001  -5.530 -1.176  1.428 -1.973 -0.707 
    MR   101    98 6   103     6     1     1    19    35  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   102    98 6   103     6     0     0    16    34 -14.070 -12.768  -8.565  -9.247  -0.062  -4.732 
    IL   103   103 5   103     6     1     1    20    35  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    19    35  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    126    136 G C - -
    MP   105   104 6   109     4     2     2    15    33  -4.539  -6.131  -0.085 -16.092                 -16.161 -12.799 -18.429 -3.470 -17.800 -13.966 -12.101 -17.909 -14.167  3.992 -14.361 -10.729 -12.463 -14.431 -14.549 -17.491 
    ML   106   104 6   109     4     1     1    15    33  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    16    34  -9.477  -8.506  -6.373  -0.024                  1.981 -6.216 -5.608 -5.822 
     D   108   104 6   109     4     0     0    15    33  -5.046  -4.727  -2.743  -0.354                 
    IL   109   109 5   109     4     1     1    14    32  -9.804 -10.488  -0.003 -12.973                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    14    32  -6.973  -0.013  -9.673                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    128      - U - - -
    ML   111   110 6   113     3     1     1    13    31 -18.380  -0.000 -17.034                         -4.617 -14.080 -16.461  1.985 
     D   112   110 6   113     3     0     0    15    33 -11.594  -0.043  -5.117                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    129      - U - - -
    ML   114   113 3   116     3     1     1    11    30 -18.385  -0.000 -17.039                         -12.357 -6.503 -5.117  1.985 
     D   115   113 3   116     3     0     0    17    36  -6.814  -2.327  -0.337                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    130      - C - - -
    ML   117   116 3   119     3     1     1    10    29 -18.385  -0.000 -17.039                         -6.218  1.995 -14.024 -12.749 
     D   118   116 3   119     3     0     0    16    35  -6.814  -2.327  -0.337                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    131      - G - - -
    ML   120   119 3   122     3     1     1     9    27 -18.385  -0.000 -17.039                          0.752 -13.401  1.211 -13.272 
     D   121   119 3   122     3     0     0    15    34  -6.814  -2.327  -0.337                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    132      - A - - -
    ML   123   122 3   125     3     1     1     8    26 -18.385  -0.000 -17.039                          1.989 -14.185 -6.679 -5.683 
     D   124   122 3   125     3     0     0    14    33  -6.814  -2.327  -0.337                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    133      - g - - -
    ML   126   125 3   128     3     1     1     6    24 -18.385  -0.000 -17.039                          0.545 -2.008  0.638 -0.441 
     D   127   125 3   128     3     0     0    13    31  -6.814  -2.327  -0.337                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    134      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -6.620 -1.065 -6.377  1.807 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     0     6    86   155   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     0     6    86   155                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     0    62   132  -0.154 -16.377  -3.309 -16.424                 
                                             [ MATP   18 ]     26     59 G C - -
    MP   136   135 1   140     6     2     2    61   131 -18.093 -18.033  -0.285  -3.531  -3.435 -17.484 -15.811 -12.672 -17.344 -4.846 -17.173 -13.896 -3.416 -17.016 -14.017  3.957 -14.233 -2.210 -3.297 -14.335 -5.453 -16.181 
    ML   137   135 1   140     6     1     1    59   128  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     1    65   135 -16.350 -15.079 -10.988 -15.057  -0.001 -13.271 -11.439  1.440 -12.571  0.363 
     D   139   135 1   140     6     0     0    61   131  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1    61   130  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1    61   130  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     27     58 C G - -
    MP   142   141 6   146     6     2     2    58   128 -17.809  -6.093  -0.127  -6.154  -5.536  -4.878 -14.866 -15.148 -4.090 -11.385 -12.534 -14.328  3.911 -4.218 -14.287 -11.357 -14.407 -13.553 -0.339 -14.700 -4.230 -13.089 
    ML   143   141 6   146     6     1     1    58   124 -15.440 -15.786 -10.501  -0.001 -15.636 -13.166 -10.269 -9.684  0.334  1.453 
    MR   144   141 6   146     6     1     1    64   134 -17.216 -15.945  -5.073 -15.923  -0.044 -14.137 -3.257  0.459  0.300  0.368 
     D   145   141 6   146     6     0     0    61   131  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     1    58   128  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1    56   126  -7.630  -0.011 -11.141  -9.309 -10.415          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     28     56 U A - -
    MP   148   147 6   152     6     2     2    55   125 -17.716 -17.655  -0.000 -16.432 -16.712 -17.107 -14.770 -15.040 -14.090 -11.278 -5.048 -14.237 -8.156 -13.358 -6.139 -3.727 -14.314 -13.424  3.859 -14.608  0.444 -12.995 
    ML   149   147 6   152     6     1     1    57   123 -15.620 -15.967  -0.728  -1.336 -15.816 -13.346 -7.827 -1.092  0.140  1.278 
    MR   150   147 6   152     6     1     1    64   133 -17.296 -16.025 -11.933 -16.003  -0.567  -1.623 -3.512 -2.354  0.778  1.002 
     D   151   147 6   152     6     0     0    61   131 -16.959 -15.658 -11.455 -12.137 -12.154  -0.001 
    IL   152   152 5   152     6     1     1    57   127  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     1    57   127  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     29     55 C G - -
    MP   154   153 6   158     4     2     2    53   123 -17.051 -17.258  -0.076  -4.285                 -14.880 -15.162 -14.198 -2.358 -4.101 -4.799  3.832 -13.464 -14.302 -11.371 -14.421 -13.567 -1.503 -14.714  0.156 -13.103 
    ML   155   153 6   158     4     1     1    57   117 -11.373  -0.007  -8.122 -10.285                  0.249 -8.572  1.488 -8.248 
    MR   156   153 6   158     4     1     1    63   133 -14.755 -13.784  -3.794  -0.108                 -1.036 -8.316  0.954  0.653 
     D   157   153 6   158     4     0     0    61   131 -14.192 -13.873  -1.815  -0.483                 
    IL   158   158 5   158     4     1     1    56   123  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     1    56   116  -0.503  -1.765 -12.712                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     30      - A - - -
    ML   160   159 6   162     3     1     1    44   109  -4.884  -0.052  -9.606                          2.000 -13.941 -13.206 -13.273 
     D   161   159 6   162     3     0     0    62   132  -2.548  -5.797  -0.302                         
    IL   162   162 3   162     3     1     1    51   107  -0.545  -1.669 -13.497                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     35      - G - - -
    ML   163   162 3   165     3     1     1    22    92 -18.095  -0.000 -16.749                         -1.939 -5.892  1.888 -5.536 
     D   164   162 3   165     3     0     0    63   133  -1.938  -7.491  -0.447                         
    IL   165   165 3   165     3     1     1    68   138  -0.380  -2.111 -13.501                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     41      - u - - -
    ML   166   165 3   168     3     1     1    15    31 -18.178  -0.323  -2.319                         -3.379  0.805 -1.500  0.851 
     D   167   165 3   168     3     0     0    11    30 -16.901 -10.160  -0.001                         
    IL   168   168 3   168     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     42      - U - - -
    ML   169   168 3   171     3     1     1    14    30  -3.757  -0.111 -16.509                         -1.658 -0.588 -3.417  1.548 
     D   170   168 3   171     3     0     0    10    28 -18.101  -0.903  -1.103                         
    IL   171   171 3   171     3     1     1    14    30  -2.674  -0.246 -11.742                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     45      - G - - -
    ML   172   171 3   174     3     1     1    10    28 -18.162  -0.000 -16.816                         -5.317 -14.460  1.991 -13.433 
     D   173   171 3   174     3     0     0     9    27 -16.998  -6.272  -0.019                         
    IL   174   174 3   174     3     1     1    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     46      - G - - -
    ML   175   174 3   177     3     1     1     9    27 -18.165  -0.000 -16.819                         -5.737 -14.463  1.993 -13.436 
     D   176   174 3   177     3     0     0     8    26 -16.980  -4.939  -0.048                         
    IL   177   177 3   177     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     47      - U - - -
    ML   178   177 3   180     3     1     1     7    26  -4.155  -0.512  -2.045                         -4.824 -0.073 -10.858  1.591 
     D   179   177 3   180     3     0     0     5    23 -16.932 -12.445  -0.000                         
    IL   180   180 3   180     3     1     1     7    26  -8.720  -0.004 -11.420                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     49      - U - - -
    ML   181   180 3   183     3     1     1     6    25 -17.773  -0.060  -4.624                         -4.653 -0.651 -1.411  1.559 
     D   182   180 3   183     3     0     0     5    23 -18.272  -0.292  -2.450                         
    IL   183   183 3   183     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     50      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.954 -6.518 -3.134 -13.207 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     0    68   135 -18.385  -0.000 -17.039                         
    IL   189   189 2   189     3     1     1    70   137  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     60      - G - - -
    ML   190   189 2   192     5     1     1    68   135 -17.318  -0.023  -5.972 -17.345 -18.237          0.915 -13.225  1.061 -5.154 
     D   191   189 2   192     5     0     0    66   133  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   192   192 3   192     5     1     1    68   135  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     61     96 c g - -
    MP   193   192 3   197     6     2     2    67   134 -18.224 -18.163  -0.064  -4.522 -17.219 -17.614 -6.771 -1.003 -11.764 -0.053 -5.708 -3.943  2.907 -6.450 -3.506  0.699 -12.256 -0.028  1.273 -8.114  0.863 -10.626 
    ML   194   192 3   197     6     1     1    62   129 -13.161 -13.507  -8.221  -0.006 -13.357 -10.886 -6.439 -6.219  0.319  1.447 
    MR   195   192 3   197     6     1     1    65   131  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   196   192 3   197     6     0     0    61   128  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   197   197 5   197     6     1     1    67   133  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     1    66   133  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     62     95 a u - -
    MP   199   198 6   203     6     2     2    65   132 -18.159 -18.099  -0.076 -16.875  -4.289 -17.550 -12.410 -11.802 -12.368  2.854 -11.538 -13.148  1.990 -9.735 -12.345  1.784 -12.808 -2.501 -0.455 -12.467 -1.214 -6.282 
    ML   200   198 6   203     6     1     1    61   128 -15.036 -15.382  -2.438  -0.295 -15.232 -12.761  1.868 -9.365 -1.529 -9.165 
    MR   201   198 6   203     6     1     1    62   129  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   202   198 6   203     6     0     0    59   126  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   203   203 5   203     6     1     1    65   131  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     1    64   131  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     63     94 g c - -
    MP   205   204 6   209     6     2     2    64   130 -18.101 -18.040  -0.000 -16.817 -17.097 -17.492 -14.249 -14.138 -13.902  0.551 -12.472 -14.311  2.250 -13.284 -13.898  2.935 -14.190 -11.936  0.931 -14.263 -2.169 -12.661 
    ML   206   204 6   209     6     1     1    59   126 -14.743 -15.089  -3.220  -9.498 -14.939  -0.166 -1.262 -10.071  1.840 -9.166 
    MR   207   204 6   209     6     1     1    58   125 -15.285 -14.014  -9.923 -13.992  -9.126  -0.004 -8.560 -10.331  1.998 -9.319 
     D   208   204 6   209     6     0     0    58   125  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   209   209 5   209     6     1     1    63   130  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     1    63   129  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     64     93 G C - -
    MP   211   210 6   215     6     2     2    62   128 -18.109  -4.806  -0.053 -16.825 -17.105 -17.500 -13.166 -11.980 -12.908 -1.580 -2.798 -10.190  2.364 -13.144 -13.244  3.334 -13.471 -2.577 -3.780 -12.876 -4.538 -11.847 
    ML   212   210 6   215     6     1     1    60   127  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   213   210 6   215     6     1     1    60   126  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   214   210 6   215     6     0     0    57   124 -18.813 -17.511 -13.308 -13.990 -14.008  -0.000 
    IL   215   215 5   215     6     1     1    61   127  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     1    58   125  -9.191  -7.279 -12.702 -10.870  -0.013          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]     65     91 a u - -
    MP   217   216 6   221     4     2     2    60   126 -17.285  -6.745  -0.058  -5.058                 -4.740 -0.514  0.448  2.749 -12.974 -12.439 -0.524 -4.266  0.205  1.747 -12.527 -0.269 -8.305 -8.560  0.090 -5.680 
    ML   218   216 6   221     4     1     1    59   126  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   219   216 6   221     4     1     1    58   125  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   220   216 6   221     4     0     0    57   124 -14.675  -1.927 -12.372  -0.441                 
    IL   221   221 5   221     4     1     1    60   127  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     1    60   127  -0.587  -9.403  -1.588                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     66      - C - - -
    ML   223   222 6   225     3     1     1    58   124 -18.137  -0.021  -6.138                         -1.083  1.034 -11.461  0.566 
     D   224   222 6   225     3     0     0    55   122 -17.143 -12.656  -0.000                         
    IL   225   225 3   225     3     1     1    58   125  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     67      - U - - -
    ML   226   225 3   228     3     1     1    57   123  -4.904  -0.054  -8.351                         -15.426 -14.032 -17.024  2.000 
     D   227   225 3   228     3     0     0    55   122 -17.248  -2.385  -0.307                         
    IL   228   228 3   228     3     1     1    63   130  -0.453  -9.162  -1.900                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     73      - c - - -
    ML   229   228 3   231     3     1     1    55   121 -18.120  -0.000 -16.774                         -0.175  0.427 -0.177 -0.175 
     D   230   228 3   231     3     0     0    56   122 -17.228 -12.741  -0.000                         
    IL   231   231 3   231     3     1     1    56   122  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     74      - u - - -
    ML   232   231 3   234     3     1     1    54   120 -18.120  -0.000 -16.774                          0.059 -0.177 -0.177  0.250 
     D   233   231 3   234     3     0     0    56   122 -17.228 -12.741  -0.000                         
    IL   234   234 3   234     3     1     1    55   121  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     75      - u - - -
    ML   235   234 3   237     3     1     1    53   119  -3.718  -0.114 -16.774                         -0.175 -0.177 -0.177  0.428 
     D   236   234 3   237     3     0     0    56   122  -2.126  -6.148  -0.402                         
    IL   237   237 3   237     3     1     1    61   128  -0.398  -2.052 -14.535                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     83      - A - - -
    ML   238   237 3   240     3     1     1    19    48  -8.540  -0.004 -16.843                          1.956 -4.634 -4.636 -4.633 
     D   239   237 3   240     3     0     0    24    53  -3.429  -3.581  -0.280                         
    IL   240   240 3   240     3     1     1    27    57  -0.898  -1.111 -10.763                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     87      - A - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                  1.596 -0.297 -4.769 -2.989 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Met
ACC   bact-Met-r2-022416
LENG  77
MAXL  287
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 18:39:22 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Met-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Met-r2-022416.sto
NSEQ  5196
EFFN  8.319935
CKSUM 3113436217
STATS LOCAL MSV       -8.4189  0.71936
STATS LOCAL VITERBI   -9.4458  0.71936
STATS LOCAL FORWARD   -3.0622  0.71936
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50514  1.34485  1.25780  1.45604
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89454  4.89454  1.46634  0.26236  0.00000        *
      1   1.92270  2.58837  0.37807  2.37019      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.07185  4.89454  2.78318  1.46634  0.26236  1.09861  0.40547
      2   2.72868  3.07839  0.17916  2.94330      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02018  4.84657  4.41265  1.46634  0.26236  0.36910  1.17557
      3   3.45427  0.23211  2.84981  2.13983      3 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.01517  4.88924  4.88924  1.46634  0.26236  1.54965  0.23867
      4   1.77147  2.35170  0.70043  1.43407      4 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.11236  3.18826  2.73291  1.14978  0.38083  1.54965  0.23867
      5   1.25921  1.94511  0.91352  1.76003      8 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.02100  4.83012  4.35829  1.46634  0.26236  1.73760  0.19352
      6   1.63043  1.28402  1.48920  1.19839      9 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.04645  3.28509  4.83466  0.28939  1.38120  1.70569  0.20046
      7   1.75757  2.36327  0.45856  2.29036     11 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.05133  3.24765  4.49495  1.15366  0.37904  0.20821  1.67150
      8   3.52911  3.50107  4.17608  0.07780     15 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.07203  2.77598  4.93241  1.88803  0.16413  1.24374  0.34010
      9   0.31774  2.58187  2.41257  2.23504     25 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.10501  4.93242  2.38083  1.46634  0.26236  0.85945  0.55060
     10   3.07275  3.82758  0.09735  3.70073     26 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.09682  4.84698  2.47181  1.46634  0.26236  2.69648  0.06982
     11   3.33721  0.21433  3.24762  2.13268     27 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.05967  4.76731  3.00744  1.46634  0.26236  2.70970  0.06888
     12   3.46853  2.42413  3.30519  0.17009     28 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01779  4.73116  4.73116  1.46634  0.26236  3.35885  0.03539
     13   2.96496  0.32419  2.91444  1.76557     29 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01779  4.73116  4.73116  1.46634  0.26236  1.73896  0.19323
     14   0.04107  4.51122  4.14195  4.31565     30 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.08597  2.61892  4.65657  1.00077  0.45822  1.25473  0.33569
     15   2.46025  3.71099  0.15573  3.37133     35 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.06335  2.93211  4.81549  1.23198  0.34491  2.82284  0.06128
     16   2.08547  1.00999  2.22652  0.90727     41 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.19969  4.81643  1.75493  1.46634  0.26236  2.92634  0.05508
     17   1.95546  1.73019  2.60605  0.49853     42 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.08077  2.68972  4.63642  0.38551  1.13975  0.65552  0.73225
     18   3.75459  4.90895  0.04368  4.42673     45 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01647  4.80755  4.80755  1.46634  0.26236  2.78965  0.06341
     19   3.81165  4.93898  0.04181  4.45073     46 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01644  4.80930  4.80930  1.46634  0.26236  2.54306  0.08189
     20   2.70269  1.55139  3.32117  0.37846     47 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.30319  2.91416  1.57365  0.27637  1.42102  2.94498  0.05404
     21   2.17650  1.77094  2.24853  0.49293     49 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.05319  4.59157  3.17819  1.46634  0.26236  0.24365  1.53138
     22   0.08586  3.94355  3.17375  3.86074     50 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.07288  3.22843  3.48466  0.97559  0.47316  1.19122  0.36219
     23   2.19193  3.02348  0.26587  2.61550     55 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.10073  4.85850  2.42969  1.46634  0.26236  0.46224  0.99390
     24   0.28058  3.27788  1.93300  2.77684     56 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.02631  4.01625  4.83550  0.72765  0.65980  1.14944  0.38099
     25   2.31955  3.04364  0.23406  2.76931     58 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01550  4.86802  4.86802  1.46634  0.26236  0.18018  1.80251
     26   3.47116  0.16139  3.46492  2.44553     59 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93585  4.93585  1.46634  0.26236  1.09861  0.40547
     27   0.79441  3.44448  0.75965  3.02826     60 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93585  4.93585  1.46634  0.26236  1.09861  0.40547
     28   1.81026  1.07562  1.59743  1.22798     61 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93585  4.93585  1.46634  0.26236  1.09861  0.40547
     29   1.20320  1.43049  1.25841  1.73460     62 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.05652  4.93586  3.04143  1.46634  0.26236  1.09861  0.40547
     30   1.94255  1.34386  0.91390  1.63544     63 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.05404  4.89443  3.09850  1.46634  0.26236  2.15742  0.12287
     31   2.13128  1.37655  0.67607  2.11816     64 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04628  4.85608  3.28479  1.46634  0.26236  2.61549  0.07594
     32   1.14152  1.73621  1.27252  1.49453     65 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.04964  4.82596  3.20865  1.46634  0.26236  2.86144  0.05889
     33   1.81562  0.84720  2.86228  1.04551     66 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.02859  4.79303  3.91721  1.46634  0.26236  3.06927  0.04757
     34   3.92589  3.70040  4.47389  0.05746     67 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.04762  3.33450  4.52125  1.09017  0.40971  1.56103  0.23562
     35   1.34162  1.32046  1.60195  1.30910     73 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.04370  4.81041  3.36355  1.46634  0.26236  2.96586  0.05289
     36   1.26348  1.56576  1.59352  1.18681     74 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01687  4.78358  4.78358  1.46634  0.26236  1.41489  0.27833
     37   1.33373  1.56091  1.59755  1.12648     75 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.11905  2.26169  4.82059  1.33515  0.30533  1.92184  0.15822
     38   0.10237  3.52077  3.37065  3.40051     83 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02952  3.85672  4.83385  0.75590  0.63410  1.99636  0.14598
     39   0.40244  1.75950  2.83066  2.30048     87 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.05481  3.09098  4.84368  0.89157  0.52765  1.77583  0.18554
     40   1.68025  1.46657  1.35835  1.12125     91 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.04628  3.28479  4.85608  0.37378  1.16515  2.61549  0.07594
     41   2.31401  0.74359  1.30670  1.86420     93 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.02043  4.85608  4.38675  1.46634  0.26236  0.72106  0.66600
     42   1.82345  1.00081  1.20173  1.77034     94 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.02478  4.89462  4.07537  1.46634  0.26236  2.15455  0.12325
     43   2.00477  1.35394  1.27155  1.11875     95 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01523  4.88508  4.88508  1.46634  0.26236  0.49588  0.93914
     44   1.53658  1.77907  0.87221  1.61916     96 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01467  4.92235  4.92235  1.46634  0.26236  0.76337  0.62753
     45   0.76325  2.42482  1.18048  1.97886     97 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01454  4.93154  4.93154  1.46634  0.26236  0.81130  0.58749
     46   2.14091  2.86043  0.52214  1.46119     98 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.17735  1.86223  4.93586  2.71458  0.06853  1.09861  0.40547
     47   2.14229  3.51222  0.23427  2.78649    119 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04504  4.93587  3.30064  1.46634  0.26236  1.09861  0.40547
     48   2.41833  2.90328  3.22954  0.20271    120 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01639  4.90574  4.72697  1.46634  0.26236  0.32917  1.27125
     49   2.75073  0.23478  3.41564  2.18463    121 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01728  4.93445  4.61116  1.46634  0.26236  0.98305  0.46868
     50   1.61444  1.83484  0.63273  2.20529    122 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01455  4.93311  4.92796  1.46634  0.26236  1.21837  0.35057
     51   1.79848  1.22945  1.22331  1.39537    123 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01451  4.93307  4.93307  1.46634  0.26236  1.21989  0.34993
     52   1.59395  1.87663  0.70301  1.90594    124 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01451  4.93307  4.93307  1.46634  0.26236  1.21989  0.34993
     53   1.71225  2.92774  0.39514  2.38126    125 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01451  4.93307  4.93307  1.46634  0.26236  1.21989  0.34993
     54   3.51927  4.66979  0.04995  4.63313    126 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.05194  3.13715  4.93308  0.30421  1.33830  1.21989  0.34993
     55   3.34016  3.42512  4.06757  0.08894    128 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01451  4.93307  4.93307  1.46634  0.26236  0.89660  0.52417
     56   3.36689  3.21931  3.67963  0.10504    129 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93581  4.93581  1.46634  0.26236  1.10033  0.40461
     57   4.18988  0.04784  4.72406  3.78607    130 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93581  4.93581  1.46634  0.26236  1.10033  0.40461
     58   0.88853  3.59077  0.64716  3.27983    131 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93581  4.93581  1.46634  0.26236  1.10033  0.40461
     59   0.04190  4.53594  4.13309  4.24865    132 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93581  4.93581  1.46634  0.26236  1.10033  0.40461
     60   1.09452  2.13075  1.15808  1.45903    133 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93581  4.93581  1.46634  0.26236  1.10033  0.40461
     61   3.05083  2.11852  3.53741  0.21892    134 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02670  3.95505  4.93582  0.63255  0.75765  1.10033  0.40461
     62   4.66098  0.06185  4.54236  3.22208    136 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01748  4.93581  4.59081  1.46634  0.26236  1.10033  0.40461
     63   2.53978  0.44063  2.74431  1.54555    137 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01456  4.93285  4.92707  1.46634  0.26236  0.88380  0.53309
     64   2.11255  0.67105  1.72351  1.66358    138 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93577  4.93577  1.46634  0.26236  1.10226  0.40365
     65   1.61737  1.55714  1.15562  1.28743    139 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01447  4.93577  4.93577  1.46634  0.26236  1.09136  0.40911
     66   2.61011  0.74306  1.73673  1.29200    140 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.04142  3.56325  4.40402  0.44731  1.01984  1.09861  0.40547
     67   2.50006  0.61365  2.36545  1.26357    143 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.05326  3.75623  3.55819  0.53360  0.88307  1.30888  0.31488
     68   1.44880  1.56351  1.06915  1.54906    145 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01491  4.90927  4.90290  1.46634  0.26236  0.52167  0.90024
     69   2.09741  0.98946  1.70724  1.12676    146 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01455  4.93071  4.93071  1.46634  0.26236  0.77879  0.61426
     70   1.59759  0.75977  2.17986  1.52886    147 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02227  4.93485  4.21067  1.46634  0.26236  1.10074  0.40440
     71   2.30046  2.83253  0.22814  3.10314    148 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01460  4.92717  4.92717  1.46634  0.26236  1.39714  0.28409
     72   2.92397  0.22794  2.87408  2.36831    149 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01460  4.92722  4.92722  1.46634  0.26236  1.40193  0.28252
     73   2.57608  0.72766  2.42021  1.04416    150 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02692  4.92297  3.94847  1.46634  0.26236  0.67775  0.70878
     74   0.16479  3.14536  3.21874  2.67550    152 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.09578  3.43828  2.82656  0.52905  0.88956  0.56233  0.84369
     75   4.04854  0.06289  4.54222  3.41556    154 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02867  4.01196  4.58876  0.89565  0.52483  2.08257  0.13308
     76   3.56503  0.10282  3.75078  3.08089    156 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02054  4.58876  4.58876  1.46634  0.26236  2.08257  0.13308
     77   0.07650  3.99386  3.40596  3.81471    157 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01032  4.57854        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Phe
ACC      bact-Phe-r2-022416
STATES   242
NODES    65
CLEN     76
W        1088
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 18:43:19 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Phe-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Phe-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Phe-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     6546
EFFN     6546.000000
CKSUM    2778915989
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -10.2108 0.71894
ECMLC    0.67336    -7.59228     1.64295     1600000      602405  0.001992
ECMGC    0.36139   -32.48753   -20.83297     1600000       26992  0.014819
ECMLI    0.65419    -7.20959     2.17095     1600000      555013  0.002162
ECMGI    0.37325   -29.39448   -18.24233     1600000       25694  0.015568
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1088  2319 -17.603 -18.848  -0.821  -1.205                 
    IL     1     1 2     1     4    23    45  1091  2322  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    24    46  1092  2323  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    208 - A - -
    MR     3     2 3     5     3    24    46  1091  2321 -18.190  -0.000 -16.508                          2.000 -13.819 -13.082 -13.151 
     D     4     2 3     5     3    21    43  1088  2318 -18.900 -14.078  -0.000                         
    IR     5     5 3     5     3    24    46  1091  2322  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    207 - C - -
    MR     6     5 3     8     3    23    45  1090  2320 -18.190  -0.000 -16.508                         -14.836  2.000 -15.974 -12.983 
     D     7     5 3     8     3    21    43  1088  2318 -18.900 -14.078  -0.000                         
    IR     8     8 3     8     3    23    45  1090  2321  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    206 - C - -
    MR     9     8 3    11     3    22    44  1089  2319 -18.190  -0.000 -16.508                         -14.836  2.000 -15.974 -12.983 
     D    10     8 3    11     3    21    43  1088  2318 -18.900  -0.059  -4.635                         
    IR    11    11 3    11     3    22    44  1089  2319  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    205 - A - -
    MR    12    11 3    14     5    21    43  1088  2318  -5.364  -0.119 -17.441  -4.192 -18.545          1.580 -1.709 -1.902 -1.197 
     D    13    11 3    14     5    19    41  1084  2315 -12.399  -7.753  -0.027 -11.456  -6.192         
    IR    14    14 3    14     5    21    43  1088  2319  -1.523  -0.745  -4.189 -11.372 -12.477          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    202 G C - -
    MP    15    14 3    19     6    20    42  1087  2317 -18.470 -18.409  -0.060 -17.186 -17.465  -4.621 -12.475 -11.117 -12.294 -0.563 -1.068 -12.892  0.032 -5.674 -12.725  3.598 -2.414 -1.389  0.167 -12.153 -10.479 -11.257 
    ML    16    14 3    19     6    22    43  1084  2315 -13.760 -14.106  -8.820  -0.004 -13.956 -11.485 -9.839 -8.722 -11.106  1.999 
    MR    17    14 3    19     6    22    43  1085  2315 -15.775 -14.504  -2.039 -14.482  -0.406  -8.902 -9.630  1.974 -10.035 -3.862 
     D    18    14 3    19     6    16    36  1078  2308 -10.889  -9.587  -5.385  -6.067  -6.084  -0.082 
    IL    19    19 5    19     6    19    41  1086  2317  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    19    41  1086  2317  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    201 G C - -
    MP    21    20 6    25     6    23    44  1085  2316 -18.431 -18.370  -0.017  -6.429 -17.427 -17.822 -1.840 -1.570 -12.221 -1.801 -13.342 -1.732  2.594 -12.908 -7.202  3.015 -4.018 -1.494 -2.002 -12.076 -10.419 -11.186 
    ML    22    20 6    25     6    21    42  1083  2314 -13.760 -14.106  -3.228  -0.164 -13.956 -11.485  1.997 -9.098 -8.338 -8.454 
    MR    23    20 6    25     6    22    43  1083  2314  -2.316 -14.100  -5.346 -14.078  -0.369 -12.291 -3.497  0.764  1.141 -6.973 
     D    24    20 6    25     6    16    36  1078  2308 -17.888 -16.586  -7.717 -13.065 -13.082  -0.007 
    IL    25    25 5    25     6    22    43  1084  2315  -8.436  -8.699  -0.010 -10.354 -11.130 -10.790  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    19    41  1084  2315  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      4    200 c g - -
    MP    27    26 6    31     6    21    42  1083  2314 -18.432 -18.372  -0.002 -17.148  -9.830 -17.823 -12.730 -12.429 -12.729  1.726 -3.722 -13.573  2.931 -5.292 -12.588  1.360 -2.172 -2.003  0.863 -12.912 -3.274 -11.307 
    ML    28    26 6    31     6    20    41  1082  2313 -14.283 -14.630  -0.054  -4.782 -14.479 -12.009 -8.909  1.394 -10.006  0.453 
    MR    29    26 6    31     6    21    42  1082  2312 -15.004 -13.733  -1.415 -13.711  -0.679 -11.925 -8.286 -10.059  1.998 -9.046 
     D    30    26 6    31     6    16    36  1078  2308 -17.881 -16.579 -12.376 -13.058 -13.076  -0.001 
    IL    31    31 5    31     6    19    41  1082  2313  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    19    41  1082  2313  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      5    199 c g - -
    MP    33    32 6    37     6    19    40  1081  2312 -18.491 -18.430  -0.103 -17.207  -8.035  -3.938 -12.740 -8.071 -4.233  0.763 -9.932 -13.589  2.445 -12.288 -10.495  1.142 -13.127 -1.302  2.347 -1.146 -2.438 -1.107 
    ML    34    32 6    37     6    19    40  1079  2310  -9.575  -9.922  -4.636  -0.074  -9.771  -7.301 -3.489 -3.183 -4.277  1.907 
    MR    35    32 6    37     6    20    41  1080  2311 -14.399 -13.128  -0.076 -13.106  -4.297 -11.320 -7.703 -9.477  1.997 -8.465 
     D    36    32 6    37     6    16    36  1078  2308 -17.881 -16.579  -1.507 -13.058 -13.076  -0.626 
    IL    37    37 5    37     6    19    40  1080  2311  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    19    40  1080  2311  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      6    198 c g - -
    MP    39    38 6    43     6    21    41  1079  2310 -18.441 -18.381  -0.000 -17.157 -17.437 -17.832 -8.887 -12.436 -12.737  2.172 -3.078 -13.581  2.601 -12.257 -12.596  1.412 -13.109 -3.577  1.089 -12.919 -1.490 -3.667 
    ML    40    38 6    43     6    19    39  1078  2309  -9.575  -9.922  -0.089  -4.330  -9.771  -7.301 -4.106  1.924 -4.776 -3.180 
    MR    41    38 6    43     6    17    37  1075  2306 -12.253 -10.982  -6.891 -10.961  -0.016  -9.174 -2.921 -0.231 -0.244  1.119 
     D    42    38 6    43     6    16    36  1076  2307 -19.062 -17.760  -0.431 -14.239 -14.257  -1.955 
    IL    43    43 5    43     6    18    38  1078  2309  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    18    38  1078  2309  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      7    197 g c - -
    MP    45    44 6    49     6    19    39  1077  2308  -5.780 -18.480  -0.045 -17.256  -6.332 -17.931 -12.525 -11.196 -12.351  1.945 -13.284 -12.955  0.780 -12.973 -12.762  2.946 -13.021 -1.991  0.446 -5.511  0.123 -11.299 
    ML    46    44 6    49     6    17    37  1076  2306  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    16    36  1074  2305 -12.253 -10.982  -6.891 -10.961  -0.016  -9.174 -6.410  1.985 -6.860 -5.503 
     D    48    44 6    49     6    15    35  1074  2304 -17.108 -15.806  -1.357 -12.286 -12.303  -0.715 
    IL    49    49 5    49     6    19    38  1076  2307  -9.539  -9.802  -0.005 -11.457 -12.233 -11.893  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    17    38  1076  2307  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      9    196 g c - -
    MP    51    50 6    55     4    18    37  1075  2306 -17.765 -17.972  -0.000 -16.386                 -12.513 -6.410 -12.332  2.027 -13.462 -12.930  0.141 -13.020 -12.768  2.660 -13.015  0.194  1.615 -1.836 -10.537 -11.297 
    ML    52    50 6    55     4    16    36  1074  2305  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    15    35  1073  2304 -12.116 -11.145  -4.038  -0.092                 -7.165 -0.230 -7.959  1.649 
     D    54    50 6    55     4    15    34  1073  2303 -11.817 -11.498  -2.237  -0.345                 
    IL    55    55 5    55     4    17    37  1075  2306  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    17    36  1075  2305  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     10      - U - - -
    ML    57    56 6    59     3    16    35  1073  2304 -18.680  -0.000 -17.334                         -15.609 -2.286 -16.936  1.924 
     D    58    56 6    59     3    14    34  1072  2303 -14.890  -0.214  -2.860                         
    IL    59    59 3    59     3    16    36  1074  2304  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     11      - A - - -
    ML    60    59 3    62     2    15    34  1072  2303 -19.369  -0.000                                  1.764 -3.365 -1.294 -3.356 
     D    61    59 3    62     2    14    33  1071  2302 -10.599  -0.001                                 
    IL    62    62 3    62     2    15    35  1073  2303  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    14    33  1071  2302                                                 
                                             [ BEGR   46 ]      -      - - - - -
     S    64    63 1    65     3     0     3   160   340 -18.718  -0.000 -17.372                         
    IL    65    65 2    65     3     1     4   162   341  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    154      - G - - -
    ML    66    65 2    68     3     1     3   160   340 -18.718  -0.202  -2.935                          0.392 -1.626  1.041 -1.710 
     D    67    65 2    68     3     0     2   161   341  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     3   161   340  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    155      - U - - -
    ML    69    68 3    71     3     1     2   159   338  -2.877  -0.226  -6.843                         -1.569 -2.958  0.353  1.175 
     D    70    68 3    71     3     0     1   163   342  -2.137  -0.373 -11.594                         
    IL    71    71 3    71     3     1     3   177   356  -0.148  -3.747  -5.437                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    176      - G - - -
    ML    72    71 3    74     3     1     1    26    45 -18.655  -0.269  -2.557                         -3.212 -3.576  1.846 -2.233 
     D    73    71 3    74     3     0     0    25    44 -15.587 -11.100  -0.001                         
    IL    74    74 3    74     3     1     2    36    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    177      - U - - -
    ML    75    74 3    77     3     1     2    25    44 -18.387  -0.000 -17.041                         -0.800 -3.400 -4.025  1.709 
     D    76    74 3    77     3     0     0    24    43 -17.853  -0.000 -12.244                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    178      - C - - -
    ML    78    77 3    80     5     1     2    24    43 -17.651  -0.000 -17.466 -17.678 -18.570         -1.069  1.631 -2.330 -2.132 
     D    79    77 3    80     5     0     0    25    42  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL    80    80 3    80     5     1     1    27    44  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    179    195 G C - -
    MP    81    80 3    85     6     2     2    23    42 -18.579 -18.519  -0.000 -17.295 -17.575 -17.970 -12.560 -11.200 -12.379  1.056 -13.499 -12.977  1.354 -6.645 -4.594  3.290 -13.062 -0.578 -4.105 -12.236 -0.323 -11.343 
    ML    82    80 3    85     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    25    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    84    80 3    85     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1    26    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    25    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    180    194 c g - -
    MP    87    86 6    91     6     2     2    21    40 -18.579 -18.519  -0.000 -17.295 -17.575 -17.970 -12.817 -2.582 -12.780  0.258 -11.915 -13.567  2.454 -12.482 -12.744  1.982 -13.213  1.000  1.199 -10.557 -0.148 -7.395 
    ML    88    86 6    91     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    90    86 6    91     6     0     0    23    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    91    91 5    91     6     1     1    24    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    24    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    181    193 c g - -
    MP    93    92 6    97     6     2     2    19    38 -18.579 -18.519  -0.000 -17.295 -17.575 -17.970 -12.533 -2.340 -12.439  1.297 -12.448 -5.673  2.364 -2.265 -12.658  1.785 -10.373  0.726 -0.841 -7.905  1.046 -2.047 
    ML    94    92 6    97     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     6     1     1    24    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    96    92 6    97     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    97    97 5    97     6     1     1    23    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    182    192 G C - -
    MP    99    98 6   103     6     2     2    17    36 -18.579 -18.519  -0.000 -17.295 -17.575 -17.970 -16.239 -13.147 -17.719  0.341 -18.008 -14.406 -3.495 -17.482 -14.495  3.870 -14.722 -5.620 -12.762 -14.836 -14.828 -16.506 
    ML   100    98 6   103     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   102    98 6   103     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   103   103 5   103     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    22    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    183    191 G C - -
    MP   105   104 6   109     4     2     2    15    34 -17.809 -18.016  -0.000 -16.430                 -16.211 -2.443 -3.679 -10.491 -17.995 -14.419 -12.437 -17.414 -11.083  3.961 -11.103 -2.587 -12.757 -14.844 -14.822 -16.409 
    ML   106   104 6   109     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0    22    40  -4.568  -4.250  -2.265  -0.520                 
    IL   109   109 5   109     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    184      - U - - -
    ML   111   110 6   113     3     1     1    12    31 -18.718  -0.000 -17.372                         -4.082 -6.611 -6.396  1.970 
     D   112   110 6   113     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    185      - U - - -
    ML   114   113 3   116     3     1     1    11    30 -18.718  -0.000 -17.372                         -15.742 -14.514 -5.318  1.991 
     D   115   113 3   116     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    186      - C - - -
    ML   117   116 3   119     3     1     1    10    28 -18.718  -0.000 -17.372                         -6.793  1.992 -13.353 -6.266 
     D   118   116 3   119     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    187      - G - - -
    ML   120   119 3   122     3     1     1     9    27 -18.718  -0.000 -17.372                         -1.062 -14.943  1.816 -13.971 
     D   121   119 3   122     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    188      - A - - -
    ML   123   122 3   125     3     1     1     7    26 -18.718  -0.000 -17.372                          1.995 -14.630 -13.932 -6.143 
     D   124   122 3   125     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    189      - U - - -
    ML   126   125 3   128     3     1     1     6    24 -18.718  -0.018  -6.370                         -0.275 -1.084 -1.886  1.281 
     D   127   125 3   128     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    190      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -5.787 -1.270 -2.588  1.766 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     2    13  1048  2279   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   185     2    13  1048  2279                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     3  1031  2262  -0.047 -16.709  -4.957 -16.757                 
                                             [ MATP   18 ]     12    128 G C - -
    MP   136   135 1   140     6     2     6  1033  2264 -18.532 -18.472  -0.000 -17.248 -17.528 -17.923 -16.337 -13.094 -18.187 -1.407 -18.032 -14.298 -1.154 -17.829 -14.453  3.923 -14.661 -7.676 -12.737 -14.749 -14.813 -17.079 
    ML   137   135 1   140     6     1     1  1016  2246  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     3   670  1900 -15.037 -13.766  -9.675 -13.744  -0.002 -11.958 -9.218  1.641 -10.044 -0.187 
     D   139   135 1   140     6     0     0   958  2188  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1  1026  2257  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1  1025  2256  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     13    127 C G - -
    MP   142   141 6   146     6     2     5  1031  2262  -5.426 -18.472  -0.034 -17.248 -17.528 -17.923 -15.591 -15.872 -14.908 -12.109 -7.074 -15.052  3.936 -14.174 -15.012 -12.081 -15.132 -14.277 -2.230 -15.425 -2.047 -2.122 
    ML   143   141 6   146     6     1     1  1006  2236  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   144   141 6   146     6     1     3   643  1873 -15.037 -13.766  -9.675 -13.744  -0.002 -11.958 -9.274  1.524 -10.267  0.164 
     D   145   141 6   146     6     0     0   940  2171  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     3  1032  2262  -1.394  -0.697  -8.753 -12.490 -13.266 -12.926  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     3  1030  2261  -8.997  -0.004 -12.508 -10.675 -11.781          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     16    125 U A - -
    MP   148   147 6   152     6     2     4  1029  2260 -18.532  -5.161  -0.041 -17.248 -17.528 -17.923 -15.577 -15.815 -14.905 -0.991 -13.267 -15.060 -0.452 -14.176 -15.003 -0.477 -15.129 -14.146  3.809 -15.426 -4.884 -13.808 
    ML   149   147 6   152     6     1     1   985  2215  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   150   147 6   152     6     1     2   600  1831 -15.037 -13.766  -9.675 -13.744  -0.002 -11.958 -6.102  1.111 -2.985  0.764 
     D   151   147 6   152     6     0     0   914  2145  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   152   152 5   152     6     1     1  1021  2251  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     3  1028  2259  -9.259  -0.004 -12.770 -10.938 -12.044          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     17    123 C G - -
    MP   154   153 6   158     4     2     2  1027  2258  -1.322 -17.969  -0.780  -5.838                 -0.085 -15.825 -14.907 -2.322 -5.847 -15.060  3.799 -2.047 -4.074 -12.048 -15.131 -2.278 -9.998 -15.428 -1.268 -13.810 
    ML   155   153 6   158     4     1     1   913  2144  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   156   153 6   158     4     1     1   483  1713 -13.062 -12.091  -0.343  -2.244                  0.155 -7.888 -8.968  1.526 
     D   157   153 6   158     4     0     0   875  2105  -4.568  -4.250  -2.265  -0.520                 
    IL   158   158 5   158     4     1     1  1086  2317  -0.022 -20.064  -6.348  -8.600                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     1    87   184  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     99      - A - - -
    ML   160   159 6   162     3     1     1    86   182 -18.581  -0.016  -6.481                          1.978 -6.588 -13.550 -4.312 
     D   161   159 6   162     3     0     0    83   180 -16.677  -5.645  -0.029                         
    IL   162   162 3   162     3     1     1    86   183  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]    100      - G - - -
    ML   163   162 3   165     3     1     1    85   181 -18.567  -0.033  -5.451                         -3.145 -3.903  1.920 -4.819 
     D   164   162 3   165     3     0     0    83   180 -16.804  -2.007  -0.413                         
    IL   165   165 3   165     3     1     1    85   182  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]    101      - U - - -
    ML   166   165 3   168     3     1     1    84   180 -18.574  -0.229  -2.771                         -2.327  0.124 -4.860  1.420 
     D   167   165 3   168     3     0     0    83   180 -16.744 -12.257  -0.000                         
    IL   168   168 3   168     3     1     1    85   181  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]    102      - U - - -
    ML   169   168 3   171     3     1     3    83   179  -2.082  -0.389 -16.999                         -1.319  0.364 -11.844  1.209 
     D   170   168 3   171     3     0     0    83   180  -1.762  -0.583  -4.735                         
    IL   171   171 3   171     3     1     3    89   186  -0.275  -2.525 -16.634                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]    115      - G - - -
    ML   172   171 3   174     3     1     2    17    32 -18.706  -0.000 -17.360                         -5.299 -7.177  1.977 -4.963 
     D   173   171 3   174     3     0     0    15    31 -13.271  -8.784  -0.003                         
    IL   174   174 3   174     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]    116      - G - - -
    ML   175   174 3   177     3     1     1    16    31 -18.706  -0.000 -17.360                         -13.241 -14.976  2.000 -13.970 
     D   176   174 3   177     3     0     0    15    30 -13.271  -0.007  -7.662                         
    IL   177   177 3   177     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]    117      - U - - -
    ML   178   177 3   180     3     1     1    15    30  -2.048  -0.399 -17.372                         -0.960 -2.559 -1.863  1.605 
     D   179   177 3   180     3     0     0    11    26  -6.174  -1.687  -0.566                         
    IL   180   180 3   180     3     1     1    15    30  -1.754  -0.507 -14.571                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]    122      - A - - -
    ML   181   180 3   183     2     1     1     1     1       *   0.000                                  1.740 -3.028 -1.397 -2.673 
     D   182   180 3   183     2     0     0     0     0       *   0.000                                 
    IL   183   183 3   183     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    30 ]      -      - - - - -
     E   184   183 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   31 ]      -      - - - - -
     S   185   134 1   186     3     0     0    36    62 -18.718  -0.018  -6.370                         
    IL   186   186 2   186     3     1     1    38    64  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]    129      - A - - -
    ML   187   186 2   189     5     1     3    36    62  -4.067  -0.089 -17.449 -17.661 -18.553          1.285 -3.510  0.536 -5.313 
     D   188   186 2   189     5     0     0    35    61 -11.735  -0.006 -10.996  -9.371  -9.284         
    IL   189   189 3   189     5     1     1    36    62 -10.375  -0.002 -12.054 -13.886 -13.160          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]    131    153 g c - -
    MP   190   189 3   194     6     2     3    35    61 -18.579 -18.519  -0.206 -17.295  -2.907 -17.970 -0.913 -3.426 -12.262  1.778 -1.144 -12.917  1.150 -4.216 -1.468  2.055 -12.903  0.710  1.540 -12.187 -9.371 -2.672 
    ML   191   189 3   194     6     1     1    33    59  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   192   189 3   194     6     1     1    34    61  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   193   189 3   194     6     0     0    31    58  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   194   194 5   194     6     1     1    34    60  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1    34    60  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    132    152 c g - -
    MP   196   195 6   200     6     2     4    32    59 -18.373 -18.312  -0.000 -17.089 -17.369 -17.764 -12.676 -12.371 -12.675  1.929 -11.544 -13.517  2.598 -12.196 -12.534  1.083 -13.047 -5.258  1.942 -9.892 -6.439 -2.851 
    ML   197   195 6   200     6     1     1    31    58  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   198   195 6   200     6     1     1    34    61 -17.084 -15.813 -11.722 -15.791  -0.001 -14.005  2.000 -11.759 -11.003 -11.092 
     D   199   195 6   200     6     0     0    30    57  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   200   200 5   200     6     1     1    32    59  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1    32    59  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    133    151 G C - -
    MP   202   201 6   206     6     2     4    30    57 -18.373 -18.312  -0.000 -17.089 -17.369 -17.764 -12.558 -11.540 -12.445 -0.643 -12.277 -13.124  1.865 -12.569 -12.632  3.280 -5.815 -2.732  0.626 -12.419 -1.779 -11.252 
    ML   203   201 6   206     6     1     1    30    57  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   204   201 6   206     6     1     1    33    60 -17.084 -15.813 -11.722 -15.791  -0.001 -14.005  0.423 -2.020  0.218  0.322 
     D   205   201 6   206     6     0     0    29    56  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   206   206 5   206     6     1     1    31    57  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1    30    57  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    134    150 G C - -
    MP   208   207 6   212     6     2     3    28    55 -18.373 -18.312  -0.000 -17.089 -17.369 -17.764 -12.725 -4.896 -12.569 -0.927 -13.686 -4.989 -0.257 -13.251 -7.268  3.678 -13.113  0.525 -1.605 -12.349 -10.756 -11.535 
    ML   209   207 6   212     6     1     1    30    57  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   210   207 6   212     6     1     1    32    59 -17.084 -15.813 -11.722 -15.791  -0.001 -14.005  0.765 -0.174 -0.414 -0.591 
     D   211   207 6   212     6     0     0    28    55  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   212   212 5   212     6     1     1    29    56  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     5     1     1    29    56  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    135    149 A U - -
    MP   214   213 6   218     4     2     2    26    53 -17.602  -4.635  -0.177  -3.733                 -12.336 -12.094 -12.335  3.154 -4.126 -12.955  1.766 -11.943 -12.222  0.812 -12.620 -9.887  0.497 -12.477 -4.060 -1.283 
    ML   215   213 6   218     4     1     1    30    57  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   216   213 6   218     4     1     1    31    58  -2.631 -14.139 -12.006  -0.255                  0.480 -1.086 -0.522  0.523 
     D   217   213 6   218     4     0     0    28    55  -4.568  -4.250  -2.265  -0.520                 
    IL   218   218 5   218     4     1     1    32    59  -1.002  -1.003  -9.576 -13.314                  0.000  0.000  0.000  0.000 
    IR   219   219 6   219     3     1     1    26    52  -2.120  -0.377 -12.345                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]    138      - C - - -
    ML   220   219 6   222     3     1     1    24    51 -18.437  -0.161  -3.246                         -4.144  1.270 -5.568  0.595 
     D   221   219 6   222     3     0     0    22    48 -17.639 -13.152  -0.000                         
    IL   222   222 3   222     3     1     1    26    52  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    139      - U - - -
    ML   223   222 3   225     3     1     1    23    50 -18.276  -0.000 -16.930                         -7.559 -3.608 -2.740  1.912 
     D   224   222 3   225     3     0     0    22    48 -18.215  -1.048  -0.953                         
    IL   225   225 3   225     3     1     1    25    51  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    140      - u - - -
    ML   226   225 3   228     3     1     1    22    49 -18.507  -0.000 -17.161                          0.070 -0.301 -0.050  0.229 
     D   227   225 3   228     3     0     0    21    48 -17.261  -0.069  -4.421                         
    IL   228   228 3   228     3     1     1    23    50  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    141      - a - - -
    ML   229   228 3   231     3     1     1    21    48  -6.338  -0.018 -17.363                          0.026 -0.046  0.023 -0.004 
     D   230   228 3   231     3     0     0    14    40 -12.845  -8.358  -0.005                         
    IL   231   231 3   231     3     1     1    27    53  -1.004  -0.998 -10.779                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    144      - a - - -
    ML   232   231 3   234     3     1     1     7    26 -18.709  -0.000 -17.363                          0.315 -0.143 -0.008 -0.225 
     D   233   231 3   234     3     0     0    10    28 -12.845  -8.358  -0.005                         
    IL   234   234 3   234     3     1     1    18    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    145      - A - - -
    ML   235   234 3   237     3     1     1     6    24 -18.709  -0.150  -3.339                          1.305 -0.774 -0.300 -2.915 
     D   236   234 3   237     3     0     0     9    27 -12.845  -8.358  -0.005                         
    IL   237   237 3   237     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    146      - A - - -
    ML   238   237 3   240     2     1     1     1     1       *   0.000                                  1.503 -0.396 -2.099 -2.544 
     D   239   237 3   240     2     0     0     0     0       *   0.000                                 
    IL   240   240 3   240     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    45 ]      -      - - - - -
     E   241   240 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Phe
ACC   bact-Phe-r2-022416
LENG  76
MAXL  1077
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 18:43:19 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Phe-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Phe-r2-022416.sto
NSEQ  6546
EFFN  18.269413
CKSUM 2778915989
STATS LOCAL MSV       -8.5714  0.71894
STATS LOCAL VITERBI   -9.3797  0.71894
STATS LOCAL FORWARD   -3.5749  0.71894
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50164  1.35021  1.27012  1.43864
          1.38629  1.38629  1.38629  1.38629
          0.00836  5.48191  5.48191  1.46634  0.26236  0.00000        *
      1   2.19244  2.24964  0.38381  2.28616      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04556  5.48191  3.20940  1.46634  0.26236  1.09861  0.40547
      2   2.05329  1.24803  0.69622  2.45161      2 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.00856  5.45796  5.45796  0.59011  0.80803  2.45991  0.08932
      3   1.65337  0.89369  1.62569  1.59615      4 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.00945  5.46708  5.26161  1.46634  0.26236  2.45991  0.08932
      4   1.87934  1.17886  1.66337  1.04930      5 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.07371  5.47757  2.70493  1.46634  0.26236  1.07323  0.41840
      5   1.45442  1.02456  1.68566  1.50423      6 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.00866  5.44623  5.44623  1.46634  0.26236  0.41814  1.07374
      6   1.48429  2.12216  0.69437  1.86967      7 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.03668  3.88024  4.17565  0.35509  1.20768  1.11861  0.39561
      7   1.43729  2.40401  0.71188  1.70730      9 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.00817  5.50459  5.50459  1.46634  0.26236  1.66254  0.21030
      8   4.14709  2.81550  4.65529  0.08905     10 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00814  5.50820  5.50820  1.46634  0.26236  0.37386  1.16498
      9   0.21188  3.16823  2.27300  3.08215     11 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03577  5.52920  3.46820  1.46634  0.26236  1.11872  0.39556
     10   3.36228  3.62830  0.07056  4.97449     12 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00819  5.50264  5.50264  1.46634  0.26236  2.34474  0.10078
     11   4.94321  0.08339  4.85278  2.73228     13 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02979  3.67805  5.50264  0.64068  0.74852  2.34474  0.10078
     12   3.10639  2.31860  2.80400  0.22783     16 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.00819  5.50264  5.50264  1.46634  0.26236  2.34474  0.10078
     13   2.34283  0.34497  2.61633  2.09855     17 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.49163  0.99863  3.91259  4.20061  0.01510  0.41735  1.07526
     14   0.03464  4.67241  4.73971  4.13793     99 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.08368  5.51062  2.57396  1.46634  0.26236  1.78869  0.18294
     15   2.97817  3.62854  0.11036  3.61000    100 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02982  5.43750  3.68768  1.46634  0.26236  1.35241  0.29924
     16   2.56391  1.35658  3.50894  0.45330    101 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.15228  5.44158  1.98834  1.46634  0.26236  0.41347  1.08279
     17   2.07926  1.17660  3.41949  0.62751    102 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.32334  1.30329  5.37392  1.70084  0.20154  0.10422  2.31287
     18   4.16724  5.21727  0.03388  4.39078    115 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00801  5.52467  5.52467  1.46634  0.26236  1.60229  0.22494
     19   4.91170  6.06315  0.01419  5.42591    116 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00801  5.52467  5.52467  1.46634  0.26236  0.51562  0.90915
     20   1.95328  2.65133  2.53093  0.34524    117 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.25965  1.49287  5.53245  0.37303  1.16682  1.09861  0.40547
     21   0.23233  3.01003  2.33054  2.80047    122 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     22   2.05066  2.93535  0.32063  2.38006    123 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.03318  3.55171  5.53248  0.25623  1.48707  1.09861  0.40547
     23   0.25624  2.80110  2.20281  2.90389    125 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.02890  3.70788  5.53247  0.29625  1.36101  1.09861  0.40547
     24   3.29882  4.25151  0.08107  3.62316    127 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     25   4.49861  0.09409  3.51218  3.01906    128 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01913  5.53248  4.20033  1.46634  0.26236  1.09861  0.40547
     26   0.51968  3.33504  1.07639  3.54552    129 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.06446  2.83995  5.52138  0.13172  2.09223  0.42384  1.06284
     27   1.42824  1.57933  1.18582  1.39167    131 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.13900  5.53247  2.07297  1.46634  0.26236  1.09861  0.40547
     28   1.58816  1.02772  1.81934  1.28828    132 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00905  5.40253  5.40253  1.46634  0.26236  3.52050  0.03003
     29   2.27389  1.57458  0.60463  1.93989    133 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00905  5.40253  5.40253  1.46634  0.26236  3.52050  0.03003
     30   2.23091  2.59634  0.27996  2.77728    134 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00905  5.40253  5.40253  1.46634  0.26236  1.73260  0.19459
     31   0.92459  1.38714  1.83181  1.64302    135 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.10207  3.63681  2.64939  0.30647  1.33195  3.36122  0.03531
     32   2.89685  0.58218  3.65174  1.02115    138 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.10975  5.35609  2.31035  1.46634  0.26236  3.78119  0.02306
     33   3.48602  3.08306  3.15642  0.12672    139 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01048  5.25681  5.25681  1.46634  0.26236  0.74109  0.64740
     34   1.28099  1.61088  1.50276  1.20393    140 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00908  5.39964  5.39964  1.46634  0.26236  0.10582  2.29845
     35   1.30656  1.48467  1.45833  1.30915    141 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01943  4.18237  5.52669  0.87859  0.53677  1.49481  0.25398
     36   1.17326  1.53584  1.47283  1.40205    144 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.00799  5.52669  5.52669  1.46634  0.26236  1.49481  0.25398
     37   0.55723  1.91872  1.64882  2.42888    145 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.10332  5.52668  2.36251  1.46634  0.26236  1.49481  0.25398
     38   0.41098  1.74657  2.56393  2.45775    146 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.06799  2.79109  5.43213  0.35878  1.19908  0.07658  2.60741
     39   1.80402  1.91265  1.32491  0.86311    149 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     40   2.60742  0.43935  2.39921  1.65532    150 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     41   2.01554  0.71783  1.46139  1.91713    151 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     42   1.18525  1.98848  1.05429  1.56547    152 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     43   1.36825  1.47237  1.51567  1.21603    153 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     44   1.17731  2.31463  0.74684  2.12670    154 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.10557  5.53247  2.34097  1.46634  0.26236  1.09861  0.40547
     45   1.93947  2.53609  1.29018  0.68951    155 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.18068  1.87518  4.42530  2.27501  0.10847  0.07901  2.57737
     46   2.77905  3.30230  0.18147  2.70213    176 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.21043  5.52553  1.68317  1.46634  0.26236  1.55741  0.23658
     47   1.99551  2.92575  3.35530  0.25421    177 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00979  5.32488  5.32488  1.46634  0.26236  0.04051  3.22648
     48   2.06809  0.34724  2.87415  2.20296    178 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     49   1.82567  1.94896  0.48967  2.48126    179 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     50   2.11972  1.14402  1.11789  1.45060    180 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     51   1.66114  1.23032  1.26148  1.44968    181 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     52   2.56952  4.53909  0.09933  4.92001    182 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     53   3.03078  4.32307  0.08047  4.14880    183 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     54   3.41203  3.63153  4.15036  0.07819    184 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     55   4.05325  3.92826  4.17010  0.05392    185 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     56   4.74948  0.02781  5.23313  4.30978    186 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     57   2.22535  4.86584  0.13568  4.49702    187 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     58   0.01586  5.57280  5.23987  5.01534    188 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     59   1.48411  1.96573  2.32067  0.62543    189 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01913  5.53248  4.20033  1.46634  0.26236  1.09861  0.40547
     60   3.51072  2.26199  3.08604  0.19809    190 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00803  5.52138  5.52138  1.46634  0.26236  0.42384  1.06284
     61   4.36048  0.09292  3.92679  2.87792    191 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     62   5.03378  0.10866  4.44894  2.46798    192 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     63   2.03126  1.51759  0.97166  1.30514    193 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     64   1.73113  1.41615  0.98608  1.57392    194 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00794  5.53248  5.53248  1.46634  0.26236  1.09861  0.40547
     65   3.14688  0.57511  1.70466  1.54865    195 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02041  5.53248  4.12001  1.46634  0.26236  1.09861  0.40547
     66   1.84304  0.83485  2.29482  1.18108    196 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01611  5.52007  4.42479  1.46634  0.26236  1.80928  0.17885
     67   2.30972  0.75800  1.76336  1.34461    197 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.07088  5.51207  2.74281  1.46634  0.26236  2.09138  0.13184
     68   1.68263  1.77654  0.94384  1.36351    198 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02207  5.44982  4.04384  1.46634  0.26236  0.41779  1.07441
     69   1.25865  1.74756  1.06393  1.62624    199 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01765  5.47998  4.31792  1.46634  0.26236  2.48062  0.08740
     70   1.75101  1.80095  0.80953  1.53159    200 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01043  5.47061  5.08808  1.46634  0.26236  1.42052  0.27653
     71   2.47494  0.73774  1.22397  1.94088    201 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00838  5.47879  5.47879  1.46634  0.26236  0.17915  1.80778
     72   2.27266  0.44498  2.28118  1.87105    202 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02871  3.71789  5.51645  0.63014  0.76039  1.09861  0.40547
     73   0.37702  2.35574  2.46966  2.00502    205 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.21518  5.23001  1.66999  1.46634  0.26236  1.09861  0.40547
     74   4.78794  0.03021  5.16176  4.15400    206 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01319  5.02802  5.02802  1.46634  0.26236  3.61534  0.02728
     75   4.78794  0.03021  5.16176  4.15400    207 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01319  5.02802  5.02802  1.46634  0.26236  3.61534  0.02728
     76   0.02294  5.09962  4.70810  4.88572    208 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.00662  5.02145        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Pro
ACC      bact-Pro-r2-022416
STATES   245
NODES    66
CLEN     77
W        1134
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 19:10:31 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Pro-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Pro-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Pro-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     10621
EFFN     10621.000000
CKSUM    2863414592
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -10.1472 0.71895
ECMLC    0.61811    -8.84063     1.44259     1600000      691271  0.001736
ECMGC    0.38805   -25.76892   -14.65609     1600000       29846  0.013402
ECMLI    0.60964    -8.61722     1.73582     1600000      661118  0.001815
ECMGI    0.38184   -24.14813   -12.92404     1600000       29065  0.013762
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1134  2446 -18.301 -19.546  -0.624  -1.509                 
    IL     1     1 2     1     4    16    37  1138  2450  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    16    39  1138  2450  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    213 - A - -
    MR     3     2 3     5     3    20    40  1137  2449 -19.085  -0.000 -17.402                          2.000 -14.710 -13.983 -14.041 
     D     4     2 3     5     3    13    32  1134  2446 -19.294 -14.472  -0.000                         
    IR     5     5 3     5     3    16    38  1137  2449  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    212 - C - -
    MR     6     5 3     8     3    19    39  1136  2448 -19.085  -0.000 -17.402                         -15.842  2.000 -17.092 -13.908 
     D     7     5 3     8     3    13    32  1134  2446 -19.294 -14.472  -0.000                         
    IR     8     8 3     8     3    16    38  1136  2448  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    211 - C - -
    MR     9     8 3    11     3    18    38  1135  2447 -19.085  -0.000 -17.402                         -15.842  2.000 -17.092 -13.908 
     D    10     8 3    11     3    13    32  1134  2446 -19.294  -0.021  -6.081                         
    IR    11    11 3    11     3    13    31  1135  2447  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    210 - A - -
    MR    12    11 3    14     5    17    37  1134  2446  -5.090  -0.289 -18.157  -2.717 -19.261          1.821 -5.472 -2.188 -2.152 
     D    13    11 3    14     5    10    27  1126  2438 -11.354  -6.709  -0.927 -10.412  -1.110         
    IR    14    14 3    14     5    16    34  1133  2445 -10.062  -2.748  -3.789  -0.363 -12.846          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    208 C G - -
    MP    15    14 3    19     6    21    39  1133  2445 -18.988 -18.928  -0.000 -17.704 -17.984 -18.379 -16.044 -16.315 -2.913 -3.503 -5.336 -15.511  3.745 -14.631 -15.466  0.627 -15.588 -14.700 -10.449 -15.882 -0.317 -14.269 
    ML    16    14 3    19     6    16    35  1131  2443 -12.489 -12.835  -1.200  -0.828 -12.685 -10.214  0.433 -6.269  1.390 -5.962 
    MR    17    14 3    19     6    15    33  1132  2444 -18.166 -16.895  -0.055 -16.873  -4.735 -15.086 -4.066  1.545  0.031 -10.575 
     D    18    14 3    19     6    10    25  1119  2431 -14.636 -13.334  -9.131  -9.813  -9.831  -0.006 
    IL    19    19 5    19     6    13    31  1132  2444  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    13    31  1131  2443  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    207 G C - -
    MP    21    20 6    25     6    21    38  1131  2443 -19.260 -19.199  -0.000 -17.976 -18.256 -18.651 -16.823 -4.861 -18.071 -1.833 -18.334 -14.978 -3.334 -18.121 -15.133  3.871 -15.338 -2.152 -1.304 -1.614 -15.182 -17.019 
    ML    22    20 6    25     6    15    34  1130  2442 -11.678 -12.024  -0.769  -1.282 -11.874  -9.403  1.989 -7.094 -6.424 -6.592 
    MR    23    20 6    25     6    12    28  1124  2436 -13.438 -12.167  -8.076 -12.145  -0.735  -1.341 -6.390  1.260 -7.485  0.666 
     D    24    20 6    25     6    10    25  1119  2431 -14.636 -13.334  -9.131  -9.813  -9.831  -0.006 
    IL    25    25 5    25     6    13    31  1130  2442  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    13    31  1130  2442  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    206 G C - -
    MP    27    26 6    31     6    20    36  1129  2441  -4.337 -19.202  -0.073 -17.978 -18.258 -18.653 -16.127  0.302 -16.639 -0.530 -17.737 -15.212 -0.501 -16.836 -15.053  3.690 -15.341 -1.345 -3.862 -15.395 -14.732 -15.429 
    ML    28    26 6    31     6    15    33  1128  2440 -10.436 -10.782  -0.048  -5.191 -10.632  -8.161 -4.660 -4.248 -5.473  1.958 
    MR    29    26 6    31     6    15    31  1125  2437 -12.716 -11.444  -7.353 -11.423  -0.012  -9.636 -6.910  1.989 -7.367 -5.976 
     D    30    26 6    31     6    10    25  1119  2431 -15.672 -14.370 -10.167 -10.849 -10.867  -0.003 
    IL    31    31 5    31     6    16    33  1128  2440  -0.370 -14.101 -12.019 -15.756  -2.146 -16.193  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    13    31  1128  2440  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      9    205 G C - -
    MP    33    32 6    37     6    18    34  1127  2439 -19.191 -19.130  -0.000 -17.907 -18.187 -18.582 -13.156 -6.452 -1.030  0.872 -14.102 -13.571  0.802 -13.664 -13.412  3.177 -13.659  0.906 -0.018 -12.829 -5.640 -11.940 
    ML    34    32 6    37     6    13    30  1125  2437  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    15    30  1124  2436 -16.448 -15.177  -5.030 -15.156  -0.045 -13.369  1.622 -2.742 -1.076 -1.746 
     D    36    32 6    37     6    10    25  1119  2431 -15.672 -14.370  -7.157 -10.849 -10.867  -0.012 
    IL    37    37 5    37     6    13    31  1126  2438  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    13    31  1126  2438  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]     10    204 g c - -
    MP    39    38 6    43     6    16    32  1125  2437 -19.194 -19.133  -0.012 -17.909  -6.933 -18.584 -13.159 -4.163 -12.977  2.434 -14.108 -0.779 -0.704 -13.667 -13.415  2.981 -13.661  0.203 -3.269 -12.831 -2.377 -11.943 
    ML    40    38 6    43     6    13    29  1123  2435  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    14    29  1123  2435 -16.404 -15.133 -11.042 -15.111  -0.001 -13.325 -9.133  1.802 -1.472 -2.730 
     D    42    38 6    43     6    10    25  1119  2431 -15.663 -14.361 -10.158 -10.840 -10.858  -0.003 
    IL    43    43 5    43     6    13    30  1124  2436  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    13    30  1124  2436  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]     11    203 u a - -
    MP    45    44 6    49     6    14    30  1123  2435  -6.264 -19.121  -0.019 -15.098 -18.177 -18.572 -4.030 -13.179 -13.479  2.166 -9.264 -14.322  1.937 -12.997 -13.336 -1.753 -13.850 -6.126  2.642 -7.206 -1.237 -0.652 
    ML    46    44 6    49     6    12    28  1121  2433  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    13    28  1122  2434 -16.606 -15.335  -0.164 -15.313  -3.223 -13.527 -0.784 -8.003 -0.943  1.534 
     D    48    44 6    49     6    10    25  1119  2431 -15.663 -14.361 -10.158 -10.840 -10.858  -0.003 
    IL    49    49 5    49     6    13    29  1122  2434  -9.695  -9.958  -0.004 -11.613 -12.389 -12.049  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    13    28  1122  2434  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     13    202 G C - -
    MP    51    50 6    55     4    12    28  1121  2433 -18.490 -18.697  -0.035  -5.393                 -13.236 -0.684 -13.056  1.503 -14.188 -13.652 -3.045 -5.897 -2.821  3.449 -13.739 -3.680  0.306 -5.244 -11.262 -12.020 
    ML    52    50 6    55     4    11    27  1120  2432  -4.092  -4.275  -0.386  -3.004                  0.058 -0.825  0.651 -0.280 
    MR    53    50 6    55     4    10    26  1119  2431 -11.415 -10.444  -8.311  -0.006                 -7.686  1.993 -8.167 -6.690 
     D    54    50 6    55     4    10    25  1119  2431 -11.086 -10.767  -0.341  -2.256                 
    IL    55    55 5    55     4    11    27  1121  2433  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    11    27  1121  2433  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     14      - U - - -
    ML    57    56 6    59     3    10    26  1119  2431 -19.371  -0.000 -18.025                         -5.614 -12.526 -4.200  1.973 
     D    58    56 6    59     3     9    25  1118  2430 -15.817  -0.001 -10.209                         
    IL    59    59 3    59     3    10    26  1120  2432  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     15      - A - - -
    ML    60    59 3    62     2     9    25  1118  2430 -20.072  -0.000                                  1.624 -5.132 -0.238 -4.568 
     D    61    59 3    62     2     8    24  1117  2429  -8.445  -0.004                                 
    IL    62    62 3    62     2     9    25  1118  2430  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64     8    24  1117  2429                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S    64    63 1    65     3     0     1   158   335 -19.416  -0.076  -4.285                         
    IL    65    65 2    65     3     1     2   161   338  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    157      - G - - -
    ML    66    65 2    68     3     1     3   156   332 -19.340  -0.035  -5.374                          0.215 -1.982  1.058 -0.987 
     D    67    65 2    68     3     0     1   174   350 -16.550 -12.063  -0.000                         
    IL    68    68 3    68     3     1     2   160   336  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    158      - G - - -
    ML    69    68 3    71     3     1     2   153   330  -3.258  -0.159 -17.959                         -1.678 -4.481  1.792 -2.470 
     D    70    68 3    71     3     0     1   174   350  -0.002 -10.364 -11.474                         
    IL    71    71 3    71     3     1     1   174   350  -0.151  -3.935  -4.889                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    179      - G - - -
    ML    72    71 3    74     3     1     1    26    44  -7.221  -0.073  -4.550                         -2.078 -4.907  1.875 -3.993 
     D    73    71 3    74     3     0     0    24    42 -16.733 -12.246  -0.000                         
    IL    74    74 3    74     3     1     2    26    44  -6.835  -0.015  -9.535                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    181      - U - - -
    ML    75    74 3    77     3     1     4    25    43 -19.267  -0.000 -17.921                         -3.451 -1.397 -2.098  1.720 
     D    76    74 3    77     3     0     0    24    42 -17.491  -0.381  -2.107                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   52 ]    182      - C - - -
    ML    78    77 3    80     5     1     4    24    42 -18.316  -0.000 -18.131 -18.343 -19.235         -4.095  1.869 -2.258 -3.654 
     D    79    77 3    80     5     0     0    22    36 -13.342  -9.186 -12.603 -10.978  -0.004         
    IL    80    80 3    80     5     1     1    27    43  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    183    201 G U - -
    MP    81    80 3    85     6     2     5    23    41 -19.244 -19.183  -0.000 -17.960 -18.239 -18.634 -11.141 -8.562 -11.123 -0.392 -15.016 -14.563 -1.819 -14.344 -5.881  2.596 -14.378  3.140 -4.448 -13.770 -12.106 -5.226 
    ML    82    80 3    85     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    25    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    84    80 3    85     6     0     0    19    35 -17.849 -16.548 -12.345 -13.027 -13.044  -0.001 
    IL    85    85 5    85     6     1     1    26    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    25    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    184    200 c g - -
    MP    87    86 6    91     6     2     5    21    39 -19.244 -19.183  -0.000 -17.960 -18.239 -18.634 -13.535 -10.768 -13.535 -0.897 -6.730 -3.703  2.801 -10.899 -4.544  1.938 -10.434 -0.021  1.120 -13.716  0.420 -4.890 
    ML    88    86 6    91     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    89    86 6    91     6     1     1    23    41  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    90    86 6    91     6     0     0    17    35 -17.849 -16.548 -12.345 -13.027 -13.044  -0.001 
    IL    91    91 5    91     6     1     1    24    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    23    40  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    185    199 A U - -
    MP    93    92 6    97     6     2     4    19    37 -19.244 -19.183  -0.011 -17.960  -7.090 -18.634 -3.702 -4.540 -13.072  3.394 -10.574 -13.677 -0.718 -13.717 -13.489  1.797 -13.746 -4.011  0.250 -12.937 -4.858 -12.026 
    ML    94    92 6    97     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     6     1     1    21    40  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    96    92 6    97     6     0     0    16    35 -17.849 -16.548 -12.345 -13.027 -13.044  -0.001 
    IL    97    97 5    97     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    22    40  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    186    198 G C - -
    MP    99    98 6   103     6     2     2    17    35 -19.233 -19.172  -0.009 -17.949 -18.229  -7.272 -14.787 -2.587 -14.735 -0.548 -10.016 -14.680 -2.340 -15.194 -14.524  3.879 -14.784 -8.828 -2.626 -14.348 -3.715 -13.663 
    ML   100    98 6   103     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     1    19    38 -13.578 -12.307  -8.216 -12.286  -0.007 -10.499 -7.910  1.994 -8.400 -6.893 
     D   102    98 6   103     6     0     0    16    34 -17.849 -16.548 -12.345 -13.027 -13.044  -0.001 
    IL   103   103 5   103     6     1     1    22    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    21    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]    187    197 G C - -
    MP   105   104 6   109     4     2     2    14    33 -18.454 -18.661  -0.006  -7.924                 -17.138 -6.743 -19.384 -4.180 -18.779 -14.949 -13.082 -18.873 -15.149  3.988 -15.343 -11.710 -3.847 -15.414 -15.530 -18.435 
    ML   106   104 6   109     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    18    37 -11.603 -10.632  -8.499  -0.005                 -8.777 -7.829 -9.898  1.997 
     D   108   104 6   109     4     0     0    16    34 -13.621 -13.302 -11.318  -0.001                 
    IL   109   109 5   109     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    188      - U - - -
    ML   111   110 6   113     3     1     4    12    30  -7.319  -0.009 -18.011                         -5.428 -15.183 -17.878  1.992 
     D   112   110 6   113     3     0     0    11    29 -16.201  -2.487  -0.283                         
    IL   113   113 3   113     3     1     1    12    30  -6.767  -0.015  -9.467                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    190      - U - - -
    ML   114   113 3   116     3     1     3    11    29 -19.368  -0.000 -18.022                         -13.864 -6.692 -5.860  1.990 
     D   115   113 3   116     3     0     0    11    30 -15.918  -0.305  -2.393                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    191      - C - - -
    ML   117   116 3   119     3     1     2     9    28 -19.407  -0.000 -18.061                         -8.166  1.981 -6.378 -4.804 
     D   118   116 3   119     3     0     0    12    30 -13.527  -9.040  -0.003                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    192      - G - - -
    ML   120   119 3   122     3     1     1     8    26 -19.407  -0.000 -18.061                          0.893 -8.180  1.095 -8.177 
     D   121   119 3   122     3     0     0    10    29 -13.527  -0.006  -7.919                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    193      - A - - -
    ML   123   122 3   125     3     1     1     6    25  -7.380  -0.009 -18.070                          1.996 -8.202 -8.194 -8.196 
     D   124   122 3   125     3     0     0    13    31  -6.174  -1.687  -0.566                         
    IL   125   125 3   125     3     1     1     8    26  -6.765  -0.015  -9.466                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    195      - A - - -
    ML   126   125 3   128     3     1     1     5    24 -19.416  -0.006  -7.962                          1.789 -3.830 -1.399 -3.396 
     D   127   125 3   128     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   64 ]    196      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -7.144 -1.805 -5.474  1.881 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    65 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     2    11  1094  2406   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   188     2    11  1094  2406                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     1    67   134  -0.012  -7.169  -9.787 -17.455                 
                                             [ MATP   18 ]     16     49 G C - -
    MP   136   135 1   140     6     2     4    67   134  -7.213 -19.205  -0.029 -17.981  -6.261 -18.656 -15.370 -13.944 -3.385 -4.660 -17.628 -17.742 -1.179 -15.630 -15.066  3.840 -3.212 -0.306 -12.990 -3.600 -14.890 -3.274 
    ML   137   135 1   140     6     1     1    54   121 -12.996 -13.342  -8.056  -7.751 -13.192  -0.013 -6.887 -8.657  1.994 -7.649 
    MR   138   135 1   140     6     1     1    54   120 -10.983  -9.712  -5.620  -9.690  -0.040  -7.903 -5.113  1.962 -5.626 -4.207 
     D   139   135 1   140     6     0     0    62   128  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1    66   133  -8.838  -9.101  -0.008 -10.756 -11.532 -11.193  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1    66   133  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     18     48 C G - -
    MP   142   141 6   146     6     2     2    65   132 -19.246  -4.170  -0.150  -4.809  -7.071 -15.352 -16.284 -16.554 -15.611 -0.343 -6.888 -7.727  3.822 -14.879 -15.712 -0.763 -15.836 -14.930 -1.128 -16.123 -6.564 -14.512 
    ML   143   141 6   146     6     1     1    71   138  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   144   141 6   146     6     1     1    46   112 -14.543 -13.272  -9.180 -13.250  -0.003 -11.463  1.825 -8.111 -1.153 -7.977 
     D   145   141 6   146     6     0     0    47   114 -16.141 -14.839 -10.636 -11.318 -11.335  -0.002 
    IL   146   146 5   146     6     1     1    65   132  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1    62   128 -10.956  -0.001 -14.467 -12.635 -13.741          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     19     46 G C - -
    MP   148   147 6   152     6     2     4    61   127 -19.183 -19.122  -0.000 -17.899 -18.178 -18.573 -15.655 -6.443 -15.299 -2.183 -10.230 -15.637 -0.071 -14.791 -3.898  3.127 -3.904 -12.662  2.572 -15.666 -11.721 -14.121 
    ML   149   147 6   152     6     1     1    73   139 -15.315 -15.661  -4.852  -0.051 -15.511 -13.041 -11.769 -10.446 -13.267  2.000 
    MR   150   147 6   152     6     1     1    43   109 -15.142 -13.871  -9.779 -13.849  -0.491  -1.800  1.892 -1.832 -8.496 -8.084 
     D   151   147 6   152     6     0     0    45   111 -16.145 -14.843 -10.640 -11.322 -11.340  -0.002 
    IL   152   152 5   152     6     1     1    64   130  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     1    62   128  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     20     45 C G - -
    MP   154   153 6   158     4     2     2    59   125  -5.540 -18.621  -0.032 -11.809                 -0.895 -13.760 -13.955 -1.118 -4.105 -14.695  3.814 -3.878 -13.840 -2.970 -14.308 -5.476 -2.241 -14.175 -2.010 -2.295 
    ML   155   153 6   158     4     1     1    72   138  -0.003 -12.532  -9.099 -11.262                 -9.067 -10.835  1.999 -9.823 
    MR   156   153 6   158     4     1     1    41   107 -12.679  -1.067  -3.738  -1.160                 -7.119 -6.897 -1.293  1.838 
     D   157   153 6   158     4     0     0    40   106 -12.475 -12.156  -1.875  -0.460                 
    IL   158   158 5   158     4     1     1    71   137  -0.400  -2.046 -12.639 -16.376                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     1    38    69  -0.861  -1.154 -13.935                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     27      - A - - -
    ML   160   159 6   162     3     1     2    28    51 -19.392  -0.000 -18.046                          1.936 -4.762 -4.672 -3.350 
     D   161   159 6   162     3     0     0    23    47 -14.924 -10.437  -0.001                         
    IL   162   162 3   162     3     1     1    29    52  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     28      - G - - -
    ML   163   162 3   165     3     1     1    27    50 -19.392  -0.012  -6.889                         -2.924 -5.367  1.943 -14.625 
     D   164   162 3   165     3     0     0    23    46 -14.924  -5.185  -0.040                         
    IL   165   165 3   165     3     1     1    28    51  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     29      - C - - -
    ML   166   165 3   168     3     1     1    26    49 -19.380  -0.134  -3.495                         -1.377  1.068 -4.009  0.543 
     D   167   165 3   168     3     0     0    23    46 -15.482 -10.995  -0.001                         
    IL   168   168 3   168     3     1     1    27    51  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     30      - U - - -
    ML   169   168 3   171     3     1     1    25    48  -6.817  -0.553  -1.692                         -1.930  0.389 -12.856  1.279 
     D   170   168 3   171     3     0     0    23    46 -17.663 -13.176  -0.000                         
    IL   171   171 3   171     3     1     1    25    48  -7.150  -0.012  -9.850                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     32      - U - - -
    ML   172   171 3   174     3     1     1    24    47 -18.712  -0.000 -17.366                         -3.638 -0.759 -4.873  1.720 
     D   173   171 3   174     3     0     0    23    46 -19.462  -0.014  -6.717                         
    IL   174   174 3   174     3     1     1    26    49  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     33      - G - - -
    ML   175   174 3   177     3     1     1    23    46 -19.411  -0.000 -18.065                         -4.380 -15.685  1.973 -5.315 
     D   176   174 3   177     3     0     0    16    39 -12.750  -8.263  -0.005                         
    IL   177   177 3   177     3     1     1    25    48  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     34      - G - - -
    ML   178   177 3   180     3     1     1    22    45 -19.411  -0.000 -18.065                         -4.954 -15.708  1.988 -14.680 
     D   179   177 3   180     3     0     0    14    37 -12.750  -8.263  -0.005                         
    IL   180   180 3   180     3     1     1    24    47  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     35      - U - - -
    ML   181   180 3   183     3     1     1    21    44  -1.451  -0.657 -18.065                         -3.605 -1.107 -2.693  1.722 
     D   182   180 3   183     3     0     0    10    33 -12.750  -8.263  -0.005                         
    IL   183   183 3   183     3     1     1    21    45  -1.154  -1.236  -2.988                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     40      - A - - -
    ML   184   183 3   186     2     1     1     1     1       *   0.000                                  1.889 -3.545 -2.351 -6.110 
     D   185   183 3   186     2     0     0     0     0       *   0.000                                 
    IL   186   186 3   186     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   187   186 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   188   134 1   189     3     0     5  1076  2388 -19.416  -0.000 -18.070                         
    IL   189   189 2   189     3     1     6  1080  2392  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     50      - A - - -
    ML   190   189 2   192     5     1     5  1076  2388 -18.349  -0.187  -5.092  -4.615  -4.286          1.314 -2.359  0.312 -3.709 
     D   191   189 2   192     5     0     2  1092  2404  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   192   192 3   192     5     1     6  1074  2386  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     51    156 C G - -
    MP   193   192 3   197     6     2     8  1068  2380 -19.090 -19.030  -0.045 -17.806  -5.022 -18.481 -0.620 -13.086 -7.336 -0.610 -4.851 -14.229  3.319 -6.872 -5.333 -2.261 -1.211 -3.164  1.694 -13.568 -0.620 -10.637 
    ML   194   192 3   197     6     1     6  1057  2369 -15.063 -15.409 -10.124  -0.002 -15.259 -12.789 -10.460  1.999 -11.115 -9.138 
    MR   195   192 3   197     6     1     7  1061  2373 -16.074 -14.803  -0.002 -14.781  -9.915 -12.995  1.998 -10.765 -8.005 -10.115 
     D   196   192 3   197     6     0     0  1155  2467 -19.015 -17.714 -13.511 -14.193 -14.210  -0.000 
    IL   197   197 5   197     6     1     5  1077  2389  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   198   198 6   198     5     1     5  1080  2392  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     52    155 C G - -
    MP   199   198 6   203     6     2     6  1059  2371 -19.113 -19.052  -0.000 -17.829 -18.108 -18.503 -13.412 -8.251 -13.412 -0.668 -4.527 -14.255  3.187 -12.930 -13.270 -1.411 -10.238 -2.119  2.421 -13.595 -1.981 -11.989 
    ML   200   198 6   203     6     1     5  1056  2368 -15.063 -15.409 -10.124  -0.002 -15.259 -12.789  1.977 -10.124 -4.023 -9.566 
    MR   201   198 6   203     6     1     2  1157  2469 -15.483 -14.212 -10.121 -14.190  -0.002 -12.404 -11.349 -10.056 -12.809  1.999 
     D   202   198 6   203     6     0     0  1155  2467 -19.015 -17.714 -13.511 -14.193 -14.210  -0.000 
    IL   203   203 5   203     6     1     5  1075  2387  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   204   204 6   204     5     1     4  1078  2390  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     53    154 u a - -
    MP   205   204 6   209     6     2     4  1057  2369 -19.113  -7.233  -0.021  -6.959 -18.108 -18.503 -15.168 -15.005 -14.863  0.924 -13.470 -15.328  1.641 -14.257 -10.001  1.631 -15.153 -12.740  2.979 -15.231 -10.132 -10.221 
    ML   206   204 6   209     6     1     4  1055  2367 -15.063 -15.409  -0.002  -9.818 -15.259 -12.789 -11.483 -10.179 -12.956  2.000 
    MR   207   204 6   209     6     1     1  1156  2468 -15.483 -14.212 -10.121 -14.190  -9.324  -0.004 -11.349 -10.056 -12.809  1.999 
     D   208   204 6   209     6     0     0  1155  2467 -19.015 -17.714 -13.511 -14.193 -14.210  -0.000 
    IL   209   209 5   209     6     1     3  1072  2384  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   210   210 6   210     5     1     3  1055  2367  -7.790  -0.010 -11.301  -9.469 -10.575          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     54    152 G C - -
    MP   211   210 6   215     6     2     3  1054  2366 -19.148 -19.087  -0.390  -2.077 -18.144 -18.539 -14.457 -13.216 -14.256 -4.687 -14.388 -14.877  1.774 -14.488 -14.474  3.431 -14.765 -0.731 -5.120 -4.731 -4.415  0.058 
    ML   212   210 6   215     6     1     2  1155  2467 -13.041 -13.388  -8.102  -0.007 -13.237 -10.767 -6.929 -8.700  1.994 -7.691 
    MR   213   210 6   215     6     1     2  1013  2325  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   214   210 6   215     6     0     0  1155  2467 -19.626 -18.325 -14.122 -14.804 -14.821  -0.000 
    IL   215   215 5   215     6     1     2   996  2308  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   216   216 6   216     5     1     2   956  2268  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]     55    151 c g - -
    MP   217   216 6   221     4     2     4   280  1592 -17.987 -18.194  -0.000 -16.608                 -5.220 -12.747 -13.067  1.102 -11.953 -13.904  2.535 -12.600 -12.934  2.443 -13.443 -7.171  0.769 -13.245 -0.182 -11.651 
    ML   218   216 6   221     4     1     1  1154  2466 -15.078  -0.047 -11.827  -4.963                  0.229 -5.933  1.491 -11.892 
    MR   219   216 6   221     4     1     1   977  2289  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   220   216 6   221     4     0     0  1155  2467 -15.048  -0.001 -12.745 -11.000                 
    IL   221   221 5   221     4     1     1  1066  2378  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   222   222 6   222     3     1     5  1155  2467  -0.020  -6.164 -21.214                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     56      - U - - -
    ML   223   222 6   225     3     1     2    12    30 -19.406  -0.000 -18.060                         -0.645  0.303 -7.044  1.084 
     D   224   222 6   225     3     0     0    13    32 -13.719  -9.232  -0.003                         
    IL   225   225 3   225     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     57      - U - - -
    ML   226   225 3   228     3     1     1    11    29 -19.406  -0.000 -18.060                         -1.008 -4.751 -13.259  1.793 
     D   227   225 3   228     3     0     0    12    31 -13.719  -0.005  -8.111                         
    IL   228   228 3   228     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     58      - g - - -
    ML   229   228 3   231     3     1     1     9    28 -19.416  -0.000 -18.070                         -0.027 -0.512  0.554 -0.236 
     D   230   228 3   231     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   231   231 3   231     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     59      - g - - -
    ML   232   231 3   234     3     1     1     8    27 -19.416  -0.000 -18.070                         -0.497 -0.498  0.572  0.134 
     D   233   231 3   234     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   234   234 3   234     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     60      - g - - -
    ML   235   234 3   237     3     1     1     7    25 -19.416  -0.000 -18.070                         -0.130 -0.498  0.457  0.008 
     D   236   234 3   237     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   237   237 3   237     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     61      - G - - -
    ML   238   237 3   240     3     1     1     5    24 -19.416  -0.000 -18.070                         -1.539 -0.773  1.612 -6.064 
     D   239   237 3   240     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   240   240 3   240     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     62      - A - - -
    ML   241   240 3   243     2     1     1     1     1       *   0.000                                  1.016 -2.296 -0.165 -0.180 
     D   242   240 3   243     2     0     0     0     0       *   0.000                                 
    IL   243   243 3   243     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   244   243 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Pro
ACC   bact-Pro-r2-022416
LENG  77
MAXL  1105
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 19:10:31 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Pro-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Pro-r2-022416.sto
NSEQ  10621
EFFN  11.189985
CKSUM 2863414592
STATS LOCAL MSV       -8.5614  0.71895
STATS LOCAL VITERBI   -9.3039  0.71895
STATS LOCAL FORWARD   -3.3951  0.71895
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52859  1.35492  1.22313  1.46584
          1.38629  1.38629  1.38629  1.38629
          0.15022  4.87219  2.02631  1.46634  0.26236  0.00000        *
      1   2.76707  0.43156  2.04362  1.84454      1 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.01764  4.73961  4.73961  1.46634  0.26236  0.10990  2.26263
      2   2.36971  3.13618  0.23226  2.65493      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01513  4.89187  4.89187  1.46634  0.26236  1.09861  0.40547
      3   1.86150  2.68591  0.32664  2.89941      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.05479  3.08318  4.89187  1.32394  0.30936  1.09861  0.40547
      4   1.71038  2.17959  0.50295  2.28896      9 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.05652  4.89187  3.04823  1.46634  0.26236  1.09861  0.40547
      5   1.29890  2.36972  0.58583  2.56375     10 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02267  4.85115  4.22689  1.46634  0.26236  2.11861  0.12806
      6   1.48676  1.29855  2.11174  0.96775     11 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.02687  3.98256  4.84435  0.70140  0.68496  0.28340  1.39925
      7   1.54050  2.80700  0.47520  2.26739     13 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03553  4.88989  3.59791  1.46634  0.26236  1.18388  0.36541
      8   3.33888  3.33787  3.57200  0.10435     14 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01542  4.87324  4.87324  1.46634  0.26236  0.41337  1.08299
      9   0.32093  3.44552  1.59974  3.20169     15 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01597  4.89935  4.78059  1.46634  0.26236  1.09861  0.40547
     10   2.17095  2.68749  0.28974  2.66760     16 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.03787  4.33842  3.72537  0.90856  0.51601  1.13979  0.38550
     11   2.64729  0.29742  2.62824  2.16964     18 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02162  4.88163  4.28318  1.46634  0.26236  1.67858  0.20658
     12   2.24444  2.04754  0.74468  1.23762     19 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01538  4.87539  4.87539  1.46634  0.26236  1.82087  0.17660
     13   2.23703  0.48751  2.25475  1.74771     20 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.06363  2.92245  4.84725  1.42280  0.27581  0.96873  0.47733
     14   0.10462  3.53073  3.51301  3.21278     27 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01523  4.88539  4.88539  1.46634  0.26236  1.58127  0.23031
     15   3.09929  4.26345  0.07756  4.16849     28 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.02239  4.88539  4.22748  1.46634  0.26236  1.53254  0.24333
     16   1.99323  0.76905  2.96227  1.05385     29 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.09330  4.87872  2.50752  1.46634  0.26236  1.74780  0.19135
     17   2.22210  1.19623  3.23604  0.59790     30 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.32471  4.16809  1.34025  0.85308  0.55530  2.73775  0.06690
     18   2.57899  1.91278  3.13862  0.31042     32 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02225  4.50954  4.50954  1.46634  0.26236  0.05340  2.95652
     19   3.75151  5.07838  0.04425  4.29953     33 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01506  4.89630  4.89630  1.46634  0.26236  1.22638  0.34722
     20   4.02061  5.39382  0.03071  4.85918     34 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01506  4.89630  4.89630  1.46634  0.26236  1.22638  0.34722
     21   2.82534  2.11510  2.96907  0.26300     35 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.38657  1.16110  4.89631  0.48672  0.95358  1.22638  0.34722
     22   0.14902  3.21471  2.73796  3.39394     40 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04722  3.49046  4.15839  1.34347  0.30238  1.19823  0.35915
     23   1.90481  2.49459  0.43022  2.13496     45 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04563  4.88833  3.29493  1.46634  0.26236  0.97311  0.47466
     24   1.31898  0.79637  1.90564  2.01813     46 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.06465  2.90254  4.86369  0.26096  1.47103  0.44765  1.01924
     25   2.33712  2.72609  0.27886  2.50993     48 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01510  4.89353  4.89353  1.46634  0.26236  1.32961  0.30731
     26   3.02422  0.36619  2.45715  1.75820     49 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01510  4.89353  4.89353  1.46634  0.26236  0.75324  0.63646
     27   0.56622  2.57171  1.28157  2.54687     50 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09641  4.89935  2.47152  1.46634  0.26236  1.09861  0.40547
     28   1.93683  0.83992  1.95730  1.26282     51 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.04151  4.81923  3.42375  1.46634  0.26236  0.87122  0.54204
     29   2.29514  0.79761  2.15898  1.09840     52 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01608  4.83160  4.83160  1.46634  0.26236  2.46738  0.08862
     30   1.98895  1.36339  1.59403  0.90569     53 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.01608  4.83160  4.83160  1.46634  0.26236  2.46738  0.08862
     31   2.17365  1.79829  0.49146  2.21710     54 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01608  4.83160  4.83160  1.46634  0.26236  2.46738  0.08862
     32   1.74907  1.26351  1.11636  1.53279     55 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.02262  4.83160  4.24111  1.46634  0.26236  0.18586  1.77424
     33   1.70097  1.22954  2.97047  0.74700     56 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01511  4.89334  4.89334  1.46634  0.26236  1.33628  0.30492
     34   2.14816  3.09875  3.74595  0.20508     57 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01511  4.89334  4.89334  1.46634  0.26236  0.74579  0.64314
     35   1.31386  1.71415  1.20227  1.38393     58 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01501  4.89935  4.89935  1.46634  0.26236  1.09861  0.40547
     36   1.47250  1.70251  1.19659  1.25107     59 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01501  4.89935  4.89935  1.46634  0.26236  1.09861  0.40547
     37   1.34754  1.70136  1.26177  1.29268     60 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01501  4.89935  4.89935  1.46634  0.26236  1.09861  0.40547
     38   2.10110  2.09402  0.35314  2.95639     61 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01501  4.89935  4.89935  1.46634  0.26236  1.09861  0.40547
     39   0.83974  2.23105  1.56394  1.38050     62 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.30881  1.37741  4.30887  4.25078  0.01436  1.09861  0.40547
     40   1.72129  1.30503  0.99617  1.71086    151 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.08436  4.89334  2.61182  1.46634  0.26236  1.33628  0.30492
     41   2.80842  0.57248  1.70960  1.63663    152 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.04898  4.31478  3.36874  0.94773  0.49040  0.95613  0.48512
     42   0.99980  1.67489  1.26981  1.80891    154 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.01611  4.82957  4.82957  1.46634  0.26236  2.48867  0.08667
     43   1.22110  2.36269  0.73160  2.04182    155 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01611  4.82957  4.82957  1.46634  0.26236  2.48867  0.08667
     44   1.34421  2.23024  0.73283  1.88912    156 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01611  4.82957  4.82957  1.46634  0.26236  1.03224  0.44038
     45   1.26729  2.28552  0.81698  1.74341    157 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01573  4.85553  4.85057  1.46634  0.26236  0.25935  1.47644
     46   2.19711  3.24150  0.24974  2.64830    158 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.17176  1.89467  4.89933  2.21589  0.11547  1.09531  0.40712
     47   2.46311  3.55750  0.16886  3.17748    179 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.10812  4.36400  2.41068  0.92782  0.50321  1.09861  0.40547
     48   2.69425  2.21349  2.71270  0.27875    181 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01637  4.81347  4.81347  1.46634  0.26236  0.39271  1.12462
     49   3.41159  0.13892  3.13664  2.93208    182 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01531  4.88008  4.88008  1.46634  0.26236  1.71588  0.19821
     50   2.19368  3.11824  0.22001  3.17617    183 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01531  4.88008  4.88008  1.46634  0.26236  1.71588  0.19821
     51   2.22890  1.00623  1.34655  1.32192    184 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01531  4.88008  4.88008  1.46634  0.26236  1.71588  0.19821
     52   0.83743  2.40543  1.02426  2.13800    185 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.02154  4.88008  4.28959  1.46634  0.26236  1.71588  0.19821
     53   2.13136  2.97602  0.26009  2.82432    186 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02088  4.87395  4.34087  1.46634  0.26236  1.85104  0.17088
     54   3.68946  4.84276  0.04463  4.53022    187 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01896  4.86855  4.50075  1.46634  0.26236  1.95595  0.15249
     55   3.70133  3.73928  4.41368  0.06248    188 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02084  4.34971  4.86513  0.94369  0.49297  1.42643  0.27465
     56   3.63487  3.45903  3.96826  0.07986    190 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01545  4.87132  4.87132  1.46634  0.26236  0.51582  0.90885
     57   4.27867  0.05261  4.48031  3.64738    191 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89409  4.89409  1.46634  0.26236  1.30946  0.31466
     58   0.77302  3.87953  0.71177  3.61396    192 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89409  4.89409  1.46634  0.26236  0.77638  0.61631
     59   0.02529  4.98430  4.60903  4.80806    193 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02012  4.38428  4.89935  0.94397  0.49279  1.09861  0.40547
     60   0.22574  3.10275  2.28646  2.89096    195 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01842  4.89935  4.52811  1.46634  0.26236  1.09861  0.40547
     61   3.34390  2.49048  3.72278  0.15354    196 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.04016  4.89600  3.44538  1.46634  0.26236  0.86700  0.54509
     62   4.52764  0.05613  4.69156  3.36382    197 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01539  4.87472  4.87472  1.46634  0.26236  1.30201  0.31743
     63   3.08315  0.28989  2.76409  1.94628    198 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01531  4.88008  4.88008  1.46634  0.26236  1.71588  0.19821
     64   2.28879  1.10731  2.24515  0.77164    199 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01531  4.88008  4.88008  1.46634  0.26236  1.71588  0.19821
     65   1.63366  1.54246  0.84010  1.83717    200 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01531  4.88008  4.88008  1.46634  0.26236  1.71588  0.19821
     66   3.40230  0.90810  2.96149  0.67007    201 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.01761  4.87805  4.62083  1.46634  0.26236  0.44568  1.02273
     67   2.38196  0.50545  2.63054  1.45948    202 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01508  4.89516  4.89516  1.46634  0.26236  1.18933  0.36301
     68   1.15243  2.26426  1.16157  1.31964    203 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.01508  4.89518  4.89518  1.46634  0.26236  1.19112  0.36224
     69   2.85809  0.67400  2.35461  1.08463    204 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01508  4.89516  4.89516  1.46634  0.26236  1.19112  0.36224
     70   2.38545  0.66852  1.95532  1.37056    205 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89421  4.89421  1.46634  0.26236  1.19112  0.36224
     71   3.08798  0.33288  2.54188  1.83991    206 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01511  4.89285  4.89285  1.46634  0.26236  0.93589  0.49797
     72   2.91985  0.27091  2.91448  2.04682    207 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01508  4.89503  4.89503  1.46634  0.26236  1.09861  0.40547
     73   2.19511  1.84526  0.44215  2.43028    208 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.49870  4.89503  0.43787  1.03680  1.09861  0.40547
     74   0.20327  3.28364  2.64296  2.58628    210 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.11797  4.64819  2.28577  1.46634  0.26236  1.09861  0.40547
     75   4.40762  0.04423  4.84245  3.76393    211 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02133  4.55155  4.55155  1.46634  0.26236  2.53502  0.08258
     76   4.40762  0.04423  4.84245  3.76393    212 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02133  4.55155  4.55155  1.46634  0.26236  2.53502  0.08258
     77   0.03543  4.65836  4.28318  4.46308    213 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01072  4.54095        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-SeC
ACC      bact-SeC-043016
STATES   304
NODES    77
CLEN     95
W        111
ALPH     RNA
RF       yes
CONS     yes
MAP      yes
DATE     Sat Apr 30 15:16:09 2016
COM      [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/bact-SeC-043016.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     59
EFFN     59.000000
CKSUM    3815334794
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -9.4186 0.71863
ECMLC    0.76623    -6.89800     1.57419     1600000      791504  0.001516
ECMGC    0.34091   -49.28657   -35.94677     1600000       37763  0.010592
ECMLI    0.70546    -7.59235     1.57579     1600000      772822  0.001553
ECMGI    0.36343   -43.70338   -31.27906     1600000       36564  0.010940
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     0     1   111   129 -10.854 -12.100  -0.005  -8.553                 
    IL     1     1 2     1     4    22    55   112   131  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    24    57   113   131  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    109 - A - *
    MR     3     2 3     5     3    28    61   111   129 -12.268  -0.001 -10.586                          1.970 -4.008 -6.760 -6.653 
     D     4     2 3     5     3    18    50   109   128  -6.390  -1.568  -0.620                         
    IR     5     5 3     5     3    23    56   112   130  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    108 - C - *
    MR     6     5 3     8     3    27    60   110   128 -12.268  -0.001 -10.586                         -7.477  1.993 -7.951 -6.500 
     D     7     5 3     8     3    17    49   108   127  -6.390  -1.568  -0.620                         
    IR     8     8 3     8     3    22    55   111   129  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    107 - C - *
    MR     9     8 3    11     3    27    59   109   127 -12.268  -0.001 -10.586                         -7.477  1.993 -7.951 -6.500 
     D    10     8 3    11     3    17    48   107   126  -6.390  -1.568  -0.620                         
    IR    11    11 3    11     3    22    55   110   128  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    106 - G - +
    MR    12    11 3    14     5    26    58   108   126 -10.914  -0.003 -10.730 -10.942 -11.834         -6.593 -8.359  1.993 -7.354 
     D    13    11 3    14     5    16    47   106   125  -5.352  -0.707  -2.978  -4.409  -2.404         
    IR    14    14 3    14     5    20    52   108   127  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    105 G C = =
    MP    15    14 3    19     6    26    58   107   125 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -9.653 -6.516 -11.223 -0.617 -11.382 -7.757 -5.798 -10.961 -7.868  3.929 -8.088 -4.403 -6.133 -8.193 -8.197 -10.039 
    ML    16    14 3    19     6    18    49   105   124  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    18    49   105   124  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    18    14 3    19     6    14    44   103   121  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    19    19 5    19     6    19    51   107   125  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    20    51   106   125  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    104 G C = =
    MP    21    20 6    25     6    26    56   105   123 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883  3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 
    ML    22    20 6    25     6    17    49   103   122  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    23    20 6    25     6    17    48   103   122  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    24    20 6    25     6    13    44   101   119  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    25    25 5    25     6    19    50   104   123  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    19    51   104   123  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    103 A U = =
    MP    27    26 6    31     6    24    54   103   121 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -7.805 -6.475 -7.943  3.398 -9.490 -10.295 -0.786 -8.013 -7.589  2.239 -8.210 -3.798 -5.131 -8.950 -6.845 -6.587 
    ML    28    26 6    31     6    17    48   101   120  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    29    26 6    31     6    17    48   101   120  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    30    26 6    31     6    13    43    99   117  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    31    31 5    31     6    18    50   102   121  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    19    50   102   121  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    102 A U = =
    MP    33    32 6    37     6    22    52   101   119 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -7.870 -6.531 -8.065  3.645 -10.203 -11.351 -5.660 -8.108 -7.626  0.964 -8.296  0.538 -5.587 -9.368 -7.491 -6.664 
    ML    34    32 6    37     6    17    47    99   118  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    16    47    99   118  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    36    32 6    37     6    13    43    97   115  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    37    37 5    37     6    18    49   101   119  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    18    49   100   119  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      5    101 G C = =
    MP    39    38 6    43     6    20    50    99   117 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -9.443 -6.509 -10.626 -0.355 -11.243 -7.827 -5.760 -10.498 -7.848  3.888 -8.093 -1.518 -6.063 -8.224 -8.109 -9.375 
    ML    40    38 6    43     6    16    47    97   116  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    16    46    97   116  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    42    38 6    43     6    12    42    95   114  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    43    43 5    43     6    17    48    99   117  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    18    48    98   117  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      6    100 u a = =
    MP    45    44 6    49     6    18    48    97   115 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.499 -6.143 -6.475  2.170 -5.387 -7.288  1.958 -6.027 -6.359  1.439 -6.852 -3.723  2.185 -6.667 -2.861 -5.085 
    ML    46    44 6    49     6    15    46    96   115  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    15    45    96   115  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    48    44 6    49     6    12    42    94   113  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    49    49 5    49     6    16    47    97   115  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    17    47    96   115  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      7     99 G C = =
    MP    51    50 6    55     6    16    46    95   113 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.129 -4.886 -5.967  1.372 -6.473 -6.585  1.057 -6.424 -6.313  3.156 -6.602 -2.521  0.772 -5.865 -1.453 -4.878 
    ML    52    50 6    55     6    14    45    95   114  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     6    14    44    95   114  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    54    50 6    55     6    12    42    93   112  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    55    55 5    55     6    15    45    95   114  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     5    15    45    94   113  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   12 ]      8     98 c g = =
    MP    57    56 6    61     4    14    44    93   111 -11.053 -11.260  -0.023  -6.045                 -4.199 -4.344 -4.372  1.743 -4.157 -5.222  2.289 -1.061  1.349 -0.330 -0.220 -2.795  0.533 -0.070 -2.182 -3.532 
    ML    58    56 6    61     4    13    43    95   113  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    59    56 6    61     4    13    43    94   113  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    60    56 6    61     4    12    42    93   112  -4.568  -4.250  -2.265  -0.520                 
    IL    61    61 5    61     4    14    44    96   115  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR    62    62 6    62     3    14    44    95   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]      9      - a - + -
    ML    63    62 6    65     3    12    43    90   109 -11.948  -0.001 -10.603                          0.916 -1.542 -0.005 -0.370 
     D    64    62 6    65     3    11    41    90   108  -7.786  -0.369  -2.178                         
    IL    65    65 3    65     3    13    43    94   113  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   14 ]     10      - U - + -
    ML    66    65 3    68     2    11    42    89   108 -12.610  -0.000                                 -1.694 -1.716 -2.641  1.690 
     D    67    65 3    68     2    10    41    89   107  -8.445  -0.004                                 
    IL    68    68 3    68     2    12    42    91   109  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    15 ]      -      - - - - -
     B    69    68 3    70   179    10    41    88   107                                                 
                                             [ BEGL   16 ]      -      - - - - -
     S    70    69 1    71     1     0     7    46    65   0.000                                         
                                             [ BIF    17 ]      -      - - - - -
     B    71    70 1    72   122     0     7    46    65                                                 
                                             [ BEGL   18 ]      -      - - - - -
     S    72    71 1    73     4     0     0    27    46  -0.005 -10.033  -9.440 -10.080                 
                                             [ MATP   19 ]     11     28 C G = =
    MP    73    72 1    77     6     2     2    27    46 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.624 -6.027 -6.597  1.013 -5.740 -7.460  3.194 -6.272 -6.511  1.545 -6.996 -0.499 -1.495 -6.794 -0.470 -5.242 
    ML    74    72 1    77     6     1     1    26    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    75    72 1    77     6     1     1    26    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    76    72 1    77     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    77    77 5    77     6     1     1    27    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    78    78 6    78     5     1     1    27    45  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     12     27 G C = =
    MP    79    78 6    83     6     2     2    25    44 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.093 -4.726 -5.917  0.560 -7.035 -6.506  1.043 -6.595 -6.331  3.433 -6.583 -0.132 -2.374 -5.773 -1.366 -4.879 
    ML    80    78 6    83     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    81    78 6    83     6     1     1    24    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    82    78 6    83     6     0     0    22    40  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    83    83 5    83     6     1     1    25    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    84    84 6    84     5     1     1    25    43  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     13     26 u g = =
    MP    85    84 6    89     6     2     2    23    42  -2.114 -11.892  -0.382 -10.668 -10.948 -11.343 -6.193 -5.480 -6.139  0.053 -5.501 -6.891  1.097 -5.991 -6.179  2.265 -6.618  0.186  0.927 -6.201  2.266 -4.860 
    ML    86    84 6    89     6     1     1    22    41  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    87    84 6    89     6     1     1    22    41  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    88    84 6    89     6     0     0    20    39  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    89    89 5    89     6     1     1    22    40  -6.690  -6.953  -0.035  -8.608  -9.384  -9.045  0.000  0.000  0.000  0.000 
    IR    90    90 6    90     5     1     1    22    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   22 ]     15     25 c g = =
    MP    91    90 6    95     6     2     2    21    39 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -5.911 -5.290 -5.895  1.503 -5.399 -6.655  2.553 -5.851 -5.958  1.913 -6.410 -0.761 -0.626 -1.614  0.840 -4.702 
    ML    92    90 6    95     6     1     1    21    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    93    90 6    95     6     1     1    21    40  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    94    90 6    95     6     0     0    19    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    95    95 5    95     6     1     1    21    40  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    96    96 6    96     5     1     1    21    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   23 ]     16     24 c g = =
    MP    97    96 6   101     6     2     2    19    37  -5.397 -11.892  -0.037 -10.668 -10.948 -11.343 -4.678 -4.760 -1.078 -0.564 -4.449 -5.679  2.540 -4.924 -4.841  0.305 -0.360  0.088  1.568 -4.980  1.301 -1.808 
    ML    98    96 6   101     6     1     1    21    39  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    99    96 6   101     6     1     1    20    39  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   100    96 6   101     6     0     0    19    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   101   101 5   101     6     1     1    19    37  -3.989  -4.252  -0.242  -5.907  -6.683  -6.343  0.000  0.000  0.000  0.000 
    IR   102   102 6   102     5     1     1    19    38  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   24 ]     18     23 C G = =
    MP   103   102 6   107     4     2     2    17    35 -11.053 -11.260  -0.003  -9.674                 -11.491 -11.735 -8.283 -8.627 -6.530 -7.823  3.996 -10.677 -11.490 -8.477 -7.850 -10.546 -6.497 -11.672 -7.488 -10.262 
    ML   104   102 6   107     4     1     1    20    39  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   105   102 6   107     4     1     1    20    38  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   106   102 6   107     4     0     0    19    37  -4.568  -4.250  -2.265  -0.520                 
    IL   107   107 5   107     4     1     1    22    40  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   108   108 6   108     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     19      - U - + -
    ML   109   108 6   111     3     1     1    13    32 -11.969  -0.001 -10.623                         -6.041  0.969 -7.095  1.014 
     D   110   108 6   111     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   111   111 3   111     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     20      - G - + -
    ML   112   111 3   114     3     1     1    12    30 -11.969  -0.001 -10.623                         -6.593 -8.359  1.993 -7.354 
     D   113   111 3   114     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   114   114 3   114     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     21      - G - + -
    ML   115   114 3   117     3     1     1    10    29 -11.969  -0.001 -10.623                         -6.593 -8.359  1.993 -7.354 
     D   116   114 3   117     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   117   117 3   117     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     22      - U - + -
    ML   118   117 3   120     2     1     1     1     1       *   0.000                                 -8.197 -7.345 -9.248  1.996 
     D   119   117 3   120     2     0     0     0     0       *   0.000                                 
    IL   120   120 3   120     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    29 ]      -      - - - - -
     E   121   120 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   30 ]      -      - - - - -
     S   122    71 1   123     3     0     0    29    48 -11.969  -0.001 -10.623                         
    IL   123   123 2   123     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   31 ]     29      - C - + -
    ML   124   123 2   126     5     1     1    29    48 -10.914  -0.036  -5.405 -10.942 -11.834         -2.636  1.073  0.383 -1.216 
     D   125   123 2   126     5     0     0    28    46  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   126   126 3   126     5     1     1    29    48  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]     30     48 C G = =
    MP   127   126 3   131     6     2     2    28    47 -11.921  -3.450  -0.141 -10.637 -10.917 -11.312 -6.761 -6.317 -6.748 -0.863 -5.707 -7.652  3.613 -6.295 -6.589 -0.002 -7.097 -0.513 -0.558 -7.026 -3.186 -0.666 
    ML   128   126 3   131     6     1     1    27    45  -7.852  -8.198  -0.316  -2.607  -8.048  -5.578 -1.131 -2.274  1.594 -1.658 
    MR   129   126 3   131     6     1     1    27    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   130   126 3   131     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   131   131 5   131     6     1     1    28    46  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   132   132 6   132     5     1     1    27    46  -4.678  -0.090  -8.189  -6.357  -7.462          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     31     45 c g = =
    MP   133   132 6   137     6     2     2    26    44 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.887 -6.618 -6.807  0.775 -5.597 -7.535  2.857 -6.291 -6.696 -0.696 -7.155 -4.220  2.618 -7.041 -3.102 -5.428 
    ML   134   132 6   137     6     1     1    25    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   135   132 6   137     6     1     1    25    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   136   132 6   137     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   137   137 5   137     6     1     1    26    44  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   138   138 6   138     5     1     1    25    44  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     32     44 G C = =
    MP   139   138 6   143     6     2     2    24    42 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -9.575 -6.515 -10.984 -0.027 -11.334 -7.785 -5.789 -10.774 -7.862  3.898 -8.092 -4.386 -6.112 -8.208 -8.170 -9.765 
    ML   140   138 6   143     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   141   138 6   143     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   142   138 6   143     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   143   143 5   143     6     1     1    24    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   144   144 6   144     5     1     1    24    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     33     43 G C = =
    MP   145   144 6   149     6     2     2    22    40 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883  3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 
    ML   146   144 6   149     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   147   144 6   149     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   148   144 6   149     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   149   149 5   149     6     1     1    23    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   150   150 6   150     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     34     42 a u = =
    MP   151   150 6   155     4     2     2    20    38 -11.053 -11.260  -0.003  -9.674                 -7.875 -6.583 -8.018  2.967 -9.183 -10.534 -4.704 -2.228 -7.630  1.009 -8.262 -3.888  2.536 -9.161 -6.640 -6.642 
    ML   152   150 6   155     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   153   150 6   155     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   154   150 6   155     4     0     0    22    40  -4.568  -4.250  -2.265  -0.520                 
    IL   155   155 5   155     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   156   156 6   156     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     35      - C - + -
    ML   157   156 6   159     3     1     1    17    36 -11.969  -0.001 -10.623                         -6.606  1.827 -7.201 -1.204 
     D   158   156 6   159     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   159   159 3   159     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     36      - U - + -
    ML   160   159 3   162     3     1     1    16    34 -11.969  -0.001 -10.623                         -8.197 -7.345 -9.248  1.996 
     D   161   159 3   162     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   162   162 3   162     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     37      - U - * -
    ML   163   162 3   165     3     1     1    15    33 -11.969  -0.001 -10.623                         -8.197 -7.345 -9.248  1.996 
     D   164   162 3   165     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   165   165 3   165     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     38      - C - * -
    ML   166   165 3   168     3     1     1    13    32 -11.969  -0.001 -10.623                         -7.477  1.993 -7.951 -6.500 
     D   167   165 3   168     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     39      - A - * -
    ML   169   168 3   171     3     1     1    12    30 -11.969  -0.001 -10.623                          1.994 -8.093 -7.361 -7.495 
     D   170   168 3   171     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   171   171 3   171     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     40      - A - + -
    ML   172   171 3   174     3     1     1    10    29 -11.969  -0.001 -10.623                          1.994 -8.093 -7.361 -7.495 
     D   173   171 3   174     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   174   174 3   174     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     41      - A - + -
    ML   175   174 3   177     2     1     1     1     1       *   0.000                                  1.957 -3.403 -6.583 -6.404 
     D   176   174 3   177     2     0     0     0     0       *   0.000                                 
    IL   177   177 3   177     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    44 ]      -      - - - - -
     E   178   177 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   45 ]      -      - - - - -
     S   179    69 1   180     3     0     9    53    71 -11.969  -0.033  -5.504                         
    IL   180   180 2   180     3     1    11    58    77  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]     49      - U - + -
    ML   181   180 2   183     2     1    10    53    71  -2.748  -0.233                                 -1.623 -2.634 -1.279  1.633 
     D   182   180 2   183     2     0     8    52    70  -8.698  -0.003                                 
    IL   183   183 3   183     2     1    10    53    71  -2.556  -0.269                                  0.000  0.000  0.000  0.000 
                                             [ BIF    47 ]      -      - - - - -
     B   184   183 3   185   247     0     8    52    70                                                 
                                             [ BEGL   48 ]      -      - - - - -
     S   185   184 1   186     4     0     0    33    50  -0.064  -4.599  -9.440 -10.080                 
                                             [ MATP   49 ]     52     79 u g = =
    MP   186   185 1   190     6     2     2    33    50 -11.895 -11.834  -0.112  -3.774 -10.891 -11.286 -3.314 -3.527 -1.907 -0.327 -3.502 -4.363  0.281 -3.861 -0.457  1.216 -2.263  1.059  1.517 -1.526  1.987 -0.302 
    ML   187   185 1   190     6     1     1    32    49  -8.489  -8.835  -0.195  -3.244  -8.685  -6.214 -2.304  1.746 -3.135 -1.606 
    MR   188   185 1   190     6     1     1    32    49  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   189   185 1   190     6     0     0    30    46  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   190   190 5   190     6     1     1    33    50  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   191   191 6   191     5     1     1    33    50  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   50 ]     53     78 g c = =
    MP   192   191 6   196     6     2     2    31    48  -1.956 -11.787  -0.434 -10.564 -10.844 -11.239 -5.908 -0.637 -5.728  1.218 -6.847 -6.325  0.050 -6.415 -6.164  2.760 -6.412  1.923 -1.086 -5.583 -1.238 -1.268 
    ML   193   191 6   196     6     1     1    29    47  -9.186  -9.532  -0.117  -3.941  -9.382  -6.912  0.254 -2.403  1.230 -1.872 
    MR   194   191 6   196     6     1     1    29    46  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   195   191 6   196     6     0     0    27    44  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   196   196 5   196     6     1     1    30    47  -2.745  -7.223  -0.253  -8.878  -9.655  -9.315  0.000  0.000  0.000  0.000 
    IR   197   197 6   197     5     1     1    30    47  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]     56     77 g c = =
    MP   198   197 6   202     6     2     2    28    46 -11.952 -11.892  -0.038 -10.668  -5.341 -11.343 -6.032 -4.676 -5.853  1.897 -6.949 -6.454  0.239 -6.528 -6.282  2.977 -6.533 -0.036  1.004 -5.712 -4.035 -4.814 
    ML   199   197 6   202     6     1     1    27    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   200   197 6   202     6     1     1    27    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   201   197 6   202     6     0     0    25    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   202   202 5   202     6     1     1    29    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   203   203 6   203     5     1     1    28    45  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]     57     76 G C = =
    MP   204   203 6   208     6     2     2    26    44  -2.546 -11.856  -0.274 -10.633 -10.913 -11.308 -6.021 -4.666 -1.836 -0.438 -6.934 -6.446  1.004 -6.514 -6.268  3.426 -6.521 -0.383 -2.285 -5.705  0.122 -4.803 
    ML   205   203 6   208     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   206   203 6   208     6     1     1    24    42  -8.575  -7.304  -0.368  -7.282  -2.416  -5.496 -1.302 -2.476  1.650 -1.861 
     D   207   203 6   208     6     0     0    22    39  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   208   208 5   208     6     1     1    25    43  -6.253  -0.775  -1.808  -3.158  -8.947  -8.608  0.000  0.000  0.000  0.000 
    IR   209   209 6   209     5     1     1    25    42  -4.853  -0.079  -8.364  -6.532  -7.638          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]     59     74 g u = =
    MP   210   209 6   214     6     2     2    24    41 -11.924 -11.863  -0.003 -10.640 -10.919 -11.314 -6.996 -6.053 -6.806 -2.301 -6.317 -7.410  0.707 -6.762 -6.968  1.996 -0.819  2.985  0.312 -6.888 -1.485 -5.636 
    ML   211   209 6   214     6     1     1    23    40  -7.775  -8.121  -0.335  -2.529  -7.971  -5.500 -1.027 -2.151  1.555 -1.535 
    MR   212   209 6   214     6     1     1    22    40  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   213   209 6   214     6     0     0    20    37  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   214   214 5   214     6     1     1    24    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   215   215 6   215     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]     60     73 c g = =
    MP   216   215 6   220     6     2     2    22    39 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -4.593 -4.591 -4.737  0.767 -4.483 -0.671  2.458 -4.910 -4.782  1.660 -5.327  0.814  0.687 -1.009 -0.285 -3.836 
    ML   217   215 6   220     6     1     1    21    38  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   218   215 6   220     6     1     1    20    38  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   219   215 6   220     6     0     0    19    35  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   220   220 5   220     6     1     1    22    39  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   221   221 6   221     5     1     1    21    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]     61     72 c g = =
    MP   222   221 6   226     6     2     2    20    37 -11.952 -11.892  -0.036  -5.407 -10.948 -11.343 -5.843 -5.507 -5.877  1.185 -5.134 -6.691  2.466 -5.685 -5.848  2.030 -1.026 -0.448  1.083 -6.005 -0.761 -4.652 
    ML   223   221 6   226     6     1     1    19    36  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   224   221 6   226     6     1     1    19    36  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   225   221 6   226     6     0     0    17    34  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   226   226 5   226     6     1     1    20    37  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   227   227 6   227     5     1     1    19    37  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]     62     71 G C = =
    MP   228   227 6   232     4     2     2    18    35 -11.016  -0.895  -1.119  -9.637                 -5.917 -0.575 -5.763  0.138 -1.535  0.028 -0.121 -6.371 -6.156  3.232 -6.433 -2.305  0.016 -5.642  0.266 -4.727 
    ML   229   227 6   232     4     1     1    17    34  -5.155  -5.337  -0.172  -4.067                  1.638 -2.044 -1.709 -1.556 
    MR   230   227 6   232     4     1     1    18    35  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   231   227 6   232     4     0     0    17    34  -4.568  -4.250  -2.265  -0.520                 
    IL   232   232 5   232     4     1     1    19    36  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   233   233 6   233     3     1     1    16    34  -2.105  -0.386  -8.850                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]     64      - u - + -
    ML   234   233 6   236     3     1     1    13    32 -11.969  -0.001 -10.623                         -2.331  0.086  0.408  0.499 
     D   235   233 6   236     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   236   236 3   236     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]     65      - c - + -
    ML   237   236 3   239     3     1     1    12    30 -11.969  -0.035  -5.390                         -0.171  0.859 -1.009 -0.320 
     D   238   236 3   239     3     0     0    14    33  -6.174  -1.687  -0.566                         
    IL   239   239 3   239     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]     66      - A - + -
    ML   240   239 3   242     3     1     1    10    29 -11.935  -0.001 -10.589                          1.518 -5.822  0.003 -3.097 
     D   241   239 3   242     3     0     0    12    30  -8.327  -0.243  -2.718                         
    IL   242   242 3   242     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]     67      - g - + -
    ML   243   242 3   245     2     1     1     1     1       *   0.000                                  0.133 -2.553  0.891 -0.187 
     D   244   242 3   245     2     0     0     0     0       *   0.000                                 
    IL   245   245 3   245     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    61 ]      -      - - - - -
     E   246   245 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   62 ]      -      - - - - -
     S   247   184 1   248     3     0     0    29    48 -11.969  -0.001 -10.623                         
    IL   248   248 2   248     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]     80      - G - + -
    ML   249   248 2   251     5     1     1    29    47 -10.914  -0.003 -10.730 -10.942 -11.834         -6.593 -8.359  1.993 -7.354 
     D   250   248 2   251     5     0     0    28    46  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   251   251 3   251     5     1     1    29    48  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   64 ]     81     97 g u = =
    MP   252   251 3   256     6     2     2    28    46 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -7.972 -6.523 -8.192 -0.967 -10.265 -10.229 -5.646 -8.236 -7.645  2.908 -8.267  2.981 -5.612 -9.169 -7.524 -6.796 
    ML   253   251 3   256     6     1     1    27    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   254   251 3   256     6     1     1    27    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   255   251 3   256     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   256   256 5   256     6     1     1    28    46  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   257   257 6   257     5     1     1    27    46  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   65 ]     82     96 U A = =
    MP   258   257 6   262     6     2     2    26    44 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.758 -6.494 -6.696  0.146 -5.499 -7.443  1.670 -6.188 -6.580 -2.118 -7.051 -0.631  3.149 -6.915  0.884 -5.310 
    ML   259   257 6   262     6     1     1    25    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   260   257 6   262     6     1     1    25    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   261   257 6   262     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   262   262 5   262     6     1     1    26    44  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   263   263 6   263     5     1     1    25    44  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   66 ]     83     95 G C = =
    MP   264   263 6   268     6     2     2    24    42 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -6.601 -2.343 -6.474  2.079 -7.643 -7.018  0.375 -7.090 -6.710  3.304 -7.001 -2.788 -2.974 -6.341 -4.725 -5.406 
    ML   265   263 6   268     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   266   263 6   268     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   267   263 6   268     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   268   268 5   268     6     1     1    24    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   269   269 6   269     5     1     1    24    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   67 ]     84     94 G C = =
    MP   270   269 6   274     6     2     2    22    40 -11.952 -11.892  -0.003 -10.668 -10.948 -11.343 -9.418 -6.513 -10.563  0.693 -11.229 -7.845 -5.765 -10.433 -7.847  3.834 -8.098 -4.350 -6.065 -8.239 -8.107 -9.298 
    ML   271   269 6   274     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   272   269 6   274     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   273   269 6   274     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   274   274 5   274     6     1     1    23    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   275   275 6   275     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   68 ]     85     93 G C = =
    MP   276   275 6   280     4     2     2    20    38 -11.053 -11.260  -0.003  -9.674                 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883  3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 
    ML   277   275 6   280     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   278   275 6   280     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   279   275 6   280     4     0     0    22    40  -4.568  -4.250  -2.265  -0.520                 
    IL   280   280 5   280     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   281   281 6   281     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   69 ]     86      - U - + -
    ML   282   281 6   284     3     1     1    17    36 -11.969  -0.001 -10.623                         -8.197 -7.345 -9.248  1.996 
     D   283   281 6   284     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   284   284 3   284     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   70 ]     87      - U - + -
    ML   285   284 3   287     3     1     1    16    34 -11.969  -0.001 -10.623                         -8.197 -7.345 -9.248  1.996 
     D   286   284 3   287     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   287   287 3   287     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   71 ]     88      - C - + -
    ML   288   287 3   290     3     1     1    15    33 -11.969  -0.001 -10.623                         -7.477  1.993 -7.951 -6.500 
     D   289   287 3   290     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   290   290 3   290     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   72 ]     89      - G - + -
    ML   291   290 3   293     3     1     1    13    32 -11.969  -0.001 -10.623                         -3.727 -8.215  1.969 -7.257 
     D   292   290 3   293     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   293   293 3   293     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   73 ]     90      - A - + -
    ML   294   293 3   296     3     1     1    12    30 -11.969  -0.001 -10.623                          1.994 -8.093 -7.361 -7.495 
     D   295   293 3   296     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   296   296 3   296     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   74 ]     91      - U - + -
    ML   297   296 3   299     3     1     1    10    29 -11.969  -0.001 -10.623                         -6.046  0.945 -7.094  1.037 
     D   298   296 3   299     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   299   299 3   299     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   75 ]     92      - U - + -
    ML   300   299 3   302     2     1     1     1     1       *   0.000                                 -8.197 -7.345 -9.248  1.996 
     D   301   299 3   302     2     0     0     0     0       *   0.000                                 
    IL   302   302 3   302     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    76 ]      -      - - - - -
     E   303   302 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-SeC
ACC   bact-SeC-043016
LENG  95
MAXL  182
ALPH  RNA
RF    yes
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Sat Apr 30 15:16:09 2016
COM   [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/bact-SeC-043016.sto
NSEQ  59
EFFN  3.482239
CKSUM 3815334794
STATS LOCAL MSV       -8.9124  0.71863
STATS LOCAL VITERBI  -10.1148  0.71863
STATS LOCAL FORWARD   -3.4198  0.71863
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66423  1.29067  1.20700  1.44188
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  0.00000        *
      1   2.51682  3.53042  0.15355  3.43168      1 G = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      2   2.90103  3.71406  0.11121  3.65328      2 G = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      3   0.92502  2.28596  0.90692  2.32242      3 g = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      4   0.57810  2.92068  1.13907  2.73297      4 A = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      5   2.36950  3.40108  0.17988  3.27636      5 G = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      6   1.57542  1.32246  1.41823  1.25717      6 u = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      7   1.68280  1.75148  0.77852  1.70624      7 g = - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
      8   1.49307  1.34800  1.42807  1.28812      8 u = - (
          1.38629  1.38629  1.38629  1.38629
          0.04026  4.20436  3.70767  1.46634  0.26236  1.09861  0.40547
      9   0.95473  1.92845  1.50714  1.39364      9 a + - ,
          1.38629  1.38629  1.38629  1.38629
          0.03061  4.19471  4.19471  1.46634  0.26236  0.79620  0.59973
     10   1.87718  1.98594  2.40699  0.47861     10 U + - ,
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     11   1.84206  1.00340  1.39538  1.48219     11 c = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     12   1.76621  1.94816  0.57985  2.06750     12 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     13   1.87625  1.48672  1.17653  1.16355     13 u = - <
          1.38629  1.38629  1.38629  1.38629
          0.22821  1.66540  4.20436  0.15104  1.96476  1.09861  0.40547
     14   1.66551  1.25808  1.29139  1.37905     15 c = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     15   1.70470  1.26567  1.51498  1.15103     16 u = - <
          1.38629  1.38629  1.38629  1.38629
          0.04875  3.42178  4.20436  0.75100  0.63846  1.09861  0.40547
     16   3.68568  0.14598  3.52516  2.50960     18 C = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     17   2.18177  0.95684  2.75488  0.82226     19 u + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     18   3.17650  4.11094  0.08708  3.67791     20 G + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     19   3.17650  4.11094  0.08708  3.67791     21 G + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     20   3.06951  2.95784  3.60158  0.13428     22 U + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     21   2.78726  3.68937  0.12563  3.45832     23 G = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     22   1.45508  1.78144  0.98021  1.50062     24 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     23   1.73046  1.41834  1.05045  1.46576     25 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     24   1.65215  1.34323  1.07259  1.58357     26 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     25   2.36295  0.68186  1.76945  1.47073     27 C = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     26   1.75473  1.56667  0.87836  1.59533     28 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     27   1.71003  1.05029  1.40488  1.49652     29 c + - ,
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     28   2.04842  0.82246  1.65476  1.42472     30 c = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     29   1.96949  0.99178  1.90621  1.07613     31 c = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     30   2.35197  3.42118  0.17961  3.30919     32 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     31   2.89407  3.70428  0.11230  3.64003     33 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     32   1.30850  1.66748  1.39407  1.22762     34 u = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     33   2.70621  0.30695  3.31168  1.82595     35 C + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     34   3.06951  2.95784  3.60158  0.13428     36 U + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     35   3.06951  2.95784  3.60158  0.13428     37 U * - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     36   3.42192  0.11483  3.98323  2.86101     38 C * - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     37   0.09283  3.71958  3.39964  3.47309     39 A * - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     38   0.09283  3.71958  3.39964  3.47309     40 A + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     39   0.16270  3.01192  3.02633  2.94770     41 A + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     40   1.37391  1.52864  1.50999  1.17395     42 u = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     41   3.82274  0.13396  3.55772  2.59023     43 C = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     42   3.52613  0.20800  3.26227  2.11966     44 C = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     43   1.21600  2.07138  0.88765  1.79603     45 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.12027  2.49733  3.47325  0.33016  1.26871  1.09861  0.40547
     44   1.69045  1.88720  0.72574  1.71423     48 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.04648  4.18814  3.49844  1.46634  0.26236  0.67435  0.71231
     45   1.77817  2.07718  2.08493  0.54222     49 U + - ,
          1.38629  1.38629  1.38629  1.38629
          0.14103  2.15087  4.18942  0.37116  1.17097  0.69487  0.69143
     46   1.63969  1.54741  1.37539  1.07757     52 u = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     47   1.56670  2.01377  0.69234  1.84909     53 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.23654  1.63111  4.20436  0.28010  1.40939  1.09861  0.40547
     48   1.54517  1.95960  0.74057  1.77805     56 g = - <
          1.38629  1.38629  1.38629  1.38629
          0.04928  4.20436  3.40642  1.46634  0.26236  1.09861  0.40547
     49   1.78762  1.85575  0.65690  1.84612     57 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.17272  1.94197  4.18596  0.20005  1.70755  0.64212  0.74691
     50   1.81870  1.75570  0.74130  1.66874     59 g = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     51   1.64840  1.31395  1.27764  1.34634     60 g = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     52   1.70380  1.28461  1.23799  1.38118     61 g = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     53   1.63474  1.63332  0.96248  1.47941     62 g = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     54   1.64062  1.48466  1.40277  1.09767     64 u + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     55   1.35098  1.14123  1.88639  1.30945     65 c + - _
          1.38629  1.38629  1.38629  1.38629
          0.04704  4.20436  3.47325  1.46634  0.26236  1.09861  0.40547
     56   0.55666  2.53840  1.49816  2.08468     66 A + - _
          1.38629  1.38629  1.38629  1.38629
          0.03082  4.18814  4.18814  1.46634  0.26236  0.67435  0.71231
     57   1.24382  2.08804  1.08804  1.38265     67 g + - _
          1.38629  1.38629  1.38629  1.38629
          0.52506  0.97756  3.43415  0.31284  1.31442  1.09861  0.40547
     58   1.73525  0.98926  1.46861  1.50712     71 c = - >
          1.38629  1.38629  1.38629  1.38629
          0.03086  4.18688  4.18688  1.46634  0.26236  0.65536  0.73242
     59   1.60608  1.41680  1.10627  1.48700     72 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     60   1.61032  1.43076  1.16565  1.38899     73 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.04572  4.20436  3.51465  1.46634  0.26236  1.09861  0.40547
     61   1.89254  1.16760  1.53055  1.13388     74 u = - >
          1.38629  1.38629  1.38629  1.38629
          0.11635  2.35721  4.18942  0.29417  1.36707  0.69487  0.69143
     62   2.19512  0.76022  1.58471  1.53209     76 c = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     63   1.97464  0.85370  1.80166  1.30812     77 c = - >
          1.38629  1.38629  1.38629  1.38629
          0.08602  4.20436  2.69572  1.46634  0.26236  1.09861  0.40547
     64   2.16829  0.87475  1.80286  1.19127     78 c = - >
          1.38629  1.38629  1.38629  1.38629
          0.06458  4.15036  3.06234  1.46634  0.26236  0.36632  1.18181
     65   1.42448  1.63972  1.17366  1.36220     79 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03125  4.17453  4.17453  1.46634  0.26236  0.51508  0.90995
     66   3.17650  4.11094  0.08708  3.67791     80 G + - ,
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     67   2.03018  2.99379  0.27538  2.82504     81 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     68   1.99048  1.26580  1.80734  0.87403     82 u = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     69   1.48793  2.17100  0.58710  2.26183     83 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     70   2.11766  3.27815  0.22374  3.15898     84 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     71   2.90135  3.71452  0.11116  3.65390     85 G = - <
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     72   3.06951  2.95784  3.60158  0.13428     86 U + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     73   3.06951  2.95784  3.60158  0.13428     87 U + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     74   3.42192  0.11483  3.98323  2.86101     88 C + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     75   2.85284  3.90073  0.11477  3.48935     89 G + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     76   0.09283  3.71958  3.39964  3.47309     90 A + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     77   2.18129  0.97152  2.75317  0.80997     91 u + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     78   3.06951  2.95784  3.60158  0.13428     92 U + - _
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     79   3.82979  0.13356  3.56114  2.59153     93 C = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     80   3.37756  0.25879  3.10249  1.90418     94 C = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     81   2.51559  0.65753  2.01780  1.31636     95 C = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     82   1.08185  2.04831  1.03490  1.73264     96 g = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     83   3.05973  0.70115  2.79881  0.92582     97 c = - >
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     84   1.40595  1.72009  1.16414  1.33322     98 g = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     85   1.93742  0.86247  1.58010  1.47906     99 c = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     86   1.42094  1.54285  1.18867  1.42663    100 g = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     87   3.48427  0.22009  3.22910  2.06136    101 C = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     88   2.95298  1.47856  2.71989  0.42470    102 U = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     89   2.56447  1.01517  2.12333  0.81856    103 u = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     90   3.84446  0.13274  3.56822  2.59423    104 C = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     91   3.65102  0.17920  3.37685  2.26391    105 C = - )
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     92   3.17650  4.11094  0.08708  3.67791    106 G + - :
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     93   3.42192  0.11483  3.98323  2.86101    107 C * - :
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     94   3.42192  0.11483  3.98323  2.86101    108 C * - :
          1.38629  1.38629  1.38629  1.38629
          0.03032  4.20436  4.20436  1.46634  0.26236  1.09861  0.40547
     95   0.14108  3.18972  3.11453  3.07921    109 A * - :
          1.38629  1.38629  1.38629  1.38629
          0.01527  4.18931        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Ser
ACC      bact-Ser-r2-022416
STATES   289
NODES    77
CLEN     90
W        1352
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 19:39:59 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ser-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ser-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ser-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     17183
EFFN     17183.000000
CKSUM    1476923651
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -8.9204 0.71888
ECMLC    0.64295    -8.82167     1.08923     1600000      702427  0.001708
ECMGC    0.37270   -28.22054   -16.47593     1600000       31848  0.012560
ECMLI    0.61650    -9.05166     1.21668     1600000      673662  0.001781
ECMGI    0.37906   -24.02471   -12.83722     1600000       27782  0.014398
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     0     1  1352  2832 -18.995 -20.240  -0.959  -1.042                 
    IL     1     1 2     1     4    14    40  1356  2836  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    15    40  1357  2837  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    445 - A - -
    MR     3     2 3     5     3    17    40  1356  2835 -19.444  -0.000 -17.762                          2.000 -15.069 -14.346 -14.399 
     D     4     2 3     5     3    12    36  1353  2832 -20.455 -15.633  -0.000                         
    IR     5     5 3     5     3    15    40  1356  2836  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    444 - C - -
    MR     6     5 3     8     3    16    39  1355  2834 -19.444  -0.000 -17.762                         -16.237  2.000 -17.527 -14.277 
     D     7     5 3     8     3    12    36  1353  2832 -20.455 -15.633  -0.000                         
    IR     8     8 3     8     3    15    39  1355  2835  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    443 - C - -
    MR     9     8 3    11     3    15    38  1354  2833 -19.444  -0.000 -17.762                         -16.237  2.000 -17.527 -14.277 
     D    10     8 3    11     3    12    36  1353  2832 -20.455  -0.002  -9.591                         
    IR    11    11 3    11     3    10    32  1353  2833  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    442 - G - -
    MR    12    11 3    14     5    14    37  1353  2832  -7.258  -0.177 -18.857  -3.199 -19.961         -1.821 -6.331  1.767 -1.730 
     D    13    11 3    14     5     8    26  1343  2823  -9.063  -4.418  -1.229  -8.120  -0.940         
    IR    14    14 3    14     5    13    36  1352  2832  -8.606  -0.265 -12.117  -2.603 -11.391          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    440 G C - -
    MP    15    14 3    19     6    13    37  1352  2832 -19.802 -19.741  -0.002 -18.518 -18.797  -9.889 -17.477 -14.365 -18.972 -2.554 -19.134 -15.609 -3.622 -18.737 -11.763  3.953 -3.191 -3.038 -5.754 -16.039 -5.959 -17.791 
    ML    16    14 3    19     6    11    32  1347  2827  -9.219  -9.565  -4.280  -0.096  -9.415  -6.945 -2.986 -2.742 -3.766  1.868 
    MR    17    14 3    19     6    14    33  1347  2827 -18.196 -16.925  -2.278 -16.903  -0.333 -15.116 -12.633  1.908 -13.159 -2.026 
     D    18    14 3    19     6     8    25  1338  2818 -12.582 -11.281  -7.078  -7.760  -7.777  -0.025 
    IL    19    19 5    19     6    10    31  1351  2830  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    10    32  1350  2830  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    439 G C - -
    MP    21    20 6    25     6    14    36  1350  2830 -19.837 -19.776  -0.018  -8.351  -6.926 -10.291 -17.780 -1.613 -20.160 -5.300 -19.404 -15.551 -3.759 -19.593 -7.529  3.951 -8.888 -4.696 -4.036 -7.560 -16.147 -19.283 
    ML    22    20 6    25     6    11    32  1346  2826  -9.219  -9.565  -4.280  -0.096  -9.415  -6.945  1.911 -3.937 -3.434 -3.631 
    MR    23    20 6    25     6    14    31  1345  2825 -17.863 -16.592  -3.856 -16.570  -0.103 -14.783 -11.009  1.992 -5.626 -10.452 
     D    24    20 6    25     6     8    25  1338  2818 -14.411 -13.109  -8.906  -9.588  -9.605  -0.007 
    IL    25    25 5    25     6    10    31  1349  2829  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    10    32  1349  2828  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    438 A U - -
    MP    27    26 6    31     6    15    35  1348  2828  -8.056 -19.768  -0.062 -18.544  -4.695 -19.219 -13.093 -12.804 -13.118  3.815 -17.777 -18.976 -3.668 -2.272 -13.637 -1.226 -16.271 -2.237 -0.149 -13.293 -3.383 -11.306 
    ML    28    26 6    31     6    12    32  1345  2825 -12.515 -12.861  -2.278  -0.335 -12.711 -10.240  1.994 -7.939 -7.215 -7.353 
    MR    29    26 6    31     6    13    30  1344  2824 -17.887 -16.616 -12.525 -16.594  -0.000 -14.808 -9.083 -4.989 -3.727  1.960 
     D    30    26 6    31     6     8    25  1338  2818 -15.049 -13.747  -9.544 -10.226 -10.244  -0.004 
    IL    31    31 5    31     6    13    34  1347  2827  -8.562  -8.825  -0.009 -10.480 -11.257 -10.917  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    10    31  1347  2827  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      5    437 G C - -
    MP    33    32 6    37     6    16    33  1346  2826 -19.773 -19.712  -0.003  -9.109 -18.768 -19.164 -13.993 -6.283 -13.827  0.436 -14.951 -14.319 -2.253 -14.511 -14.180  3.805 -10.584 -6.449 -1.387 -4.548 -6.970 -12.792 
    ML    34    32 6    37     6    12    30  1344  2823 -12.191 -12.537  -3.086  -0.183 -12.387  -9.916 -1.772  1.468 -1.338 -0.875 
    MR    35    32 6    37     6    12    29  1343  2823 -18.366 -17.095  -1.847 -17.074  -0.470 -15.287 -11.160  1.981 -5.201 -5.368 
     D    36    32 6    37     6     8    25  1338  2818 -15.049 -13.747  -9.544 -10.226 -10.244  -0.004 
    IL    37    37 5    37     6    10    30  1345  2825  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    10    31  1345  2825  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      6    436 A U - -
    MP    39    38 6    43     6    14    31  1344  2824 -19.827  -8.107  -0.007  -9.601 -18.822 -19.217 -13.802 -2.312 -13.621  3.442 -6.952 -14.219 -1.593 -8.663 -14.057  1.855 -5.202 -0.459 -2.320 -13.477 -5.899 -12.586 
    ML    40    38 6    43     6    12    29  1342  2822 -12.799 -13.145  -4.545  -0.065 -12.995 -10.525  1.427 -4.732 -2.455  0.126 
    MR    41    38 6    43     6    10    28  1341  2821 -17.897 -16.626  -2.433 -16.604  -0.295 -14.817 -9.517 -0.417 -2.272  1.605 
     D    42    38 6    43     6     8    25  1338  2818 -15.049 -13.747  -5.483 -10.226 -10.244  -0.035 
    IL    43    43 5    43     6    10    30  1343  2823  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    12    30  1343  2823  -7.634  -0.011 -11.145  -9.313 -10.419          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      7    434 G C - -
    MP    45    44 6    49     6    12    29  1342  2822  -7.788 -19.790  -0.061 -18.567  -4.758 -19.242 -13.815 -4.910 -13.633  1.605 -12.188 -14.229 -0.101 -4.825 -8.082  3.407 -5.786 -1.740 -0.391 -11.380 -2.292 -4.071 
    ML    46    44 6    49     6    11    28  1341  2821 -13.143 -13.489  -0.007  -7.898 -13.339 -10.868 -7.024 -8.795  1.995 -7.786 
    MR    47    44 6    49     6     9    27  1340  2820 -17.602 -16.331  -2.012 -16.309  -0.411 -14.522 -10.497  1.644 -0.425 -2.947 
     D    48    44 6    49     6     8    25  1338  2818 -15.018 -13.717  -9.514 -10.196 -10.213  -0.005 
    IL    49    49 5    49     6    11    28  1341  2821  -8.849  -9.112  -0.008 -10.767 -11.543 -11.203  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    10    28  1341  2821  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      9    433 g c - -
    MP    51    50 6    55     4    10    27  1340  2820  -7.848 -19.271  -0.064  -4.674                 -13.815 -12.455 -13.634  2.058 -14.754 -14.233 -1.401 -14.318 -5.176  2.976 -13.323 -0.836  1.538 -13.491 -3.354 -12.598 
    ML    52    50 6    55     4     9    26  1339  2819  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4     8    25  1338  2818 -15.914 -14.943  -3.583  -0.126                 -8.114  0.141 -11.188  1.533 
     D    54    50 6    55     4     8    25  1338  2818 -10.442 -10.123  -0.816  -1.217                 
    IL    55    55 5    55     4    10    26  1339  2819  -8.099  -8.783  -0.009 -11.268                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3     9    27  1340  2820  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     11      - U - - -
    ML    57    56 6    59     3     9    25  1338  2818  -6.818  -0.013 -18.583                         -3.578 -5.856 -5.007  1.952 
     D    58    56 6    59     3     7    24  1337  2817  -3.422  -0.810  -1.573                         
    IL    59    59 3    59     3     9    26  1339  2819  -1.063  -0.940 -12.715                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     15      - G - - -
    ML    60    59 3    62     2     8    24  1337  2817 -20.708  -0.000                                 -0.039 -2.589  1.458 -3.135 
     D    61    59 3    62     2     7    23  1336  2816 -15.104  -0.000                                 
    IL    62    62 3    62     2     8    25  1338  2818  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3    64   176     7    23  1336  2816                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S    64    63 1    65     1     0     2  1301  2780   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B    65    64 1    66   119     0     2  1301  2780                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S    66    65 1    67     4     0     1  1056  2344  -0.477  -2.503  -5.760  -3.529                 
                                             [ MATP   18 ]     16    183 g c - -
    MP    67    66 1    71     6     2     5  1009  2296  -6.678 -19.433  -0.019  -8.277 -18.490 -18.885 -6.447 -3.665 -8.552 -1.276 -10.889 -4.546  2.759 -13.435 -5.287  2.773 -14.109 -3.280  0.602 -13.725 -3.415 -3.196 
    ML    68    66 1    71     6     1     2  1114  2401 -18.343 -18.689  -3.966  -0.709  -8.797  -1.635 -2.441  1.569 -1.913 -0.777 
    MR    69    66 1    71     6     1     3  1110  2398 -15.624 -14.353 -10.261 -14.331  -0.002 -12.544  1.964 -10.050 -3.384 -9.541 
     D    70    66 1    71     6     0     1  1114  2402 -20.465 -19.163 -14.960  -1.272 -15.660  -0.771 
    IL    71    71 5    71     6     1     4  1008  2295  -9.594  -0.864  -1.157 -11.512 -12.288 -11.948  0.000  0.000  0.000  0.000 
    IR    72    72 6    72     5     1     3  1007  2295  -7.868  -0.010 -11.380  -9.547 -10.653          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     18    181 C G - -
    MP    73    72 6    77     6     2     3  1006  2293  -9.415  -8.334  -0.009 -18.228 -18.507  -9.423 -2.012 -15.222 -15.112 -2.493 -13.736 -15.611  3.690 -14.516 -15.071  0.256 -15.414 -10.352  0.431 -15.443 -2.953 -13.827 
    ML    74    72 6    77     6     1     2  1119  2406  -4.803 -18.417 -13.132  -0.085 -18.267  -5.558  0.067  0.953 -1.141 -0.829 
    MR    75    72 6    77     6     1     2  1109  2397 -15.654 -14.383 -10.292 -14.361  -0.004  -9.209  1.787 -9.288 -0.874 -9.174 
     D    76    72 6    77     6     0     1  1111  2398 -20.777 -19.475 -15.272  -0.638 -15.972  -1.485 
    IL    77    77 5    77     6     1     3  1006  2293  -9.439  -0.278  -2.533 -11.357 -12.133 -11.794  0.000  0.000  0.000  0.000 
    IR    78    78 6    78     5     1     3  1005  2292  -8.802  -0.005 -12.313 -10.481 -11.587          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     20    179 C G - -
    MP    79    78 6    83     6     2     4  1004  2291  -3.985  -9.834  -0.259  -3.317 -18.516 -18.911 -13.817 -7.990 -3.009  0.827 -5.964 -14.661  3.412 -13.335 -2.020  0.158 -14.188 -10.324 -0.035 -13.999  0.109 -5.451 
    ML    80    78 6    83     6     1     2  1120  2408  -3.107 -18.919 -13.634  -0.636 -18.769  -2.056  0.141  1.042 -3.131 -0.467 
    MR    81    78 6    83     6     1     3  1109  2396 -15.652 -14.381  -2.876 -14.359  -0.212 -12.573  1.787 -9.285 -0.872 -9.172 
     D    82    78 6    83     6     0     1  1090  2377 -19.442 -18.140 -13.937  -4.498 -14.636  -0.065 
    IL    83    83 5    83     6     1     3  1097  2384 -12.907  -0.632  -6.303  -1.549 -15.601 -15.261  0.000  0.000  0.000  0.000 
    IR    84    84 6    84     5     1     3  1067  2354  -1.036  -1.643  -2.380 -14.054 -15.160          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     22    176 G A - -
    MP    85    84 6    89     4     2     4   858  2145  -5.834 -18.772  -0.026 -17.186                  1.798 -6.507 -1.834 -3.967 -16.031 -4.191 -2.542 -15.465  3.363 -1.711 -5.145 -1.015 -2.646 -16.716 -1.309 -1.950 
    ML    86    84 6    89     4     1     2  1131  2419  -0.319  -3.379  -3.376  -7.457                 -0.674 -0.878  1.491 -5.724 
    MR    87    84 6    89     4     1     2  1118  2405 -13.468  -0.418 -10.364  -1.996                 -8.714 -10.484  1.998 -9.472 
     D    88    84 6    89     4     0     1  1087  2374  -1.366  -3.390  -3.391  -1.247                 
    IL    89    89 5    89     4     1     4  1138  2425  -1.758  -0.506 -13.987 -17.724                  0.000  0.000  0.000  0.000 
    IR    90    90 6    90     3     1     3  1137  2424  -0.021  -6.142 -14.411                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     28      - A - - -
    ML    91    90 6    93     3     1     2    68   143 -20.044  -0.002  -9.556                          1.959 -7.695 -3.707 -5.070 
     D    92    90 6    93     3     0     1    66   141 -17.040  -1.710  -0.526                         
    IL    93    93 3    93     3     1     2    69   144  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     29      - G - - -
    ML    94    93 3    96     3     1     2    67   142 -20.063  -0.002  -9.625                         -2.192 -4.254  1.828 -2.482 
     D    95    93 3    96     3     0     0    65   140 -16.572  -3.078  -0.182                         
    IL    96    96 3    96     3     1     2    68   143  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     30      - U - - -
    ML    97    96 3    99     3     1     2    67   141  -2.248  -0.346  -8.580                         -1.024 -0.471 -2.955  1.410 
     D    98    96 3    99     3     0     0    65   140 -16.452  -0.005  -8.178                         
    IL    99    99 3    99     3     1     1    67   141  -1.189  -0.883  -5.705                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     35      - G - - -
    ML   100    99 3   102     3     1     1    65   140 -20.096  -0.016  -6.515                         -8.261 -6.598  1.983 -4.897 
     D   101    99 3   102     3     0     0    61   136 -14.828  -7.693  -0.007                         
    IL   102   102 3   102     3     1     1    66   140  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     36      - G - - -
    ML   103   102 3   105     3     1     2    64   139 -20.080  -0.003  -8.707                         -4.713 -8.181  1.984 -8.213 
     D   104   102 3   105     3     0     0    61   136 -15.914  -5.659  -0.029                         
    IL   105   105 3   105     3     1     1    65   139  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     37      - U - - -
    ML   106   105 3   108     3     1     1    63   138 -20.077  -0.218  -2.837                         -3.495  0.631 -2.517  1.130 
     D   107   105 3   108     3     0     0    61   135 -16.045  -0.596  -1.564                         
    IL   108   108 3   108     3     1     1    64   138  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     38      - U - - -
    ML   109   108 3   111     3     1     2    63   137  -2.093  -0.385 -18.539                         -2.000  0.208 -2.430  1.269 
     D   110   108 3   111     3     0     0    15    89 -18.737  -0.444  -1.916                         
    IL   111   111 3   111     3     1     2    68   142  -0.357  -2.191 -17.376                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     54      - G - - -
    ML   112   111 3   114     3     1     1     5    23 -20.054  -0.279  -2.508                         -0.850 -2.186  1.136  0.039 
     D   113   111 3   114     3     0     0     6    24 -16.822  -0.001 -11.214                         
    IL   114   114 3   114     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     55      - A - - -
    ML   115   114 3   117     2     1     1     1     1       *   0.000                                  1.956 -6.248 -3.470 -5.902 
     D   116   114 3   117     2     0     0     0     0       *   0.000                                 
    IL   117   117 3   117     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   118   117 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   119    65 1   120     3     0     0  1200  2677 -20.110  -0.362  -2.171                         
    IL   120   120 2   120     3     1     1  1192  2669  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]    184      - G - - -
    ML   121   120 2   123     5     1     1  1183  2660  -5.135  -0.043  -9.862 -18.708 -19.600          0.632 -3.298  1.220 -5.712 
     D   122   120 2   123     5     0     0  1239  2716  -1.478  -3.938  -2.707  -2.506  -2.021         
    IL   123   123 3   123     5     1     1  1258  2735  -0.106  -4.531 -18.056  -5.195 -19.162          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    209    350 c g - -
    MP   124   123 3   128     6     2     2  1179  2656 -19.705  -5.770  -0.050 -11.084  -6.006 -19.096 -14.000 -5.364 -14.000  1.978 -4.347 -14.844  2.935 -5.691 -2.841  0.381 -14.372  0.649 -0.173 -14.182 -1.250 -7.455 
    ML   125   123 3   128     6     1     1  1173  2650 -16.005 -16.351  -0.036 -10.760 -16.201  -5.383  1.965 -11.015 -3.413 -10.474 
    MR   126   123 3   128     6     1     1  1293  2770 -17.712 -16.441 -12.349 -16.419  -0.000 -14.632 -13.159 -12.300  0.994  1.006 
     D   127   123 3   128     6     0     0  1171  2648 -19.803 -18.501 -14.298 -14.981 -14.998  -0.000 
    IL   128   128 5   128     6     1     1  1182  2659  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   129   129 6   129     5     1     1  1174  2651  -9.819  -0.002 -13.330 -11.498 -12.604          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    210    348 C G - -
    MP   130   129 6   134     6     2     2  1172  2649 -19.741 -19.680  -0.223 -18.456  -2.802 -19.131 -14.038 -9.032 -6.793  1.312 -3.722 -14.882  3.418 -13.556 -13.896 -1.978 -14.409 -0.726  0.790 -14.221 -2.699 -9.278 
    ML   131   129 6   134     6     1     1  1167  2644  -9.633  -9.979  -4.693  -4.388  -9.829  -0.136  1.942 -4.532 -3.998 -4.250 
    MR   132   129 6   134     6     1     1  1292  2769 -17.932 -16.661 -12.569 -16.639  -0.220  -2.822 -11.359 -12.879  1.781 -0.827 
     D   133   129 6   134     6     0     0  1171  2648 -19.825 -18.523 -14.320 -15.002 -15.020  -0.000 
    IL   134   134 5   134     6     1     1  1125  2602  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   135   135 6   135     5     1     1  1142  2619  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    211    347 G C - -
    MP   136   135 6   140     6     2     2  1079  2556 -19.517  -5.395  -0.055  -6.200 -18.513 -18.908 -6.937 -6.552 -4.486  0.255 -11.693 -13.994  2.113 -10.834 -10.571  3.150 -14.014 -3.827  0.526 -10.065 -5.313 -12.284 
    ML   137   135 6   140     6     1     1  1089  2566  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 6   140     6     1     1  1301  2778 -19.065 -17.794 -13.703 -17.773  -0.000 -15.986 -12.944 -0.105  1.618 -13.025 
     D   139   135 6   140     6     0     0  1171  2648 -20.135 -18.833  -7.490  -6.367 -15.330  -0.026 
    IL   140   140 5   140     6     1     1  1139  2616  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1  1205  2683 -10.005  -0.444 -13.517  -1.923 -12.790          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    212    345 G C - -
    MP   142   141 6   146     6     2     2  1069  2546 -19.489 -19.428  -0.022 -10.676  -6.087 -18.880 -6.863 -10.009 -13.281 -3.753 -14.406 -9.259  1.085 -13.969 -13.718  3.517 -13.964  1.091 -3.378 -13.136 -3.061 -10.218 
    ML   143   141 6   146     6     1     1  1039  2516 -14.314 -14.660  -0.119  -3.662 -14.510 -12.039 -10.578 -9.362 -11.947  1.999 
    MR   144   141 6   146     6     1     1  1300  2777 -19.098 -17.827 -13.736 -17.805  -0.000 -16.019  1.779 -0.817 -14.248 -12.748 
     D   145   141 6   146     6     0     0  1172  2649 -20.109 -18.807 -14.605 -15.287  -2.284  -0.332 
    IL   146   146 5   146     6     1     1  1097  2574  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1  1122  2599  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]    213    344 u a - -
    MP   148   147 6   152     4     2     2  1044  2521  -5.571  -5.675  -0.084  -5.975                 -13.784 -3.973 -5.939  1.592 -5.727 -14.628  2.053 -10.034 -13.642 -1.245 -14.155 -11.051  2.974 -10.371 -1.151 -7.768 
    ML   149   147 6   152     4     1     1   885  2362  -8.367  -8.550  -0.018  -7.279                  0.314 -3.548 -4.081  1.385 
    MR   150   147 6   152     4     1     1  1299  2776 -17.286  -0.000 -14.183 -13.243                 -0.814  0.514  0.943 -3.629 
     D   151   147 6   152     4     0     0   519  1996 -15.200 -14.881 -12.897  -0.000                 
    IL   152   152 5   152     4     1     1  1299  2777  -1.001  -1.001 -10.447 -14.184                  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     3     1     1  1298  2775  -0.018  -7.085  -7.635                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    216      - C - - -
    ML   154   153 6   156     3     1     1    12    30 -19.841  -0.000 -18.495                         -17.096  1.306 -18.621  0.612 
     D   155   153 6   156     3     0     0    10    28 -18.975  -3.905  -0.100                         
    IL   156   156 3   156     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    217      - U - - -
    ML   157   156 3   159     3     1     1    10    29 -19.860  -0.000 -18.514                         -14.188 -5.288 -6.598  1.987 
     D   158   156 3   159     3     0     0     9    27 -18.875 -14.388  -0.000                         
    IL   159   159 3   159     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    218      - c - - -
    ML   160   159 3   162     3     1     1     9    28 -19.860  -0.000 -18.514                         -0.256  0.467 -0.107 -0.231 
     D   161   159 3   162     3     0     0     8    26 -18.875  -2.666  -0.247                         
    IL   162   162 3   162     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    219      - g - - -
    ML   163   162 3   165     3     1     1     8    26 -19.903  -0.035  -5.384                         -0.241 -0.228  0.412 -0.045 
     D   164   162 3   165     3     0     0     7    25 -18.628  -4.041  -0.090                         
    IL   165   165 3   165     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    220      - a - - -
    ML   166   165 3   168     3     1     1     6    25 -19.881  -0.000 -14.659                          0.404 -0.280 -0.003 -0.225 
     D   167   165 3   168     3     0     0     6    24 -18.758 -14.271  -0.000                         
    IL   168   168 3   168     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    221      - A - - -
    ML   169   168 3   171     3     1     1     5    23 -19.881  -0.013  -6.804                          1.845 -14.911 -1.310 -7.544 
     D   170   168 3   171     3     0     0     5    23 -18.758 -11.907  -0.000                         
    IL   171   171 3   171     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    222      - A - - -
    ML   172   171 3   174     2     1     1     1     1       *   0.000                                  1.771 -3.182 -2.055 -2.078 
     D   173   171 3   174     2     0     0     0     0       *   0.000                                 
    IL   174   174 3   174     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   175   174 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S   176    63 1   177     3     1     7   125   250 -20.110  -0.000 -18.764                         
    IL   177   177 2   177     3     1     8   126   251  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    351      - U - - -
    ML   178   177 2   180     2     1     7   125   250  -1.033  -0.968                                 -1.620 -0.019 -2.057  1.291 
     D   179   177 2   180     2     0     6   123   248  -8.445  -0.004                                 
    IL   180   180 3   180     2     1     7   124   249  -4.073  -0.088                                  0.000  0.000  0.000  0.000 
                                             [ BIF    49 ]      -      - - - - -
     B   181   180 3   182   232     0     6   123   248                                                 
                                             [ BEGL   50 ]      -      - - - - -
     S   182   181 1   183     4     0     0   105   230  -0.076  -5.960  -6.948  -5.207                 
                                             [ MATP   51 ]    356    400 g c - -
    MP   183   182 1   187     6     2     3   105   230 -19.895 -19.834  -0.004 -18.611  -8.537 -19.285 -7.532 -3.251 -1.117  2.043 -14.807 -9.825 -1.493 -14.367 -11.527  2.641  1.657  0.313 -2.241 -5.769 -4.949 -4.196 
    ML   184   182 1   187     6     1     1   102   227 -14.889 -15.235  -0.985  -1.016 -15.085 -12.615 -9.455  1.994 -9.888 -6.128 
    MR   185   182 1   187     6     1     1   104   229 -14.441 -13.170  -0.006 -13.148  -8.282 -11.361 -0.820 -2.174 -4.017  1.656 
     D   186   182 1   187     6     0     0    90   215 -18.788 -17.486 -13.283  -1.528 -13.983  -0.615 
    IL   187   187 5   187     6     1     1   104   229  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   188   188 6   188     5     1     1   104   229  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    357    399 g c - -
    MP   189   188 6   193     6     2     4   103   228 -19.916 -19.855  -0.000 -18.631 -18.911 -19.306 -13.858 -3.797 -10.727  0.937 -10.685 -9.787  0.243 -9.629 -0.577  2.767 -9.743 -1.699  2.266 -11.520 -2.254 -5.681 
    ML   190   188 6   193     6     1     1    97   222 -14.999 -15.345 -10.060  -0.002 -15.195 -12.725 -10.144  1.446 -11.228  0.350 
    MR   191   188 6   193     6     1     1   102   227 -12.794 -11.523  -0.018 -11.501  -6.635  -9.714  1.993 -7.687 -6.977 -7.122 
     D   192   188 6   193     6     0     0    49   174 -18.173 -16.872 -12.669 -13.351 -13.368  -0.001 
    IL   193   193 5   193     6     1     1   102   227  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   194   194 6   194     5     1     1   102   227  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    358    398 g c - -
    MP   195   194 6   199     6     2     2   101   226 -19.919 -19.859  -0.014 -11.776 -14.327  -6.775 -13.886 -6.905 -13.705  2.385 -9.790 -7.355  0.878 -14.383 -14.139  2.476 -4.860  0.513 -1.834 -13.561  0.694 -12.668 
    ML   196   194 6   199     6     1     1    96   221 -14.999 -15.345  -0.885  -1.126 -15.195 -12.725  1.098 -9.185  0.892 -9.090 
    MR   197   194 6   199     6     1     1    95   220  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   198   194 6   199     6     0     0    44   169 -18.173 -16.872 -12.669 -13.351 -13.368  -0.001 
    IL   199   199 5   199     6     1     1   100   225  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   200   200 6   200     5     1     1   100   225  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    359    397 C G - -
    MP   201   200 6   205     6     2     2    99   224  -8.030  -4.452  -0.195  -8.156  -8.391  -3.826 -8.642 -5.921 -9.739 -4.458 -13.144 -8.494  3.030 -13.766 -7.568  2.427 -9.645 -1.961 -0.748 -10.441  0.609 -12.785 
    ML   202   200 6   205     6     1     1    52   177 -13.925 -14.271  -8.986  -0.041 -14.121  -5.284  0.489 -4.824 -3.876  1.318 
    MR   203   200 6   205     6     1     1    88   213  -7.964  -6.693  -2.602  -6.672  -1.805  -0.928  1.368 -1.366 -1.094 -0.828 
     D   204   200 6   205     6     0     0    36   161 -18.756 -17.454 -13.251 -13.934 -13.951  -0.000 
    IL   205   205 5   205     6     1     1    77   202  -8.677  -8.940  -0.009 -10.595 -11.371 -11.032  0.000  0.000  0.000  0.000 
    IR   206   206 6   206     5     1     1   118   243  -0.213  -2.923  -8.652  -8.556 -16.998          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    361    387 g c - -
    MP   207   206 6   211     6     2     2    28    51  -5.946 -11.935  -0.500  -8.926  -7.083  -1.905 -9.666 -6.364 -13.480 -0.575 -1.318 -8.744  1.516 -13.929 -7.491  2.298 -2.897  2.072 -0.731 -0.033  0.269 -8.169 
    ML   208   206 6   211     6     1     1    26    48 -14.492 -14.838  -1.290  -1.312  -9.372  -2.421 -6.385  0.147 -0.645  1.164 
    MR   209   206 6   211     6     1     1    24    47 -13.330 -12.059  -2.848  -5.858  -3.775  -0.376 -0.156  0.573 -2.855  0.563 
     D   210   206 6   211     6     0     0    22    45 -20.595 -19.294 -15.091 -10.657 -15.790  -0.001 
    IL   211   211 5   211     6     1     1    30    54  -1.137  -1.855  -1.902 -13.420 -14.196  -9.672  0.000  0.000  0.000  0.000 
    IR   212   212 6   212     5     1     1    26    49  -8.814  -0.048 -12.325  -5.046 -11.599          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    365    385 g c - -
    MP   213   212 6   217     4     2     2    25    48  -2.102  -4.014  -0.533  -6.139                 -6.853 -8.990 -6.115  1.100 -5.537 -5.028  2.040 -11.201 -0.337  2.701 -13.937 -8.010 -0.330 -13.649  0.649 -7.601 
    ML   214   212 6   217     4     1     1    25    47  -1.884  -1.171  -1.817  -9.663                 -2.629  1.251 -1.622  0.181 
    MR   215   212 6   217     4     1     1    23    45  -7.189  -6.368  -0.085  -4.704                  1.922 -5.619 -4.129 -2.913 
     D   216   212 6   217     4     0     0    22    44 -10.864  -3.463  -0.200  -4.719                 
    IL   217   217 5   217     4     1     1    25    47  -2.448  -0.302  -7.460 -16.823                  0.000  0.000  0.000  0.000 
    IR   218   218 6   218     3     1     1    23    46  -2.009  -0.416  -9.090                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    372      - g - - -
    ML   219   218 6   221     3     1     1    22    44 -20.077  -0.000 -18.731                         -4.507 -0.746  0.919  0.555 
     D   220   218 6   221     3     0     0    17    40 -16.075  -4.870  -0.050                         
    IL   221   221 3   221     3     1     1    23    46  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    373      - u - - -
    ML   222   221 3   224     3     1     1    21    43 -20.078  -0.000 -11.638                          0.033  0.205 -3.476  0.794 
     D   223   221 3   224     3     0     0    17    39 -16.025  -4.511  -0.065                         
    IL   224   224 3   224     3     1     1    22    45  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    374      - A - - -
    ML   225   224 3   227     3     1     1    20    42  -3.214  -0.189  -6.083                          1.552 -1.307 -2.266 -1.135 
     D   226   224 3   227     3     0     0    16    39  -6.132 -11.495  -0.021                         
    IL   227   227 3   227     3     1     1    21    44  -1.168  -1.182  -3.129                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    381      - A - - -
    ML   228   227 3   230     2     1     1     1     1       *   0.000                                  1.473 -0.834 -1.484 -1.708 
     D   229   227 3   230     2     0     0     0     0       *   0.000                                 
    IL   230   230 3   230     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    61 ]      -      - - - - -
     E   231   230 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   62 ]      -      - - - - -
     S   232   181 1   233     3     0     2    46    90  -1.626  -0.599  -5.981                         
    IL   233   233 2   233     3     1     3    46    91  -3.021  -0.206  -6.705                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    403      - C - - -
    ML   234   233 2   236     5     1     5    45    90 -19.015  -0.000 -18.830 -19.042 -19.934         -2.635  1.851 -6.963 -2.155 
     D   235   233 2   236     5     0     1    44    89 -13.797  -9.641 -13.058  -0.003 -11.346         
    IL   236   236 3   236     5     1     1    45    90  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   64 ]    404    432 G C - -
    MP   237   236 3   241     6     2     4    44    89 -19.943 -19.882  -0.000 -13.682 -15.031 -15.541 -13.907 -4.369 -11.579  0.692 -14.857 -14.321 -0.208 -14.416 -10.831  3.540 -11.759  0.277 -0.716 -13.580 -11.930 -6.033 
    ML   238   236 3   241     6     1     1    43    88  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   239   236 3   241     6     1     2    44    89 -15.693  -2.456  -9.406 -14.401  -0.293 -12.614 -10.022  1.472  0.290 -8.995 
     D   240   236 3   241     6     0     0    42    87  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   241   241 5   241     6     1     1    44    88  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   242   242 6   242     5     1     1    43    88  -7.738  -0.010 -11.250  -9.417 -10.523          0.000  0.000  0.000  0.000 
                                             [ MATP   65 ]    405    430 a u - -
    MP   243   242 6   247     6     2     4    42    87 -19.948 -19.887  -0.001 -18.663 -10.135 -19.338 -11.693 -9.977 -11.696  2.198 -6.810 -6.135  2.075 -11.503 -6.457  1.729 -14.460 -0.301  1.010 -14.179 -0.418 -1.878 
    ML   244   242 6   247     6     1     1    41    86  -7.730  -8.076  -2.790  -0.286  -7.926  -5.455  1.560 -1.801 -1.490 -1.293 
    MR   245   242 6   247     6     1     1    43    88 -15.405 -14.134  -0.683 -14.112  -1.408 -12.325 -10.210  1.999 -10.844 -8.922 
     D   246   242 6   247     6     0     0    41    86  -9.729  -8.427  -1.220  -4.906  -4.924  -0.999 
    IL   247   247 5   247     6     1     1    42    87  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   248   248 6   248     5     1     1    42    87  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   66 ]    406    429 G C - -
    MP   249   248 6   253     6     2     3    40    85  -7.237  -7.278  -0.022 -18.677  -8.714 -19.351 -13.925 -10.573 -5.584  1.895 -14.874 -9.380 -3.682 -14.433 -8.964  3.518 -5.108 -1.530 -3.294 -13.597 -11.948 -2.045 
    ML   250   248 6   253     6     1     1    40    85  -7.730  -8.076  -2.790  -0.286  -7.926  -5.455 -0.969 -2.081  1.531 -1.465 
    MR   251   248 6   253     6     1     1    44    89 -14.197 -12.926  -8.835 -12.905  -0.201  -2.973  1.796 -7.689 -0.948 -7.576 
     D   252   248 6   253     6     0     0    42    87  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   253   253 5   253     6     1     1    39    84  -9.503  -9.766  -0.005 -11.421 -12.197 -11.857  0.000  0.000  0.000  0.000 
    IR   254   254 6   254     5     1     1    40    85  -1.235  -0.800 -12.883 -11.051 -12.157          0.000  0.000  0.000  0.000 
                                             [ MATP   67 ]    408    426 G C - -
    MP   255   254 6   259     6     2     3    38    83 -19.957 -19.897  -0.002 -18.673  -9.618 -19.348 -17.697 -8.099 -19.365  0.236 -19.428 -15.749 -3.384 -19.070 -15.876  3.879 -16.092 -7.326 -14.152 -16.191 -16.225 -18.201 
    ML   256   254 6   259     6     1     1    39    84  -7.730  -8.076  -2.790  -0.286  -7.926  -5.455 -0.969 -2.081  1.531 -1.465 
    MR   257   254 6   259     6     1     1    43    88 -14.480 -13.209  -9.118 -13.188  -1.808  -0.489 -9.028  1.997 -9.577 -7.889 
     D   258   254 6   259     6     0     0    42    87 -13.884 -12.582  -8.379  -9.061  -9.078  -0.010 
    IL   259   259 5   259     6     1     1    39    84  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   260   260 6   260     5     1     1    39    84  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   68 ]    409    425 G C - -
    MP   261   260 6   265     4     2     2    36    81 -19.186  -8.176  -0.014  -7.296                 -17.933 -14.510 -20.498 -12.005 -19.541 -15.659 -13.814 -19.845 -5.332  3.994 -16.069 -6.160 -14.185 -5.294 -16.275 -19.733 
    ML   262   260 6   265     4     1     1    38    82  -4.980  -5.162  -0.196  -3.892                 -0.969 -2.081  1.531 -1.465 
    MR   263   260 6   265     4     1     1    42    87 -11.315 -10.344  -1.526  -0.618                 -6.164  1.409 -7.237  0.405 
     D   264   260 6   265     4     0     0    42    87 -12.230 -11.911  -9.927  -0.002                 
    IL   265   265 5   265     4     1     1    38    83  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   266   266 6   266     3     1     1    35    80  -6.650  -0.017  -9.350                          0.000  0.000  0.000  0.000 
                                             [ MATL   69 ]    410      - U - - -
    ML   267   266 6   269     3     1     3    33    78 -20.087  -0.000 -18.741                         -17.369 -7.251 -18.942  1.998 
     D   268   266 6   269     3     0     0    42    87 -15.519 -11.032  -0.001                         
    IL   269   269 3   269     3     1     1    39    84  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   70 ]    411      - U - - -
    ML   270   269 3   272     3     1     2    32    77 -20.087  -0.000 -18.741                         -7.847 -8.033 -7.995  1.996 
     D   271   269 3   272     3     0     0    42    87 -15.519  -4.139  -0.084                         
    IL   272   272 3   272     3     1     1    39    84  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   71 ]    412      - C - - -
    ML   273   272 3   275     3     1     1    31    76  -7.923  -0.008  -9.325                         -5.822  1.981 -6.299 -5.480 
     D   274   272 3   275     3     0     0    42    87 -15.435 -10.948  -0.001                         
    IL   275   275 3   275     3     1     1    43    88  -6.892  -6.248  -0.031                          0.000  0.000  0.000  0.000 
                                             [ MATL   72 ]    414      - G - - -
    ML   276   275 3   278     3     1     2    10    55 -20.080  -0.000 -18.735                         -0.168 -6.284  1.625 -6.280 
     D   277   275 3   278     3     0     0    42    87  -0.271 -11.415  -2.548                         
    IL   278   278 3   278     3     1     1    43    88  -0.592  -1.572 -13.182                          0.000  0.000  0.000  0.000 
                                             [ MATL   73 ]    419      - A - - -
    ML   279   278 3   281     3     1     1     6    10  -8.324  -0.005 -11.946                          1.984 -6.314 -5.653 -6.313 
     D   280   278 3   281     3     0     0     5     8 -13.357  -0.007  -7.749                         
    IL   281   281 3   281     3     1     1     6    10  -6.517  -0.018  -9.217                          0.000  0.000  0.000  0.000 
                                             [ MATL   74 ]    421      - A - - -
    ML   282   281 3   284     3     1     1     5     8  -7.441  -0.009 -11.365                          1.843 -4.190 -3.248 -1.991 
     D   283   281 3   284     3     0     0     3     7  -9.697  -5.210  -0.041                         
    IL   284   284 3   284     3     1     1     5     8  -7.385  -0.010 -10.085                          0.000  0.000  0.000  0.000 
                                             [ MATL   75 ]    423      - U - - -
    ML   285   284 3   287     2     1     1     1     1       *   0.000                                 -7.018 -3.140 -7.665  1.954 
     D   286   284 3   287     2     0     0     0     0       *   0.000                                 
    IL   287   287 3   287     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    76 ]      -      - - - - -
     E   288   287 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Ser
ACC   bact-Ser-r2-022416
LENG  90
MAXL  1304
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 19:39:59 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ser-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ser-r2-022416.sto
NSEQ  17183
EFFN  9.565903
CKSUM 1476923651
STATS LOCAL MSV       -8.8602  0.71888
STATS LOCAL VITERBI  -10.3118  0.71888
STATS LOCAL FORWARD   -3.1513  0.71888
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.48114  1.35020  1.27181  1.45624
          1.38629  1.38629  1.38629  1.38629
          0.01791  4.72429  4.72429  1.46634  0.26236  0.00000        *
      1   3.00086  3.84937  0.09769  3.81540      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01878  4.72429  4.63312  1.46634  0.26236  1.09861  0.40547
      2   2.98290  3.99223  0.09330  3.91325      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.02501  4.74375  4.13528  1.46634  0.26236  1.12993  0.39016
      3   0.33492  2.70441  2.08194  2.37510      3 A - - (
          1.38629  1.38629  1.38629  1.38629
          0.05296  4.44388  3.22306  1.13521  0.38766  1.36942  0.29337
      4   1.94959  2.84203  0.31908  2.62361      5 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01817  4.71019  4.71019  1.46634  0.26236  2.01484  0.14311
      5   0.85438  2.57078  0.88147  2.47927      6 a - - (
          1.38629  1.38629  1.38629  1.38629
          0.01761  4.74125  4.74125  1.46634  0.26236  2.01484  0.14311
      6   1.59423  2.38236  0.50954  2.26497      7 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.05199  4.40208  3.25936  1.08256  0.41359  1.12697  0.39158
      7   1.46756  2.47010  0.65191  1.80859      9 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04378  4.40392  3.48654  1.09732  0.40611  2.16387  0.12203
      8   2.94339  3.06263  3.52933  0.13786     11 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.03528  3.65688  4.72737  0.71740  0.66947  0.70332  0.68307
      9   1.45316  2.67053  0.48690  2.49584     15 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.08023  4.78623  2.67726  1.46634  0.26236  1.50056  0.25232
     10   2.01402  1.11630  1.10537  1.57035     16 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.07850  4.18949  2.80770  0.92458  0.50534  1.07957  0.41512
     11   2.20203  0.64406  1.95293  1.50323     18 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02801  4.21371  4.35628  0.95951  0.48302  0.67999  0.70648
     12   1.80748  0.84428  1.85189  1.38980     20 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.09490  2.66864  3.85438  0.22939  1.58483  1.85235  0.17063
     13   1.47322  1.72328  1.01113  1.47611     22 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.26664  1.49506  4.62405  0.29924  1.35241  0.96961  0.47679
     14   0.07434  4.06365  3.43131  3.81144     28 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01800  4.78203  4.66063  1.46634  0.26236  1.14974  0.38085
     15   2.33391  3.20750  0.23274  2.65543     29 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01777  4.79252  4.67504  1.46634  0.26236  1.50954  0.24976
     16   1.80081  1.67154  2.57436  0.56093     30 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.20452  1.74551  4.56506  0.63245  0.75777  0.40634  1.09686
     17   3.95351  4.72680  0.04536  4.11615     35 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.03134  4.81719  3.78266  1.46634  0.26236  1.17988  0.36718
     18   3.79356  4.99348  0.04081  4.53844     36 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01855  4.80244  4.58847  1.46634  0.26236  1.58508  0.22933
     19   2.35484  1.06400  2.64906  0.71478     37 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.14055  4.80080  2.09642  1.46634  0.26236  0.74417  0.64460
     20   2.00444  1.33100  2.47907  0.65926     38 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.23003  1.62795  4.69293  1.51711  0.24762  0.40502  1.09951
     21   1.62899  2.27603  0.80046  1.37810     54 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.78736  3.57109  1.46634  0.26236  0.34233  1.23827
     22   0.08684  3.86905  3.26354  3.72777     55 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.36412  1.37851  2.93293  4.21825  0.01483  0.50119  0.93093
     23   0.92153  1.87227  1.43172  1.56342    176 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.25532  3.03211  1.73092  0.63591  0.75386  2.04091  0.13916
     24   1.66407  2.00589  0.68687  1.75477    179 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.02291  4.38279  4.58963  1.22679  0.34705  3.24218  0.03986
     25   1.67105  2.09687  0.54402  2.21920    181 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04022  4.25774  3.67820  1.10184  0.40386  3.33950  0.03610
     26   1.78145  1.10299  1.07773  1.83658    183 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.07324  4.57556  2.80807  1.46634  0.26236  0.49578  0.93929
     27   1.02544  2.80222  0.67366  2.64718    184 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.12016  2.26264  4.69480  2.52864  0.08313  1.08062  0.41458
     28   1.52936  1.03192  1.56846  1.52033    209 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.06715  4.73899  2.87888  1.46634  0.26236  2.53087  0.08294
     29   1.85948  0.73707  2.00080  1.46749    210 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.14292  4.69038  2.08756  1.46634  0.26236  2.88975  0.05719
     30   1.89417  1.52171  0.74611  1.85142    211 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.02594  4.56843  4.18415  1.46634  0.26236  3.30073  0.03755
     31   2.02427  2.08709  0.42708  2.39198    212 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.03252  4.56485  3.83559  1.46634  0.26236  3.42867  0.03297
     32   1.74539  1.21775  1.99915  0.93120    213 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.05064  3.62441  3.78462  0.97701  0.47230  0.84416  0.56197
     33   2.91920  0.58649  3.59103  1.01562    216 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01895  4.66847  4.66847  1.46634  0.26236  2.24401  0.11209
     34   3.43670  3.21001  3.86258  0.09821    217 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01875  4.67928  4.67928  1.46634  0.26236  2.95443  0.05352
     35   1.37554  1.28669  1.56891  1.33621    218 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.01875  4.67928  4.67928  1.46634  0.26236  1.68745  0.20455
     36   1.36457  1.59536  1.31707  1.29552    219 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.03802  4.70268  3.56718  1.46634  0.26236  2.20857  0.11637
     37   1.14439  1.61366  1.51024  1.34107    220 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01856  4.69096  4.68783  1.46634  0.26236  2.88621  0.05740
     38   0.17027  3.76486  2.24973  3.57671    221 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01853  4.69093  4.69093  1.46634  0.26236  0.58913  0.80925
     39   0.28776  2.70846  2.47071  2.31368    222 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.29508  1.45983  3.76143  4.36496  0.01280  1.05968  0.42552
     40   1.09169  2.05881  1.07991  1.62393    344 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.03817  4.77300  3.54076  1.46634  0.26236  2.10954  0.12930
     41   2.10893  0.63526  1.99127  1.54969    345 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03341  3.73399  4.71456  0.61198  0.78149  1.69827  0.20212
     42   2.00742  0.88178  1.30677  1.70966    347 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01726  4.76099  4.76099  1.46634  0.26236  1.46354  0.26320
     43   1.65031  2.30445  0.66261  1.64666    348 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.06124  3.83455  3.27570  0.65674  0.73093  2.12552  0.12712
     44   1.72330  1.90806  0.91634  1.29764    350 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01758  4.74279  4.74279  1.46634  0.26236  0.18019  1.80251
     45   1.92097  1.44743  2.37291  0.64407    351 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.50753  0.95262  4.39880  0.10234  2.33018  1.09861  0.40547
     46   1.39780  2.38082  0.59101  2.23849    356 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.03186  4.81511  3.76134  1.46634  0.26236  0.97363  0.47435
     47   1.76467  1.88092  0.89157  1.32314    357 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01655  4.80257  4.80257  1.46634  0.26236  1.39020  0.28638
     48   1.35112  1.98489  0.79207  1.89215    358 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.02406  4.80470  4.16158  1.46634  0.26236  1.56871  0.23359
     49   2.45605  0.90725  1.23988  1.50881    359 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.08357  4.47792  2.67626  1.11470  0.39752  1.74097  0.19280
     50   1.82872  1.49386  1.00767  1.38706    361 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.28908  3.83184  1.47240  0.94079  0.49482  2.49867  0.08577
     51   1.71185  1.38836  1.09717  1.44320    365 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.23344  1.68055  3.82006  0.29329  1.36966  0.09148  2.43705
     52   2.07098  1.81485  0.97708  1.09462    372 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01658  4.80080  4.80080  1.46634  0.26236  1.63108  0.21781
     53   1.33754  1.32905  2.46088  0.94825    373 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01658  4.80107  4.80107  1.46634  0.26236  1.56376  0.23490
     54   0.46946  2.08988  2.40155  1.83022    374 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.11051  2.46312  3.93952  0.68456  0.70181  1.63821  0.21608
     55   0.53402  1.90693  2.14430  1.91006    381 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.57583  1.68004  1.38073  0.29371  1.36841  1.05055  0.43039
     56   1.68586  1.23069  1.16206  1.56168    385 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.04416  3.95524  3.72773  0.90026  0.52166  0.40994  1.08972
     57   1.74352  1.30637  1.27588  1.29059    387 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.05840  3.03904  4.72792  1.95387  0.15283  0.51155  0.91520
     58   1.93534  1.33217  0.74021  2.16536    397 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.02488  4.79039  4.11876  1.46634  0.26236  1.22198  0.34906
     59   2.45132  0.95513  1.61079  1.11070    398 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01676  4.79013  4.79013  1.46634  0.26236  1.88209  0.16520
     60   1.38861  1.01643  1.70590  1.57462    399 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01680  4.79013  4.78530  1.46634  0.26236  0.72963  0.65795
     61   2.49741  0.87938  1.60224  1.19992    400 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.33481  1.31619  4.11223  0.12847  2.11562  0.89596  0.52461
     62   2.87775  0.18425  3.90773  2.38681    403 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01949  4.80624  4.49850  1.46634  0.26236  1.52879  0.24437
     63   1.81139  2.48128  0.40541  2.45066    404 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01658  4.80329  4.79857  1.46634  0.26236  1.29526  0.31997
     64   1.46372  1.33516  1.34982  1.40152    405 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01723  4.80621  4.72097  1.46634  0.26236  0.83213  0.57114
     65   1.50227  2.81097  0.44625  2.56129    406 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02392  4.30022  4.59786  0.94524  0.49198  1.30737  0.31544
     66   2.53140  4.03702  0.12002  4.14116    408 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01746  4.81175  4.69099  1.46634  0.26236  1.37050  0.29300
     67   3.69605  4.69831  0.04527  4.57261    409 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02174  4.81070  4.31534  1.46634  0.26236  1.28183  0.32508
     68   4.20477  3.89912  4.75050  0.04482    410 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01649  4.80652  4.80652  1.46634  0.26236  1.52136  0.24643
     69   3.73193  3.58660  4.23008  0.06848    411 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01649  4.80652  4.80652  1.46634  0.26236  1.43611  0.27161
     70   3.99229  0.06170  4.34883  3.55933    412 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01778  4.80725  4.66199  1.46634  0.26236  0.58967  0.80858
     71   1.53009  3.53610  0.33542  3.23602    414 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.03205  3.82164  4.64030  0.98762  0.46595  1.14941  0.38100
     72   0.04705  4.34066  4.00551  4.21885    419 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01914  4.54138  4.79131  1.15743  0.37731  0.90846  0.51608
     73   0.20224  3.05177  2.94326  2.48736    421 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02142  4.35775  4.78147  0.98804  0.46570  1.10708  0.40126
     74   3.37011  2.90500  3.86941  0.11654    423 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02496  4.51995  4.28597  1.13429  0.38809  1.05775  0.42654
     75   4.60057  0.05746  4.55826  3.34349    425 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01637  4.81364  4.81364  1.46634  0.26236  0.83471  0.56916
     76   4.26727  0.13687  3.89695  2.36879    426 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02166  4.31646  4.81856  1.09352  0.40802  1.04498  0.43340
     77   2.89258  0.51786  2.60120  1.29247    429 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01629  4.81928  4.81734  1.46634  0.26236  1.10106  0.40424
     78   1.67921  1.52542  1.16605  1.25754    430 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01924  4.51153  4.81927  1.12577  0.39216  1.09245  0.40856
     79   2.65088  0.51194  2.33395  1.45599    432 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01767  4.81910  4.66260  1.46634  0.26236  1.09861  0.40547
     80   1.93849  0.76666  2.28104  1.24016    433 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02030  4.81773  4.42231  1.46634  0.26236  1.15355  0.37909
     81   2.49195  0.58862  2.18376  1.38814    434 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01925  4.52522  4.79903  1.14429  0.38339  1.18390  0.36540
     82   2.65061  1.02022  2.37828  0.74199    436 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.01636  4.81438  4.81438  1.46634  0.26236  1.11812  0.39585
     83   2.80023  0.36306  2.67340  1.74501    437 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01686  4.81568  4.75405  1.46634  0.26236  1.22083  0.34953
     84   2.50429  2.28388  2.57421  0.30088    438 U - - )
          1.38629  1.38629  1.38629  1.38629
          0.01634  4.81517  4.81517  1.46634  0.26236  0.93330  0.49965
     85   3.69020  0.12027  3.68705  2.75972    439 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01630  4.81807  4.81807  1.46634  0.26236  1.03877  0.43679
     86   3.57710  0.15281  3.41732  2.51390    440 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02176  4.30902  4.81884  0.94819  0.49011  1.09861  0.40547
     87   2.24073  3.35607  0.26016  2.43247    442 G - - :
          1.38629  1.38629  1.38629  1.38629
          0.02725  4.30948  4.30948  1.46634  0.26236  1.09861  0.40547
     88   3.91833  0.07133  4.43055  3.29518    443 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02725  4.30948  4.30948  1.46634  0.26236  1.09861  0.40547
     89   3.91833  0.07133  4.43055  3.29518    444 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02725  4.30948  4.30948  1.46634  0.26236  1.09861  0.40547
     90   0.05854  4.16300  3.81129  3.95372    445 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01372  4.29595        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Thr
ACC      bact-Thr-r2-022416
STATES   242
NODES    65
CLEN     76
W        1213
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 21:04:27 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Thr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Thr-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Thr-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     13370
EFFN     13370.000000
CKSUM    93420263
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -8.9762 0.71898
ECMLC    0.63242    -8.09556     1.88973     1600000      663298  0.001809
ECMGC    0.36555   -23.12388   -10.85453     1600000       35472  0.011276
ECMLI    0.58406    -8.42448     2.27194     1600000      619953  0.001936
ECMGI    0.38228   -20.87539    -9.35105     1600000       32762  0.012209
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1213  2618 -18.633 -19.878  -0.850  -1.167                 
    IL     1     1 2     1     4    13    33  1217  2622  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    13    34  1218  2623  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    245 - A - -
    MR     3     2 3     5     3    15    34  1217  2621 -19.191  -0.000 -17.508                          2.000 -14.816 -14.090 -14.147 
     D     4     2 3     5     3    11    29  1213  2618 -19.968 -15.146  -0.000                         
    IR     5     5 3     5     3    13    33  1217  2622  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    244 - C - -
    MR     6     5 3     8     3    14    33  1216  2620 -19.191  -0.000 -17.508                         -15.959  2.000 -17.221 -14.017 
     D     7     5 3     8     3    11    29  1213  2618 -19.968 -15.146  -0.000                         
    IR     8     8 3     8     3    13    32  1216  2621  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    243 - C - -
    MR     9     8 3    11     3    13    32  1215  2619 -19.191  -0.000 -17.508                         -15.959  2.000 -17.221 -14.017 
     D    10     8 3    11     3    11    29  1213  2618 -19.968  -0.011  -7.101                         
    IR    11    11 3    11     3    11    27  1214  2619  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    242 - A - -
    MR    12    11 3    14     5    12    31  1214  2618  -5.341  -0.087 -18.492  -4.891 -19.595          1.248 -1.695 -3.229  0.274 
     D    13    11 3    14     5     8    22  1197  2602 -11.012  -6.367  -8.638 -10.069  -0.023         
    IR    14    14 3    14     5    10    25  1207  2612  -0.602  -2.722 -15.206 -13.374  -2.401          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    237 G C - -
    MP    15    14 3    19     6    16    33  1213  2618 -19.534 -19.473  -0.000 -18.250 -18.530 -18.925 -17.484 -14.092 -19.870 -11.577 -19.023 -15.247 -2.889 -19.274 -6.747  3.976 -15.651 -4.358 -3.774 -15.717 -15.805 -19.011 
    ML    16    14 3    19     6    10    27  1210  2615  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    10    26  1207  2612 -16.125 -14.854  -1.058 -14.832  -1.342  -2.999 -11.135  1.999 -11.851 -9.723 
     D    18    14 3    19     6     8    22  1197  2602 -17.750 -16.448 -12.245 -12.927 -12.945  -0.001 
    IL    19    19 5    19     6    11    28  1211  2616  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    11    28  1211  2616  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    236 C G - -
    MP    21    20 6    25     6    14    31  1211  2616 -19.559  -5.619  -0.064 -11.521  -5.459 -18.949 -15.975 -4.179 -15.542 -11.990 -6.482 -9.612  3.595 -14.882 -15.564  0.674 -1.524 -2.224  0.283 -15.946 -1.066 -14.336 
    ML    22    20 6    25     6    11    27  1209  2613  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    23    20 6    25     6    13    27  1203  2608 -14.786 -13.515  -2.713 -13.493  -0.240 -11.706 -0.758 -9.240  1.767 -8.486 
     D    24    20 6    25     6     8    22  1197  2602 -18.069 -16.768 -12.565 -13.247 -13.264  -0.001 
    IL    25    25 5    25     6    11    28  1210  2615  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    13    30  1210  2615  -9.823  -0.002 -13.334 -11.502 -12.608          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    234 C G - -
    MP    27    26 6    31     6    12    29  1209  2614 -19.528 -19.467  -0.045 -18.244 -18.523  -5.030 -13.949 -13.657 -1.668 -1.602 -7.347 -14.757  3.402 -13.447 -13.799 -1.179 -14.303 -11.230  1.882 -4.441 -0.741 -7.401 
    ML    28    26 6    31     6    11    28  1208  2613  -9.113  -9.459  -0.123  -3.868  -9.309  -6.839 -1.378  0.532 -2.214  0.967 
    MR    29    26 6    31     6    13    26  1201  2606 -16.108 -14.837  -0.640 -14.815  -1.481 -13.028 -1.983 -7.528  0.194  1.377 
     D    30    26 6    31     6     8    22  1197  2602 -18.069 -16.768 -12.565 -13.247 -13.264  -0.001 
    IL    31    31 5    31     6    11    27  1207  2612  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    11    27  1207  2611  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    233 G C - -
    MP    33    32 6    37     6    15    28  1207  2612  -3.979 -19.456  -0.096 -18.233 -10.341 -18.907 -13.480 -1.446 -13.299  1.150 -9.381 -3.470  0.689 -10.662 -13.737  3.297 -13.983  0.142 -1.673 -5.938 -1.245 -5.571 
    ML    34    32 6    37     6    10    24  1200  2605  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    11    24  1184  2588 -14.629 -13.358  -3.752 -13.337  -0.112 -11.550 -9.217  1.998 -9.778 -8.055 
     D    36    32 6    37     6     8    22  1197  2602 -19.313 -18.011  -0.354 -14.490 -14.507  -2.201 
    IL    37    37 5    37     6    14    27  1206  2611 -12.306 -12.569  -0.001 -14.224 -15.000 -14.661  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    10    25  1204  2608  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      6    232 g c - -
    MP    39    38 6    43     6    14    26  1205  2610 -19.576 -19.515  -0.001 -18.292 -11.300 -18.967 -13.542 -7.840 -6.827  2.331 -14.459 -13.958  1.234 -14.041 -13.796  2.617 -7.317  0.199 -0.719 -13.217 -0.559 -5.374 
    ML    40    38 6    43     6     9    23  1198  2603  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    10    23  1180  2585 -14.612 -13.341  -9.249 -13.319  -0.003 -11.533 -6.461  1.406  0.081 -1.833 
     D    42    38 6    43     6     7    20  1156  2561 -17.112 -15.811  -1.664  -2.138 -12.307  -1.129 
    IL    43    43 5    43     6    10    24  1200  2605  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    10    24  1200  2605  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      7    231 u a - -
    MP    45    44 6    49     6    12    24  1203  2608  -4.100 -19.520  -0.094 -18.296  -7.636 -18.971 -2.991 -6.673 -5.700 -0.102 -3.446 -9.491  2.401 -0.222 -11.469 -0.815 -9.828 -6.852  2.461 -4.899  1.042 -0.992 
    ML    46    44 6    49     6    11    23  1202  2607 -11.855 -12.201  -0.018  -6.610 -12.051  -9.580 -5.852 -7.590  1.988 -6.607 
    MR    47    44 6    49     6     9    22  1179  2584 -14.658 -13.387  -1.816 -13.365  -0.483 -11.579  0.281 -8.356  1.474 -8.044 
     D    48    44 6    49     6     7    19   781  2186 -15.985 -14.684 -10.481 -11.163 -11.180  -0.002 
    IL    49    49 5    49     6    11    24  1204  2609  -0.656 -13.965  -1.454 -15.620 -16.397 -16.057  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    10    23  1198  2602  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     13    230 g c - -
    MP    51    50 6    55     4    10    22  1201  2606  -7.528 -19.019  -0.037  -5.675                 -13.547 -3.754 -13.366  1.683 -14.487 -13.962 -1.741 -14.053 -13.803  2.661 -5.443  0.152  2.125 -13.220 -0.786 -6.206 
    ML    52    50 6    55     4     9    21  1188  2593  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4     8    21  1167  2572 -12.850 -11.879  -0.656  -1.454                  0.296  1.255 -6.859 -1.405 
     D    54    50 6    55     4     7    19   749  2153 -11.408 -11.089  -9.105  -0.004                 
    IL    55    55 5    55     4     9    21  1202  2607  -8.167  -8.851  -0.009 -11.336                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3     9    21  1195  2600  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     15      - U - - -
    ML    57    56 6    59     3     8    20  1201  2606  -1.675  -0.542 -18.359                         -6.950 -4.196 -6.107  1.972 
     D    58    56 6    59     3     7    19   439  1844 -16.066  -0.001 -10.458                         
    IL    59    59 3    59     3    10    25  1288  2693  -0.019  -6.344 -10.454                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]    105      - A - - -
    ML    60    59 3    62     2     7    19   205   388 -20.380  -0.000                                  1.733 -3.724 -0.797 -5.310 
     D    61    59 3    62     2     6    18   204   387 -13.521  -0.000                                 
    IL    62    62 3    62     2     7    19   205   389  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64     6    18   204   387                                                 
                                             [ BEGR   46 ]      -      - - - - -
     S    64    63 1    65     3     0     1   160   341 -19.748  -0.000 -18.402                         
    IL    65    65 2    65     3     1     1   162   343  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    184      - A - - -
    ML    66    65 2    68     3     1     1   160   341 -19.748  -0.264  -2.578                          1.551 -2.018 -1.544 -1.058 
     D    67    65 2    68     3     0     0   164   345  -6.174  -1.687  -0.566                         
    IL    68    68 3    68     3     1     1   160   340  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    185      - G - - -
    ML    69    68 3    71     3     1     2   156   337  -3.305  -0.154 -18.138                         -4.204 -3.477  1.879 -2.499 
     D    70    68 3    71     3     0     0   167   347  -1.633  -0.739  -3.673                         
    IL    71    71 3    71     3     1     1   178   358  -0.147  -3.494  -6.924                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    207      - G - - -
    ML    72    71 3    74     3     1     1    26    44 -19.712  -0.050  -4.877                         -1.386 -4.406  1.723 -1.897 
     D    73    71 3    74     3     0     0    25    43 -15.837 -11.350  -0.001                         
    IL    74    74 3    74     3     1     1    36    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    208      - U - - -
    ML    75    74 3    77     3     1     1    25    43 -19.662  -0.064  -4.534                         -0.982 -2.168 -4.242  1.686 
     D    76    74 3    77     3     0     0    24    42 -17.061  -0.268  -2.562                         
    IL    77    77 3    77     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    209      - C - - -
    ML    78    77 3    80     5     1     1    24    42 -18.606  -0.000 -18.422 -15.521 -11.834         -1.294  1.528 -4.013 -0.631 
     D    79    77 3    80     5     0     0    21    39 -14.816 -10.660 -14.077  -0.099  -3.928         
    IL    80    80 3    80     5     1     1    27    42  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    210    229 g c - -
    MP    81    80 3    85     6     2     2    23    41 -19.534  -7.430  -0.008 -18.250 -18.529 -18.924 -11.328 -1.286 -13.316  1.835 -11.465 -5.087  0.709 -12.844 -13.754  2.656 -11.489  1.868 -2.013 -11.186 -6.761 -2.763 
    ML    82    80 3    85     6     1     1    23    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     1    20    39 -16.615 -15.344  -2.828 -15.322  -0.219 -13.535 -12.599 -11.237 -14.150  2.000 
     D    84    80 3    85     6     0     0    20    39 -15.518 -14.216 -10.013  -0.176 -10.712  -3.141 
    IL    85    85 5    85     6     1     1    25    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     1    22    40  -8.009  -0.009 -11.520  -9.688 -10.794          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    211    227 c g - -
    MP    87    86 6    91     6     2     2    20    39 -19.544  -6.550  -0.015 -18.260 -18.539 -18.934 -13.827 -7.389 -13.826  0.826 -3.950 -11.717  2.817 -9.440 -13.692  1.440 -11.531  0.763  1.213 -8.664 -1.743 -3.665 
    ML    88    86 6    91     6     1     1    20    39 -12.216 -12.562  -7.276  -0.012 -12.412  -9.941 -6.176 -7.930  1.991 -6.935 
    MR    89    86 6    91     6     1     1    19    37 -16.396 -15.125 -11.034 -15.103  -0.001 -13.317 -12.366 -11.013 -13.905  2.000 
     D    90    86 6    91     6     0     0    19    37 -12.405 -11.103  -6.900  -7.582  -7.600  -0.028 
    IL    91    91 5    91     6     1     1    23    39  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1    20    39  -8.886  -6.973  -0.016 -10.565 -11.670          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    212    225 c g - -
    MP    93    92 6    97     6     2     2    18    37 -19.528  -8.268  -0.005 -18.244 -18.524 -18.919 -13.516 -4.052 -13.345  1.568 -14.195 -13.953  2.381 -12.288 -13.744  2.307 -5.901  0.724 -0.736 -13.216 -3.733 -1.072 
    ML    94    92 6    97     6     1     1    19    38 -14.268  -0.873  -1.147  -9.023 -14.464 -11.993  1.210 -8.430  0.749 -8.338 
    MR    95    92 6    97     6     1     1    18    36 -16.396 -15.125 -11.034 -15.103 -10.237  -0.002 -12.366 -11.013 -13.905  2.000 
     D    96    92 6    97     6     0     0    19    37 -12.405 -11.103  -6.900  -7.582  -7.600  -0.028 
    IL    97    97 5    97     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1    18    37  -8.914  -0.005 -12.425 -10.593 -11.699          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    213    223 G C - -
    MP    99    98 6   103     6     2     2    16    35 -19.549 -19.488  -0.000 -18.264 -18.544 -18.939 -13.535 -0.338 -13.355  2.244 -14.484 -6.681 -1.426 -14.044 -13.786  3.298 -14.032 -7.459 -2.073 -11.071 -6.695 -12.320 
    ML   100    98 6   103     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   101    98 6   103     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   102    98 6   103     6     0     0    15    34 -19.022 -17.720 -13.517 -14.199 -14.217  -0.000 
    IL   103   103 5   103     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1    22    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    214    222 G C - -
    MP   105   104 6   109     4     2     2    14    33 -18.779 -18.986  -0.000 -17.400                 -17.495 -14.104 -19.890 -4.108 -19.119 -15.263 -13.408 -19.315 -4.008  3.972 -15.665 -6.828 -13.774 -2.451 -15.861 -19.020 
    ML   106   104 6   109     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   107   104 6   109     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   108   104 6   109     4     0     0    15    34 -14.444 -14.125 -12.141  -0.000                 
    IL   109   109 5   109     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    215      - U - - -
    ML   111   110 6   113     3     1     1    12    30 -19.688  -0.000 -18.342                         -5.559 -6.774 -14.795  1.989 
     D   112   110 6   113     3     0     0    12    30 -16.557 -12.070  -0.000                         
    IL   113   113 3   113     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    216      - U - - -
    ML   114   113 3   116     3     1     1    11    29 -19.688  -0.000 -18.342                         -13.759 -4.631 -6.647  1.982 
     D   115   113 3   116     3     0     0    11    29 -16.557 -12.070  -0.000                         
    IL   116   116 3   116     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    217      - C - - -
    ML   117   116 3   119     3     1     1     9    28 -19.688  -0.000 -18.342                         -5.187  1.975 -5.605 -5.610 
     D   118   116 3   119     3     0     0     9    28 -16.557 -12.070  -0.000                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    218      - G - - -
    ML   120   119 3   122     3     1     1     8    26 -19.688  -0.000 -18.342                          0.555 -6.443  1.321 -5.551 
     D   121   119 3   122     3     0     0     8    27 -16.557 -12.070  -0.000                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    219      - A - - -
    ML   123   122 3   125     3     1     1     7    25 -19.688  -0.000 -18.342                          1.979 -6.447 -5.370 -5.559 
     D   124   122 3   125     3     0     0     7    26 -16.557 -12.070  -0.000                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    220      - u - - -
    ML   126   125 3   128     3     1     1     5    23 -19.688  -0.000 -18.342                         -0.393 -0.605  0.041  0.634 
     D   127   125 3   128     3     0     0     6    25 -16.557 -12.070  -0.000                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    221      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -5.097 -1.690 -6.925  1.869 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     1     9   166   343   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   185     1     9   166   343                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     2    42    74  -0.101 -15.597  -3.884 -17.787                 
                                             [ MATP   18 ]    106    136 G C - -
    MP   136   135 1   140     6     2     2    42    74 -19.508 -19.447  -0.022 -18.224  -6.797  -7.402 -17.311 -5.945 -19.136 -3.674 -18.912 -15.236 -1.103 -18.871 -15.419  3.889 -15.617 -1.661 -1.745 -6.809 -15.699 -18.122 
    ML   137   135 1   140     6     1     1    40    73  -6.629  -6.975  -0.886  -1.384  -6.825  -4.355  0.100 -0.778  0.585 -0.243 
    MR   138   135 1   140     6     1     2    40    73 -17.136 -15.865  -1.244 -15.844  -0.791 -14.057 -2.108 -7.087 -1.711  1.789 
     D   139   135 1   140     6     0     0    37    69  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1    41    74  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1    41    74  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]    107    135 C G - -
    MP   142   141 6   146     6     2     3    40    72  -5.837 -19.470  -0.029 -18.246  -8.829 -18.921 -15.105 -14.929 -14.905 -2.176 -7.415 -15.468  3.782 -7.997 -14.842 -1.041 -15.223 -12.614 -0.664 -2.819 -1.093 -1.830 
    ML   143   141 6   146     6     1     1    38    71  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   144   141 6   146     6     1     1    39    71 -16.626 -15.355 -11.263 -15.333  -0.001 -13.546  0.998  0.181 -1.477 -0.974 
     D   145   141 6   146     6     0     0    33    66 -16.139 -14.837 -10.634 -11.316 -11.334  -0.002 
    IL   146   146 5   146     6     1     2    42    75  -1.002  -1.002  -9.644 -13.381 -14.158 -13.818  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1    38    71  -9.579  -0.003 -13.090 -11.258 -12.364          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]    110    133 U A - -
    MP   148   147 6   152     6     2     3    37    70  -6.602  -7.836  -0.034  -6.816 -18.523 -18.918 -14.159 -6.733 -14.120 -1.255 -8.702 -7.577 -0.468 -13.620 -6.784  0.261 -14.481 -11.468  3.710 -1.320 -7.915 -2.815 
    ML   149   147 6   152     6     1     1    36    69  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   150   147 6   152     6     1     1    38    70 -16.687  -0.834  -3.132 -15.394  -3.100  -2.264  1.670 -10.332 -11.305 -0.293 
     D   151   147 6   152     6     0     0    33    66 -16.139 -14.837 -10.634 -11.316 -11.334  -0.002 
    IL   152   152 5   152     6     1     1    36    69  -9.703  -9.965  -0.004 -11.621 -12.397 -12.057  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     2    38    70  -1.268  -0.774 -14.807 -12.975 -14.081          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]    112    130 C G - -
    MP   154   153 6   158     4     2     3    35    68  -7.042 -19.002  -0.011 -17.416                 -3.427 -13.629 -2.064 -0.659 -6.487 -14.751  3.559 -8.193 -1.855 -4.017 -14.288 -11.199  0.987 -14.104 -2.485 -0.449 
    ML   155   153 6   158     4     1     1    34    67 -10.681 -10.863  -0.004  -9.593                 -9.605 -8.524 -10.840  1.998 
    MR   156   153 6   158     4     1     1    29    62 -11.618 -10.647  -8.515  -0.005                 -6.327 -6.074 -5.756  1.983 
     D   157   153 6   158     4     0     0    33    66 -13.078 -12.759  -0.199  -2.958                 
    IL   158   158 5   158     4     1     1    34    67  -8.632  -9.315  -0.006 -11.801                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     1    35    68  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]    114      - A - - -
    ML   160   159 6   162     3     1     2    33    66 -19.737  -0.000 -18.391                          1.924 -3.009 -6.035 -3.913 
     D   161   159 6   162     3     0     0    28    61 -14.166  -3.598  -0.124                         
    IL   162   162 3   162     3     1     1    34    67  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]    115      - G - - -
    ML   163   162 3   165     3     1     1    32    65 -19.738  -0.059  -4.631                          0.186 -4.031  1.468 -4.864 
     D   164   162 3   165     3     0     0    22    54 -14.043  -8.101  -0.005                         
    IL   165   165 3   165     3     1     1    33    66  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]    116      - U - - -
    ML   166   165 3   168     3     1     1    32    64 -19.678  -0.610  -1.536                         -2.675 -0.121 -2.243  1.440 
     D   167   165 3   168     3     0     0    20    49 -16.762 -12.275  -0.000                         
    IL   168   168 3   168     3     1     1    33    66  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]    117      - U - - -
    ML   169   168 3   171     3     1     1    31    64  -2.706  -0.240 -17.722                         -0.596 -0.700 -3.160  1.385 
     D   170   168 3   171     3     0     0    20    42 -19.755  -0.163  -3.226                         
    IL   171   171 3   171     3     1     1    34    66  -0.817  -1.210 -14.966                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]    122      - G - - -
    ML   172   171 3   174     3     1     1    20    40 -19.689  -0.000 -18.343                         -5.779 -15.967  1.963 -3.584 
     D   173   171 3   174     3     0     0    19    39 -16.529  -0.856  -1.160                         
    IL   174   174 3   174     3     1     1    22    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]    123      - G - - -
    ML   175   174 3   177     3     1     1    19    39 -19.722  -0.000 -18.376                         -5.968 -16.016  1.991 -6.671 
     D   176   174 3   177     3     0     0    10    31 -15.370 -10.883  -0.001                         
    IL   177   177 3   177     3     1     1    21    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]    124      - U - - -
    ML   178   177 3   180     3     1     1    18    38  -2.637  -0.253 -18.376                         -2.672 -0.866 -5.496  1.710 
     D   179   177 3   180     3     0     0     7    28 -15.370  -0.426  -1.968                         
    IL   180   180 3   180     3     1     1    19    39  -1.317  -0.740 -15.219                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]    129      - A - - -
    ML   181   180 3   183     2     1     1     1     1       *   0.000                                  1.897 -5.304 -2.926 -3.061 
     D   182   180 3   183     2     0     0     0     0       *   0.000                                 
    IL   183   183 3   183     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    30 ]      -      - - - - -
     E   184   183 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   31 ]      -      - - - - -
     S   185   134 1   186     3     0     1   150   327 -19.748  -0.089  -4.062                         
    IL   186   186 2   186     3     1     2   152   328  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]    137      - A - - -
    ML   187   186 2   189     5     1     2   150   327  -3.501  -0.133 -18.407 -18.619 -19.511          1.141 -2.645  0.570 -2.735 
     D   188   186 2   189     5     0     1   145   322 -15.062  -1.631  -2.154  -1.145 -12.611         
    IL   189   189 3   189     5     1     2   155   332  -0.339  -2.255 -15.829 -17.661 -16.935          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]    147    183 c g - -
    MP   190   189 3   194     6     2     3   149   325  -6.620 -19.488  -0.016 -10.757 -18.545 -18.940 -8.263 -6.434 -2.067  1.724 -2.187 -4.019  2.573 -4.416  1.088 -0.138 -7.147 -2.749  1.507 -8.384 -3.137 -6.067 
    ML   191   189 3   194     6     1     2   126   303 -14.275 -14.621  -9.335  -0.003 -14.471 -12.000 -10.528 -9.318 -11.891  1.999 
    MR   192   189 3   194     6     1     2   147   324 -15.816 -14.545 -10.454 -14.523  -0.001 -12.737  1.507 -9.451  0.208 -9.367 
     D   193   189 3   194     6     0     0   132   309  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   194   194 5   194     6     1     2   148   324  -9.706  -9.969  -0.004 -11.624 -12.400 -12.061  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1   147   324  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    149    182 C G - -
    MP   196   195 6   200     6     2     2   147   323 -19.548 -19.488  -0.062 -18.264  -7.886  -4.728 -13.844 -10.769 -13.844  1.090 -2.158 -0.441  3.145 -5.134 -13.702 -1.530 -14.216 -2.779  1.528 -10.277 -0.784 -3.677 
    ML   197   195 6   200     6     1     2   125   302 -14.333 -14.679  -4.620  -0.060 -14.529 -12.058 -8.155 -9.928  1.998 -8.915 
    MR   198   195 6   200     6     1     2   146   323 -15.816 -14.545  -0.002 -14.523  -9.657 -12.737 -8.875  1.860 -1.455 -8.350 
     D   199   195 6   200     6     0     0   123   300  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   200   200 5   200     6     1     1   145   322  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1   145   322  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    150    181 U A - -
    MP   202   201 6   206     6     2     2   145   322  -7.408 -19.469  -0.147  -3.462 -18.525 -18.920 -5.357 -13.527 -13.826 -2.152 -12.692 -14.670  1.602 -2.707 -5.470  1.429 -14.198 -8.439  3.103 -5.874 -6.130  0.282 
    ML   203   201 6   206     6     1     1   120   297 -14.275 -14.621  -0.003  -9.030 -14.471 -12.000 -8.099 -9.872  1.998 -8.859 
    MR   204   201 6   206     6     1     1   118   295 -13.092 -11.821  -0.014 -11.800  -6.933 -10.013  1.994 -7.978 -7.251 -7.388 
     D   205   201 6   206     6     0     0    74   251 -18.845 -17.543 -13.340 -14.022  -0.002 -10.115 
    IL   206   206 5   206     6     1     1   119   296  -8.906  -9.169  -0.007 -10.824 -11.600 -11.261  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1   132   309  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    152    180 G C - -
    MP   208   207 6   212     6     2     2   117   294  -7.422  -6.693  -0.079  -5.241 -18.417  -6.444 -14.918 -5.917 -14.842 -1.685 -15.331 -15.639  2.856 -15.067 -14.835  3.037 -15.229 -3.666 -3.173 -15.011 -5.053 -13.670 
    ML   209   207 6   212     6     1     1   165   342  -0.001 -17.290 -12.004 -11.699 -17.140 -14.669  2.000 -12.146 -11.393 -11.479 
    MR   210   207 6   212     6     1     1    57   234 -16.233 -14.962 -10.871 -14.940  -0.532  -1.700 -11.273  1.999 -12.003 -9.842 
     D   211   207 6   212     6     0     0   104   281  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   212   212 5   212     6     1     1   164   341  -0.150 -16.520  -3.339 -18.175 -18.951 -18.612  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     5     1     1    23    41  -8.623  -0.006 -12.134 -10.302 -11.408          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    165    178 A U - -
    MP   214   213 6   218     4     2     2    22    40 -18.735  -5.876  -0.025 -17.356                 -14.244 -0.630 -1.685  3.113 -5.596 -0.625  2.176 -8.280 -14.071 -1.597 -14.547 -11.568 -0.237 -14.403 -9.585 -5.599 
    ML   215   213 6   218     4     1     1    22    40  -0.005 -12.326  -8.892  -9.495                  1.999 -10.316 -9.552 -9.655 
    MR   216   213 6   218     4     1     1    21    39 -13.728 -12.757  -0.002  -9.685                 -8.970 -10.739  1.999 -9.727 
     D   217   213 6   218     4     0     0    16    33 -13.499 -13.180 -11.196  -0.001                 
    IL   218   218 5   218     4     1     1    21    39 -10.281 -10.964  -0.002 -13.449                  0.000  0.000  0.000  0.000 
    IR   219   219 6   219     3     1     1    21    39  -8.472  -0.005 -11.172                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]    167      - u - - -
    ML   220   219 6   222     3     1     1    20    38 -19.717  -0.000 -18.371                         -1.096  0.278 -1.511  0.977 
     D   221   219 6   222     3     0     0    15    33 -15.613 -11.126  -0.001                         
    IL   222   222 3   222     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    168      - U - - -
    ML   223   222 3   225     3     1     1    19    37 -19.717  -0.000 -18.371                         -5.507 -1.816 -2.016  1.785 
     D   224   222 3   225     3     0     0    15    33 -15.613 -11.126  -0.001                         
    IL   225   225 3   225     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    169      - u - - -
    ML   226   225 3   228     3     1     1    18    36 -19.717  -0.059  -4.641                          0.149 -0.165 -0.288  0.239 
     D   227   225 3   228     3     0     0    15    33 -15.613 -11.126  -0.001                         
    IL   228   228 3   228     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    170      - a - - -
    ML   229   228 3   231     3     1     1    17    35  -4.589  -0.061 -18.312                          0.223 -0.191 -0.194  0.115 
     D   230   228 3   231     3     0     0    15    33 -17.120  -1.160  -0.856                         
    IL   231   231 3   231     3     1     1    17    34  -9.767  -0.489  -1.805                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    172      - c - - -
    ML   232   231 3   234     3     1     1    16    34 -19.682  -0.000 -18.336                         -0.467  0.168  0.135  0.077 
     D   233   231 3   234     3     0     0     8    26 -16.682 -12.195  -0.000                         
    IL   234   234 3   234     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    173      - A - - -
    ML   235   234 3   237     3     1     1    15    33  -4.346  -0.073 -18.336                          1.844 -14.369 -1.812 -3.008 
     D   236   234 3   237     3     0     0     6    24 -16.682  -2.000  -0.415                         
    IL   237   237 3   237     3     1     1    17    35  -1.502  -0.629 -13.360                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    176      - A - - -
    ML   238   237 3   240     2     1     1     1     1       *   0.000                                  1.731 -1.624 -2.478 -2.500 
     D   239   237 3   240     2     0     0     0     0       *   0.000                                 
    IL   240   240 3   240     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    45 ]      -      - - - - -
     E   241   240 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Thr
ACC   bact-Thr-r2-022416
LENG  76
MAXL  1199
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 21:04:28 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Thr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Thr-r2-022416.sto
NSEQ  13370
EFFN  20.652826
CKSUM 93420263
STATS LOCAL MSV       -8.5829  0.71898
STATS LOCAL VITERBI   -9.3496  0.71898
STATS LOCAL FORWARD   -3.3582  0.71898
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45732  1.38384  1.29458  1.41671
          1.38629  1.38629  1.38629  1.38629
          0.00969  5.33455  5.33455  1.46634  0.26236  0.00000        *
      1   4.22073  4.47966  0.03531  4.74762      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00969  5.33455  5.33455  1.46634  0.26236  1.09861  0.40547
      2   2.97007  0.48469  1.86758  1.72420      2 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.03032  5.34964  3.68446  1.46634  0.26236  1.09861  0.40547
      3   2.57768  0.59304  2.48683  1.24399      3 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.03773  5.33097  3.43621  1.46634  0.26236  0.46502  0.98919
      4   1.70900  2.23660  0.45484  2.55643      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.06943  2.78854  5.19198  0.15159  1.96142  0.44815  1.01836
      5   1.28837  1.96852  0.73466  2.25428      6 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.00980  5.36050  5.28795  1.46634  0.26236  0.99534  0.46139
      6   2.02666  1.10257  2.13332  0.87284      7 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.06836  2.86643  4.69144  1.03706  0.43772  0.88122  0.53491
      7   1.57428  2.82325  0.72387  1.39207     13 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.03229  4.65213  3.80614  0.79790  0.59834  0.79674  0.59929
      8   3.81431  3.41238  4.18296  0.07286     15 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.34264  1.25394  5.35451  4.33081  0.01324  0.33140  1.26555
      9   0.22142  3.43727  1.95114  3.71488    105 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.07269  5.38101  2.72562  1.46634  0.26236  1.09861  0.40547
     10   3.12516  3.26336  0.12353  3.38104    106 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02337  5.31817  4.00622  1.46634  0.26236  0.90191  0.52053
     11   2.95327  0.34844  2.55255  1.80692    107 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.02765  3.88842  4.99117  0.86074  0.54965  2.59209  0.07781
     12   2.66564  1.94674  2.13879  0.40061    110 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01907  4.26535  5.33019  0.58772  0.81101  0.60137  0.79420
     13   2.27998  0.55250  2.41701  1.45663    112 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01627  4.47055  5.36139  0.68398  0.70240  0.66805  0.71889
     14   0.09368  3.21442  4.02043  3.46407    114 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00931  5.37399  5.37399  1.46634  0.26236  1.39129  0.28602
     15   1.30734  3.45751  0.40868  3.39854    115 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.04657  5.37457  3.19741  1.46634  0.26236  1.47712  0.25915
     16   2.62594  1.51008  2.75191  0.44172    116 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.38286  5.33769  1.16063  1.46634  0.26236  2.50246  0.08543
     17   1.67193  1.78639  2.67728  0.55199    117 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.15515  1.98952  4.96883  0.86582  0.54595  0.13788  2.04952
     18   4.30918  5.54571  0.03929  3.85485    122 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34426  5.34426  1.46634  0.26236  0.70932  0.67724
     19   4.57647  6.03546  0.01899  5.09482    123 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00940  5.36474  5.36474  1.46634  0.26236  1.87273  0.16688
     20   2.91640  2.02485  3.95273  0.22985    124 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.16672  1.90460  5.36474  0.54319  0.86963  0.58830  0.81029
     21   0.11423  3.76893  3.14581  3.17385    129 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.03102  5.37689  3.65254  1.46634  0.26236  0.78864  0.60599
     22   1.67313  2.70287  0.49313  2.00534    130 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.03959  3.37813  5.35898  0.66315  0.72408  0.50719  0.92177
     23   0.47364  2.09248  1.82900  2.37180    133 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.02452  3.93230  5.37604  0.41957  1.07099  1.40518  0.28147
     24   2.16232  2.52662  0.32675  2.47989    135 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00931  5.37604  5.37300  1.46634  0.26236  0.67461  0.71203
     25   3.26760  0.19945  3.06385  2.34323    136 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.06511  5.38099  2.83996  1.46634  0.26236  1.09658  0.40648
     26   0.66029  2.78430  1.05962  2.59112    137 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.09278  2.48000  5.32568  1.56064  0.23572  0.68568  0.70067
     27   1.50497  1.13532  1.55765  1.40231    147 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01860  4.28985  5.35635  0.58687  0.81208  2.11521  0.12852
     28   1.90066  0.70650  2.29900  1.35945    149 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.04763  5.35635  3.17495  1.46634  0.26236  0.27604  1.42206
     29   2.64430  1.42155  1.69215  0.68621    150 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01486  4.60787  5.34416  0.78148  0.61199  1.80212  0.18026
     30   2.06095  1.07054  0.77378  2.67983    152 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.10922  2.41531  4.25952  2.29577  0.10612  2.30932  0.10461
     31   0.85508  1.25259  2.13876  1.76500    165 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.03189  3.62811  5.33436  0.32914  1.27133  0.71476  0.67199
     32   1.83435  1.25782  2.22858  0.80223    167 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00943  5.36171  5.36171  1.46634  0.26236  1.96731  0.15063
     33   3.57115  2.54598  2.81378  0.18212    168 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00943  5.36171  5.36171  1.46634  0.26236  1.96731  0.15063
     34   1.25234  1.54009  1.61423  1.20145    169 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.04638  5.36171  3.20325  1.46634  0.26236  1.96731  0.15063
     35   1.21682  1.55544  1.56711  1.25848    170 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.03687  3.46308  5.32512  0.28615  1.39089  0.85720  0.55225
     36   1.52416  1.36330  1.39513  1.27805    172 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.02007  5.35051  4.19122  1.46634  0.26236  2.25392  0.11092
     37   0.14391  4.10919  2.56637  3.19905    173 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.05508  3.02022  5.34008  0.54052  0.87334  1.30451  0.31650
     38   0.23539  2.43205  2.87091  2.72981    176 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.05764  3.94103  3.30809  0.43274  1.04620  0.53915  0.87526
     39   1.93781  1.94298  1.17051  0.91007    178 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.10312  4.36281  2.46231  0.63441  0.75555  0.18777  1.76496
     40   2.87362  0.74736  0.99596  2.29734    180 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.06012  5.30064  2.93064  1.46634  0.26236  0.10661  2.29138
     41   0.83292  1.77503  1.35843  1.97558    181 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.01021  5.33534  5.23307  1.46634  0.26236  0.45354  1.00889
     42   1.53081  2.18983  0.69919  1.74460    182 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00937  5.36833  5.36833  1.46634  0.26236  1.64474  0.21451
     43   1.23801  2.09465  1.05270  1.43578    183 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00936  5.36883  5.36883  1.46634  0.26236  0.43890  1.03492
     44   0.39353  2.48425  2.31550  1.94335    184 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.11790  5.38101  2.23859  1.46634  0.26236  1.09861  0.40547
     45   3.02661  3.34205  0.15245  2.85498    185 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.16088  1.94155  5.27342  2.27392  0.10860  0.19998  1.70784
     46   2.16999  3.46250  0.25502  2.53111    207 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.05148  5.36915  3.08967  1.46634  0.26236  1.71566  0.19826
     47   2.08643  2.63494  3.52845  0.25515    208 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04947  5.32744  3.13700  1.46634  0.26236  0.31909  1.29759
     48   2.15780  0.41421  3.46167  1.64933    209 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00995  5.33459  5.28196  1.46634  0.26236  2.55369  0.08099
     49   1.44874  2.25248  0.51544  2.76847    210 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00969  5.33433  5.33433  1.46634  0.26236  1.48670  0.25634
     50   2.04932  0.91910  1.37989  1.51096    211 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     51   1.63250  1.33718  0.85017  2.16601    212 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     52   1.21912  2.92000  0.51846  2.89787    213 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     53   4.08623  5.28584  0.03592  4.31156    214 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     54   3.99889  4.01851  4.77871  0.04575    215 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     55   4.01106  3.57007  4.34681  0.06104    216 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     56   4.29255  0.04157  4.56394  4.09696    217 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     57   1.01461  4.08061  0.51536  3.76050    218 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     58   0.03365  4.70996  4.36123  4.48058    219 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     59   1.48838  1.75156  1.44454  1.00812    220 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     60   3.59715  2.50093  4.20518  0.13276    221 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     61   4.76137  0.03858  5.09525  3.76519    222 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00960  5.34354  5.34354  1.46634  0.26236  2.39695  0.09540
     62   3.09591  0.50601  2.76634  1.24141    223 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01552  4.87421  4.85902  0.98139  0.46967  0.20909  1.66770
     63   2.53537  1.07384  1.29065  1.19078    225 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01599  4.48804  5.37779  0.68463  0.70174  1.30750  0.31539
     64   1.69112  1.76792  0.86775  1.49118    227 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01430  4.64783  5.37779  0.78574  0.60841  1.30750  0.31539
     65   3.02900  0.82277  2.19071  0.91482    229 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01312  5.37712  4.77769  1.46634  0.26236  0.77868  0.61435
     66   1.54337  0.86325  2.37470  1.30375    230 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00931  5.37431  5.37431  1.46634  0.26236  1.34053  0.30341
     67   1.17503  2.26366  0.92417  1.65885    231 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01246  5.37431  4.86075  1.46634  0.26236  1.34053  0.30341
     68   2.70867  0.88493  1.73346  1.06723    232 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.04592  5.37120  3.21305  1.46634  0.26236  1.50237  0.25180
     69   2.98576  0.53493  2.05460  1.44544    233 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01000  5.33496  5.27329  1.46634  0.26236  0.60236  0.79301
     70   1.42877  2.56990  0.51218  2.46904    234 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.02778  3.78518  5.36154  0.37206  1.16896  1.81934  0.17690
     71   1.97178  2.09754  0.40790  2.61745    236 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.00943  5.36184  5.36184  1.46634  0.26236  0.36797  1.17811
     72   4.33802  0.05685  4.25670  3.57451    237 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03190  3.62010  5.37811  0.95492  0.48588  1.09861  0.40547
     73   0.62018  2.25886  2.73990  1.22722    242 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.20101  5.05521  1.73889  1.46634  0.26236  1.09861  0.40547
     74   4.88991  0.02726  5.25020  4.26009    243 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01547  4.86967  4.86967  1.46634  0.26236  3.38638  0.03442
     75   4.88991  0.02726  5.25020  4.26009    244 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.01547  4.86967  4.86967  1.46634  0.26236  3.38638  0.03442
     76   0.02031  5.22518  4.82848  5.00139    245 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.00777  4.86197        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Trp
ACC      bact-Trp-r2-022416
STATES   230
NODES    61
CLEN     72
W        1191
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 21:16:41 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Trp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Trp-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Trp-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     4502
EFFN     4502.000000
CKSUM    2586054545
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -13.1293 0.71930
ECMLC    0.59130    -8.29917     2.06425     1600000      550190  0.002181
ECMGC    0.32915   -43.13655   -30.23747     1600000       27924  0.014325
ECMLI    0.57826    -8.00404     2.46673     1600000      511404  0.002346
ECMGI    0.35535   -39.26497   -27.47812     1600000       26369  0.015169
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1191  2545 -17.063 -18.308  -0.000 -14.762                 
    IL     1     1 2     1     4    20    43  1195  2549  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    21    44  1195  2549  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    223 - G - -
    MR     3     2 3     5     5    27    49  1194  2548  -6.908  -0.090 -16.926  -4.264 -18.030          0.074 -3.376  1.473 -3.738 
     D     4     2 3     5     5    17    40  1191  2545  -5.352  -0.707  -2.978  -4.409  -2.404         
    IR     5     5 3     5     5    24    45  1194  2548  -7.064  -0.017 -10.575  -8.742  -9.848          0.000  0.000  0.000  0.000 
                                             [ MATP    2 ]      1    221 A U - -
    MP     6     5 3    10     6    28    49  1193  2547 -17.963 -17.902  -0.000 -16.679 -16.959 -17.354 -3.957 -4.705 -11.815  3.004 -12.953 -12.423 -2.997 -12.496 -12.240  2.744 -12.493 -0.138 -3.263 -11.679 -4.856 -10.776 
    ML     7     5 3    10     6    19    42  1190  2544  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR     8     5 3    10     6    24    45  1190  2544 -15.190 -13.919  -4.781 -13.897  -0.054 -12.110 -11.000 -9.738 -12.422  1.999 
     D     9     5 3    10     6    15    37  1184  2539  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    10    10 5    10     6    19    43  1192  2546  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    11    11 6    11     5    20    43  1192  2546  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    3 ]      2    220 g c - -
    MP    12    11 6    16     6    26    47  1191  2545 -17.966 -17.905  -0.029  -5.651 -16.961 -17.357 -12.091 -10.959 -11.957 -1.069 -12.093 -12.613  2.740 -12.238 -12.219  2.991 -5.006 -1.810 -0.982 -11.894 -4.781 -5.005 
    ML    13    11 6    16     6    19    42  1188  2542  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    14    11 6    16     6    23    45  1189  2543 -15.138 -13.867  -7.577 -13.845  -0.008 -12.059 -8.690 -2.520 -9.495  1.934 
     D    15    11 6    16     6    15    37  1183  2537  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    16    16 5    16     6    19    43  1190  2544  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    17    17 6    17     5    20    43  1190  2544  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    4 ]      3    219 G C - -
    MP    18    17 6    22     6    25    46  1189  2543 -17.937 -17.877  -0.000 -16.653 -16.933 -17.328 -13.958 -12.472 -14.129  0.237 -15.953 -15.518 -4.365 -14.264 -13.659  3.855 -14.221 -2.783 -3.263 -14.731 -13.151 -4.158 
    ML    19    17 6    22     6    21    42  1186  2540 -13.201 -13.548  -8.262  -0.006 -13.397 -10.927 -8.104  1.995 -8.603 -7.068 
    MR    20    17 6    22     6    22    44  1188  2542 -15.132 -13.861  -0.072 -13.839  -4.377 -12.053 -8.877  1.968 -9.267 -3.555 
     D    21    17 6    22     6    15    36  1182  2536  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    22    22 5    22     6    19    42  1188  2542  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    23    23 6    23     5    19    42  1188  2542  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      4    218 G C - -
    MP    24    23 6    28     6    23    44  1187  2541 -18.009 -17.948  -0.000 -16.725 -17.005 -17.400 -12.254 -10.909 -12.080  2.561 -13.061 -12.700 -0.083 -12.695 -12.469  3.022 -12.734 -5.182 -0.540 -11.970 -1.673 -11.029 
    ML    25    23 6    28     6    20    41  1185  2539 -13.201 -13.548  -8.262  -0.006 -13.397 -10.927 -7.078 -8.850  1.995 -7.840 
    MR    26    23 6    28     6    19    40  1183  2538 -10.800  -9.529  -5.438  -9.507  -0.046  -7.721 -4.919  1.957 -5.457 -4.005 
     D    27    23 6    28     6    15    36  1181  2535  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    28    28 5    28     6    19    41  1186  2540  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    29    29 6    29     5    19    41  1186  2540  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      5    217 G C - -
    MP    30    29 6    34     6    21    42  1185  2539 -18.009 -17.948  -0.000 -16.725 -17.005 -17.400 -6.878 -4.624 -8.802  0.165 -12.921 -4.219  1.695 -12.482 -12.230  3.458 -8.636 -2.693 -2.992 -11.646 -1.936 -10.757 
    ML    31    29 6    34     6    19    40  1184  2538 -13.201 -13.548  -8.262  -0.006 -13.397 -10.927 -7.078 -8.850  1.995 -7.840 
    MR    32    29 6    34     6    18    39  1182  2537 -10.800  -9.529  -5.438  -9.507  -0.046  -7.721 -1.007  1.702 -3.998 -2.421 
     D    33    29 6    34     6    15    36  1180  2534  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    34    34 5    34     6    18    40  1184  2539  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    35    35 6    35     5    19    40  1184  2538  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      6    216 c g - -
    MP    36    35 6    40     6    19    40  1183  2537  -5.681 -17.948  -0.037  -7.433 -17.005 -17.400 -12.721 -12.449 -12.672  1.068 -11.484 -13.438  2.854 -12.166 -12.550  0.695 -13.030 -10.040  0.915 -12.882  1.652 -5.302 
    ML    37    35 6    40     6    18    39  1183  2537 -13.201 -13.548  -8.262  -0.006 -13.397 -10.927 -7.078 -8.850  1.995 -7.840 
    MR    38    35 6    40     6    17    38  1181  2536 -10.800  -9.529  -2.586  -9.507  -0.277  -7.721  1.685 -3.735 -0.685 -3.522 
     D    39    35 6    40     6    15    35  1179  2533  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    40    40 5    40     6    18    39  1182  2536  -9.111  -9.374  -0.006 -11.029 -11.805 -11.465  0.000  0.000  0.000  0.000 
    IR    41    41 6    41     5    18    39  1182  2536  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      8    215 G C - -
    MP    42    41 6    46     4    17    38  1181  2535  -6.141 -17.437  -0.034  -6.763                 -13.030 -11.609 -12.899  1.421 -13.644 -13.387 -1.476 -13.365 -13.049  3.485 -13.343 -7.451  0.780 -12.796 -4.597 -11.816 
    ML    43    41 6    46     4    17    38  1182  2536 -10.663  -0.389  -2.093  -9.575                  1.621 -6.629 -7.137 -0.139 
    MR    44    41 6    46     4    16    37  1180  2534  -8.587  -7.616  -0.075  -4.544                 -4.669  1.948 -5.244 -3.745 
     D    45    41 6    46     4    14    35  1179  2533  -4.568  -4.250  -2.265  -0.520                 
    IL    46    46 5    46     4    17    37  1181  2535  -1.004  -9.648  -1.001 -12.134                  0.000  0.000  0.000  0.000 
    IR    47    47 6    47     3    17    37  1181  2535  -1.004  -0.998 -10.861                          0.000  0.000  0.000  0.000 
                                             [ MATL    9 ]     11      - U - - -
    ML    48    47 6    50     3    15    36  1179  2533 -18.165  -0.000 -16.819                         -11.950 -5.446 -6.223  1.987 
     D    49    47 6    50     3    14    35  1178  2532 -12.807  -0.010  -7.198                         
    IL    50    50 3    50     3    15    36  1180  2534  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   10 ]     12      - A - - -
    ML    51    50 3    53     2    14    35  1178  2532 -18.834  -0.000                                  1.745 -1.656 -1.597 -12.281 
     D    52    50 3    53     2    13    34  1177  2531  -8.445  -0.004                                 
    IL    53    53 3    53     2    14    35  1179  2533  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    11 ]      -      - - - - -
     B    54    53 3   124    55    13    34  1177  2531                                                 
                                             [ BEGR   42 ]      -      - - - - -
     S    55    54 1    56     3     0     3  1144  2498 -18.178  -0.000 -16.832                         
    IL    56    56 2    56     3     1     4  1147  2501  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     59      - a - - -
    ML    57    56 2    59     3     1     3  1144  2498 -18.178  -0.277  -2.515                          0.537 -0.968  0.420 -0.514 
     D    58    56 2    59     3     0     1  1159  2513  -6.174  -1.687  -0.566                         
    IL    59    59 3    59     3     1     3  1142  2496  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     60      - G - - -
    ML    60    59 3    62     3     1     2  1137  2491  -1.387  -0.695 -16.555                          0.358 -2.690  1.010 -0.866 
     D    61    59 3    62     3     0     1  1167  2521  -0.770  -1.392  -4.949                         
    IL    62    62 3    62     3     1     7  1206  2560  -0.020  -6.210 -20.523                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    188      - G - - -
    ML    63    62 3    65     3     1     1    54    96  -1.400  -1.120  -2.635                         -3.715 -2.051  1.630 -0.770 
     D    64    62 3    65     3     0     0    37    78 -12.140  -7.653  -0.008                         
    IL    65    65 3    65     3     1     4    56    97  -0.644  -1.474 -15.638                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]    193      - A - - -
    ML    66    65 3    68     3     1     2    26    44 -17.917  -0.000 -16.571                          1.063 -2.992 -3.317  0.753 
     D    67    65 3    68     3     0     0    25    43 -17.004  -0.001 -11.396                         
    IL    68    68 3    68     3     1     1    35    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]    194      - U - - -
    ML    69    68 3    71     5     1     1    25    43 -17.111  -0.000 -16.926 -17.139 -18.030         -4.562 -0.753 -3.638  1.715 
     D    70    68 3    71     5     0     0    25    43  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL    71    71 3    71     5     1     1    27    44  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   48 ]    195    212 G C - -
    MP    72    71 3    76     6     2     2    24    42 -18.040  -7.173  -0.010 -16.756 -17.036 -17.431 -12.184 -10.804 -12.013  0.584 -13.131 -12.581 -0.444 -12.686 -12.404  3.655 -12.657 -0.310 -1.731 -11.862 -4.046 -10.973 
    ML    73    71 3    76     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    74    71 3    76     6     1     1    25    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    75    71 3    76     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    76    76 5    76     6     1     1    25    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    77    77 6    77     5     1     1    23    41  -6.812  -0.020 -10.323  -8.491  -9.597          0.000  0.000  0.000  0.000 
                                             [ MATP   49 ]    196    210 C G - -
    MP    78    77 6    82     6     2     2    22    40 -18.040 -17.979  -0.000 -16.756 -17.036 -17.431 -12.333 -12.035 -12.334  0.393 -4.882 -5.416  3.018 -3.658 -12.192 -1.307 -12.706  1.665  1.229 -5.259 -1.782 -2.243 
    ML    79    77 6    82     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    80    77 6    82     6     1     1    25    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    81    77 6    82     6     0     0    23    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    82    82 5    82     6     1     1    24    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    83    83 6    83     5     1     1    24    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   50 ]    197    209 a u - -
    MP    84    83 6    88     6     2     2    20    38 -18.040 -17.979  -0.000 -16.756 -17.036 -17.431 -12.021 -5.058 -11.840  2.804 -4.036 -12.439 -0.050 -12.528 -12.275  2.264 -12.523  1.378 -0.868 -11.697 -10.046 -6.903 
    ML    85    83 6    88     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    86    83 6    88     6     1     1    24    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    87    83 6    88     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    88    88 5    88     6     1     1    23    42  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    89    89 6    89     5     1     1    23    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   51 ]    198    208 G C - -
    MP    90    89 6    94     6     2     2    18    36 -18.040 -17.979  -0.000 -16.756 -17.036 -17.431 -15.727 -8.439 -17.262  0.329 -17.445 -13.855 -4.029 -17.002 -13.957  3.871 -14.180 -10.491 -12.218 -14.289 -4.389 -16.066 
    ML    91    89 6    94     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    92    89 6    94     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    93    89 6    94     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    94    94 5    94     6     1     1    23    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    95    95 6    95     5     1     1    22    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    199    207 G C - -
    MP    96    95 6   100     4     2     2    15    34 -17.269 -17.476  -0.000 -15.890                 -15.998 -12.596 -18.456 -10.083 -17.617 -13.750 -11.899 -17.853 -13.966  3.992 -14.156 -3.455 -12.267 -14.221 -14.355 -17.621 
    ML    97    95 6   100     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    98    95 6   100     4     1     1    23    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    99    95 6   100     4     0     0    22    40  -4.568  -4.250  -2.265  -0.520                 
    IL   100   100 5   100     4     1     1    25    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   101   101 6   101     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   53 ]    200      - U - - -
    ML   102   101 6   104     3     1     1    13    31 -18.178  -0.000 -16.832                         -5.488 -11.329 -6.489  1.988 
     D   103   101 6   104     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   104   104 3   104     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   54 ]    201      - U - - -
    ML   105   104 3   107     3     1     1    12    30 -18.178  -0.000 -16.832                         -15.489 -14.094 -17.086  2.000 
     D   106   104 3   107     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   107   107 3   107     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]    202      - C - - -
    ML   108   107 3   110     3     1     1    10    29 -18.178  -0.000 -16.832                         -5.286  1.972 -6.990 -4.522 
     D   109   107 3   110     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   110   110 3   110     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    203      - G - - -
    ML   111   110 3   113     3     1     1     9    28 -18.178  -0.000 -16.832                         -0.798 -6.969  1.769 -6.950 
     D   112   110 3   113     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   113   113 3   113     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    204      - A - - -
    ML   114   113 3   116     3     1     1     8    26 -18.178  -0.000 -16.832                          1.992 -7.002 -6.997 -6.996 
     D   115   113 3   116     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   116   116 3   116     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    205      - c - - -
    ML   117   116 3   119     3     1     1     6    24 -18.178  -0.000 -16.832                         -0.307  0.467 -0.035 -0.263 
     D   118   116 3   119     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   119   119 3   119     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    206      - U - - -
    ML   120   119 3   122     2     1     1     1     1       *   0.000                                 -4.572 -2.560 -4.778  1.908 
     D   121   119 3   122     2     0     0     0     0       *   0.000                                 
    IL   122   122 3   122     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    60 ]      -      - - - - -
     E   123   122 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   12 ]      -      - - - - -
     S   124    54 1   125     1     2    13    44    61   0.000                                         
                                             [ BIF    13 ]      -      - - - - -
     B   125   124 1   126   173     2    13    44    61                                                 
                                             [ BEGL   14 ]      -      - - - - -
     S   126   125 1   127     4     0     4    24    41  -0.007 -16.170  -7.713 -16.217                 
                                             [ MATP   15 ]     13     35 G C - -
    MP   127   126 1   131     6     2     6    24    41 -18.033 -17.973  -0.005  -8.243 -17.029 -17.424 -12.435 -11.073 -12.289 -0.974 -5.120 -12.983 -4.414 -12.911 -3.679  3.641 -12.925  1.375 -2.161 -12.219 -10.560 -4.477 
    ML   128   126 1   131     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   129   126 1   131     6     1     1    24    41 -11.783 -10.512  -0.036 -10.490  -5.624  -8.704  0.932 -4.932  1.015 -4.670 
     D   130   126 1   131     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   131   131 5   131     6     1     1    26    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   132   132 6   132     5     1     1    25    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   16 ]     14     34 u a - -
    MP   133   132 6   137     6     2     6    22    39  -6.575 -17.975  -0.015 -16.751 -17.031 -17.426 -15.092 -15.374 -5.078 -11.610 -12.761 -14.554  2.658 -13.676 -14.514 -1.640 -14.634 -13.777  3.000 -14.926  0.418 -13.315 
    ML   134   132 6   137     6     1     1    22    40 -10.728 -11.074  -0.039  -5.483 -10.924  -8.454 -4.818 -6.440  1.975 -5.555 
    MR   135   132 6   137     6     1     1    25    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   136   132 6   137     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   137   137 5   137     6     1     1    22    39  -8.256  -8.518  -0.012 -10.174 -10.950 -10.610  0.000  0.000  0.000  0.000 
    IR   138   138 6   138     5     1     1    24    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   17 ]     16     33 U A - -
    MP   139   138 6   143     6     2     4    20    37  -4.903 -17.979  -0.049 -16.756 -14.048 -17.431 -12.430 -5.041 -12.418 -0.950 -6.203 -1.920 -0.566 -11.944 -9.537  1.027 -12.791 -4.221  3.632 -12.601 -7.091 -11.006 
    ML   140   138 6   143     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   141   138 6   143     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   142   138 6   143     6     0     0    23    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   143   143 5   143     6     1     1    19    37  -9.913 -10.176  -0.004 -11.831 -12.607 -12.267  0.000  0.000  0.000  0.000 
    IR   144   144 6   144     5     1     1    23    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   18 ]     18     32 C G - -
    MP   145   144 6   149     4     2     2    18    35 -17.269 -17.476  -0.004  -8.494                 -15.077 -15.347 -4.274 -2.761 -0.136 -14.553  3.477 -3.625 -4.092 -11.536 -14.629 -13.723  0.403 -14.916  1.087 -2.587 
    ML   146   144 6   149     4     1     1    24    43  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   147   144 6   149     4     1     1    24    42  -5.227  -4.256  -2.123  -0.532                  0.071 -0.811  0.632 -0.269 
     D   148   144 6   149     4     0     0    23    41  -4.568  -4.250  -2.265  -0.520                 
    IL   149   149 5   149     4     1     1    26    44  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   150   150 6   150     3     1     1    25    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   19 ]     19      - A - - -
    ML   151   150 6   153     3     1     2    16    32 -18.174  -0.000 -16.828                          1.958 -4.601 -5.615 -4.265 
     D   152   150 6   153     3     0     0    16    35 -11.166  -5.180  -0.041                         
    IL   153   153 3   153     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   20 ]     20      - A - - -
    ML   154   153 3   156     3     1     1    15    31 -18.174  -0.024  -5.952                          1.743 -4.875 -0.748 -5.394 
     D   155   153 3   156     3     0     0    15    33 -11.141  -6.654  -0.015                         
    IL   156   156 3   156     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   21 ]     21      - c - - -
    ML   157   156 3   159     3     1     1    14    29  -1.545  -0.606 -16.805                         -0.709  0.891 -5.068  0.589 
     D   158   156 3   159     3     0     0    12    29 -13.875  -0.005  -8.267                         
    IL   159   159 3   159     3     1     1    14    29  -2.925  -0.204 -14.204                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     25      - G - - -
    ML   160   159 3   162     3     1     1    12    27 -18.178  -0.000 -16.832                         -6.028 -14.468  1.988 -5.811 
     D   161   159 3   162     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   162   162 3   162     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     26      - G - - -
    ML   163   162 3   165     3     1     1    11    26 -18.178  -0.000 -16.832                         -6.126 -14.476  1.995 -13.449 
     D   164   162 3   165     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   165   165 3   165     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     27      - U - - -
    ML   166   165 3   168     3     1     1    10    19  -2.633  -0.254 -16.832                         -4.145 -0.300 -5.544  1.637 
     D   167   165 3   168     3     0     0     7    17  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    10    19  -2.875  -0.212 -13.152                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     31      - A - - -
    ML   169   168 3   171     2     1     1     1     1       *   0.000                                  1.824 -6.945 -1.202 -5.873 
     D   170   168 3   171     2     0     0     0     0       *   0.000                                 
    IL   171   171 3   171     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    26 ]      -      - - - - -
     E   172   171 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   27 ]      -      - - - - -
     S   173   125 1   174     3     0     2    26    44 -18.178  -0.000 -16.832                         
    IL   174   174 2   174     3     1     1    35    54  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     36      - A - - -
    ML   175   174 2   177     5     1     2    26    44 -17.111  -0.021 -16.926  -6.096 -18.030          1.271 -3.346  0.377 -2.394 
     D   176   174 2   177     5     0     0    26    43  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   177   177 3   177     5     1     1    28    44  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   29 ]     37     58 u a - -
    MP   178   177 3   182     6     2     7    25    43 -18.019 -17.958  -0.379  -2.113 -17.014 -17.410 -5.677 -2.533 -9.377  1.762 -2.937 -7.172  1.667 -3.654 -1.747  1.240 -8.897  1.324  1.851 -3.601 -3.136 -4.213 
    ML   179   177 3   182     6     1     1    26    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   180   177 3   182     6     1     1    23    40 -13.370 -12.099  -8.008 -12.077  -7.211  -0.016 -6.787  0.895  1.084 -6.507 
     D   181   177 3   182     6     0     0    24    40  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   182   182 5   182     6     1     1    27    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   183   183 6   183     5     1     1    26    43  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   30 ]     38     57 C G - -
    MP   184   183 6   188     6     2     6    23    41 -17.640 -17.579  -0.000 -16.355 -16.635 -17.030 -11.998 -11.702 -11.991  1.253 -4.667 -12.825  3.351 -11.507 -11.852 -2.994 -12.361 -2.441  0.457 -12.178  0.752 -7.389 
    ML   185   183 6   188     6     1     4    21    40 -16.783 -17.129  -7.827  -0.006 -16.979 -14.508 -12.425 -11.939  1.138  0.847 
    MR   186   183 6   188     6     1     1    24    40  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   187   183 6   188     6     0     0    21    39 -15.977 -14.676  -1.089 -11.155 -11.172  -0.919 
    IL   188   188 5   188     6     1     1    25    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   189   189 6   189     5     1     1    24    41  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   31 ]     39     56 G C - -
    MP   190   189 6   194     6     2     4    21    39  -6.744 -17.594  -0.118 -16.370  -3.858 -17.045 -2.790 -4.484 -11.526  1.029 -12.663 -12.122  0.288 -12.208 -11.944  3.587 -12.197 -1.655 -2.226 -11.384 -9.737 -10.487 
    ML   191   189 6   194     6     1     4    20    39 -16.777 -17.123 -11.837  -0.000 -16.973 -14.502 -13.326 -11.946 -14.901  2.000 
    MR   192   189 6   194     6     1     1    21    38  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   193   189 6   194     6     0     0    18    37 -15.063 -13.761  -9.558 -10.240 -10.258  -0.004 
    IL   194   194 5   194     6     1     1    21    38  -7.718  -7.981  -0.017  -9.636 -10.412 -10.072  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1    23    39  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   32 ]     41     55 G C - -
    MP   196   195 6   200     6     2     4    19    37  -2.458 -17.491  -0.290 -16.267 -16.547 -16.942 -14.668 -6.849 -15.358 -1.826 -16.141 -13.317 -0.805 -15.593 -5.303  3.877 -13.592 -1.939 -2.684 -13.583 -13.080 -14.232 
    ML   197   195 6   200     6     1     3    19    38  -0.001 -17.123 -11.837 -11.531 -16.973 -14.502 -12.629  2.000 -13.503 -11.019 
    MR   198   195 6   200     6     1     2    18    37 -15.211 -13.940  -9.849 -13.918  -0.002 -12.132 -11.026 -9.762 -12.452  1.999 
     D   199   195 6   200     6     0     0    18    37 -15.063 -13.761  -9.558 -10.240 -10.258  -0.004 
    IL   200   200 5   200     6     1     2    18    37 -13.320  -1.100  -1.057  -4.238 -16.014 -15.675  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     5    17    35  -3.682  -0.117 -14.959 -13.126 -14.232          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     43     52 U A - -
    MP   202   201 6   206     4     2     4    16    34 -17.149 -17.356  -0.000 -15.771                 -13.698 -3.677 -13.453  1.603 -12.087 -0.075 -0.982 -5.900 -6.885 -3.897 -13.761 -11.257  3.487 -13.770 -3.134 -7.543 
    ML   203   201 6   206     4     1     1    19    38 -10.289 -10.471  -7.038  -0.013                  1.996 -8.583 -7.833 -7.957 
    MR   204   201 6   206     4     1     1    17    36 -13.237 -12.266 -10.133  -0.002                 -8.488 -10.260  1.998 -9.247 
     D   205   201 6   206     4     0     0    18    37 -10.486 -10.168  -8.183  -0.007                 
    IL   206   206 5   206     4     1     1    25    44  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   34 ]     44      - C - - -
    ML   208   207 6   210     3     1     2    13    31 -18.059  -0.000 -16.713                         -6.829  1.768 -6.718 -0.797 
     D   209   207 6   210     3     0     0    12    31 -15.945 -11.458  -0.001                         
    IL   210   210 3   210     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   35 ]     45      - U - - -
    ML   211   210 3   213     3     1     1    12    30 -18.059  -0.000 -16.713                         -6.035 -11.227 -5.963  1.989 
     D   212   210 3   213     3     0     0    11    30 -15.945  -0.001 -10.336                         
    IL   213   213 3   213     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   36 ]     46      - c - - -
    ML   214   213 3   216     3     1     1    10    29 -18.178  -0.000 -16.832                          0.078  0.715 -0.705 -0.535 
     D   215   213 3   216     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   216   216 3   216     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     47      - a - - -
    ML   217   216 3   219     3     1     1     9    27 -18.178  -0.000 -16.832                          0.395  0.394 -0.545 -0.543 
     D   218   216 3   219     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   219   219 3   219     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     48      - a - - -
    ML   220   219 3   222     3     1     1     7    26 -18.178  -0.000 -16.832                          0.595 -0.545 -0.499  0.133 
     D   221   219 3   222     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   222   222 3   222     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     49      - A - - -
    ML   223   222 3   225     3     1     1     4     7  -2.237  -0.344 -13.857                          1.723 -3.050 -3.404 -1.051 
     D   224   222 3   225     3     0     0     3     6  -6.174  -1.687  -0.566                         
    IL   225   225 3   225     3     1     1     4     6 -10.636  -0.001 -13.336                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     51      - A - - -
    ML   226   225 3   228     2     1     1     1     1       *   0.000                                  1.897 -4.935 -2.224 -5.153 
     D   227   225 3   228     2     0     0     0     0       *   0.000                                 
    IL   228   228 3   228     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    41 ]      -      - - - - -
     E   229   228 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Trp
ACC   bact-Trp-r2-022416
LENG  72
MAXL  1176
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 21:16:42 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Trp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Trp-r2-022416.sto
NSEQ  4502
EFFN  19.736952
CKSUM 2586054545
STATS LOCAL MSV       -7.9944  0.71930
STATS LOCAL VITERBI   -9.1837  0.71930
STATS LOCAL FORWARD   -3.6338  0.71930
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46188  1.39934  1.27111  1.42328
          1.38629  1.38629  1.38629  1.38629
          0.05338  5.31612  3.05625  1.46634  0.26236  0.00000        *
      1   0.91896  3.13114  0.67976  2.98264      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01031  5.27306  5.27306  1.46634  0.26236  2.44944  0.09030
      2   2.43649  1.09132  0.73112  2.34978      2 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.01029  5.27478  5.27478  1.46634  0.26236  2.44944  0.09030
      3   2.16114  3.34542  0.21402  3.16460      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01029  5.27497  5.27497  1.46634  0.26236  0.18957  1.75629
      4   1.17611  2.53735  0.64525  2.43140      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00985  5.31857  5.31857  1.46634  0.26236  1.09861  0.40547
      5   2.07307  1.77524  0.44536  2.74630      5 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.00985  5.31857  5.31857  1.46634  0.26236  1.09861  0.40547
      6   1.99075  0.88836  1.99916  1.15002      6 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.02726  3.81721  5.31857  0.39828  1.11313  1.09861  0.40547
      7   1.68120  2.90345  0.44243  2.14953      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03059  4.06125  4.35070  0.89574  0.52477  1.09861  0.40547
      8   4.02080  3.70606  4.30624  0.05763     11 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00991  5.31262  5.31262  1.46634  0.26236  0.56506  0.84009
      9   0.21423  2.51562  2.41614  3.78267     12 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01412  5.32063  4.69635  1.46634  0.26236  1.09861  0.40547
     10   2.32000  3.18533  0.21687  2.89448     13 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00987  5.31639  5.31639  1.46634  0.26236  0.72817  0.65931
     11   3.48636  0.94608  2.91901  0.64029     14 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01931  4.25217  5.32063  0.58585  0.81335  1.09861  0.40547
     12   2.60131  1.89969  1.85220  0.47914     16 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.04051  3.35928  5.31124  0.26091  1.47120  1.09861  0.40547
     13   2.82950  0.48441  2.69836  1.35642     18 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01232  5.32059  4.91299  1.46634  0.26236  1.10175  0.40390
     14   0.06136  3.90447  4.11371  3.77157     19 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00985  5.31812  5.31812  1.46634  0.26236  1.24698  0.33880
     15   0.21403  3.81691  1.90341  3.83425     20 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.02451  5.31817  3.94697  1.46634  0.26236  1.25368  0.33611
     16   1.80040  0.82413  3.36687  1.01706     21 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.37882  1.17002  5.30366  0.16734  1.87024  0.37165  1.16989
     17   4.54669  5.94631  0.02128  4.84833     25 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     18   4.63207  6.10222  0.01631  5.47142     26 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     19   3.32181  1.68317  3.96387  0.27557     27 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.16692  1.90484  5.32064  0.19936  1.71066  1.09861  0.40547
     20   0.15503  4.27439  2.18031  4.09356     31 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     21   1.70881  2.91662  0.37904  2.52218     32 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     22   0.51367  1.86070  1.84991  2.42034     33 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01279  5.32063  4.85123  1.46634  0.26236  1.09861  0.40547
     23   0.80519  3.04966  0.75817  3.29419     34 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.00986  5.31770  5.31770  1.46634  0.26236  0.81126  0.58752
     24   3.02608  0.39324  3.00416  1.48261     35 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     25   0.56138  3.02003  1.19829  2.53742     36 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02309  5.32063  4.02071  1.46634  0.26236  1.09861  0.40547
     26   1.49369  1.48269  1.28642  1.30132     37 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00996  5.30750  5.30750  1.46634  0.26236  1.73502  0.19407
     27   1.92969  0.79990  1.93726  1.34195     38 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00996  5.30750  5.30750  1.46634  0.26236  0.91823  0.50953
     28   1.90770  2.51581  0.55377  1.62963     39 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.06589  4.47887  2.94842  0.71791  0.66898  1.48292  0.25744
     29   2.82106  1.68143  0.33104  3.31942     41 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.42665  1.07254  5.26508  0.02995  3.52328  2.64285  0.07382
     30   1.64367  1.76544  2.55213  0.58393     43 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.02860  5.26508  3.77117  1.46634  0.26236  2.64285  0.07382
     31   3.77432  0.19432  4.32503  1.96310     44 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01058  5.24706  5.24706  1.46634  0.26236  2.86264  0.05881
     32   3.76111  3.77974  4.17110  0.06350     45 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01058  5.24706  5.24706  1.46634  0.26236  0.12130  2.16949
     33   1.30036  1.04276  1.83346  1.53606     46 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     34   1.13658  1.24001  1.74516  1.53672     47 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     35   1.03188  1.72718  1.71485  1.25216     48 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     36   0.24263  2.98708  3.19340  2.08767     49 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.22211  1.63872  5.30995  0.04961  3.02826  1.09861  0.40547
     37   0.11037  3.83383  2.79996  3.81391     51 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.03412  5.32058  3.55239  1.46634  0.26236  1.09150  0.40904
     38   0.64753  2.26922  1.71130  1.64692     52 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.20135  2.75685  2.12959  0.31608  1.30565  0.56791  0.83634
     39   3.34874  0.23989  2.90721  2.09131     55 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.12216  5.19502  2.21228  1.46634  0.26236  3.30108  0.03754
     40   2.91583  0.44279  2.31030  1.58782     56 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.02148  5.08531  4.19521  1.46634  0.26236  3.82611  0.02204
     41   1.86141  2.68377  0.50213  1.76610     57 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01256  5.07639  5.07639  1.46634  0.26236  0.04319  3.16377
     42   1.39008  1.72144  1.37902  1.13846     58 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     43   1.06316  1.92987  1.21952  1.54133     59 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.07718  5.32064  2.66802  1.46634  0.26236  1.09861  0.40547
     44   1.19241  2.59203  0.79095  1.78243     60 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.52664  0.90588  5.25397  4.29409  0.01374  0.20665  1.67826
     45   2.79884  2.67755  0.31461  1.96389    188 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.67637  1.07006  1.90681  1.02675  0.44343  1.39199  0.28579
     46   0.75415  2.55285  2.66545  0.96191    193 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01154  5.16056  5.16056  1.46634  0.26236  0.06203  2.81098
     47   3.41486  1.96822  3.51669  0.22600    194 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     48   1.98933  2.69758  0.30522  2.83217    195 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     49   2.16061  0.82602  1.53209  1.46588    196 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     50   1.03935  2.50467  0.70335  2.66369    197 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     51   2.49690  4.38499  0.11409  4.34134    198 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     52   4.32412  5.43642  0.02222  5.43119    199 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     53   3.75223  3.84004  4.28036  0.06059    200 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     54   5.32113  4.97178  5.91210  0.01463    201 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     55   4.30930  0.04341  4.79335  3.87525    202 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     56   1.97439  4.31638  0.18638  4.02592    203 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     57   0.01961  5.19746  4.90102  5.04379    204 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     58   1.46484  1.19420  1.48875  1.42593    205 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     59   3.51197  2.88876  3.90300  0.11167    206 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     60   5.44585  0.03221  5.34437  3.78950    207 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     61   4.70167  0.12380  4.11086  2.39720    208 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     62   2.80519  0.98770  2.42902  0.73616    209 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     63   1.67173  2.50340  0.76574  1.32695    210 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01610  4.50247  5.32063  0.72833  0.65916  1.09861  0.40547
     64   3.07782  0.38152  2.55001  1.64487    212 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.03224  3.82673  4.61063  0.40098  1.10765  1.09861  0.40547
     65   2.27243  0.47013  2.74521  1.57124    215 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02717  5.31556  3.82166  1.46634  0.26236  0.68475  0.70161
     66   1.79769  2.10672  0.57695  1.89001    216 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.01000  5.30360  5.30360  1.46634  0.26236  1.86477  0.16834
     67   3.13686  0.48613  1.67643  1.86732    217 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01000  5.30360  5.30360  1.46634  0.26236  1.86477  0.16834
     68   2.72993  0.69374  2.29845  1.09465    218 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01000  5.30360  5.30360  1.46634  0.26236  1.86477  0.16834
     69   3.43189  0.23942  3.32129  1.93459    219 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01000  5.30360  5.30360  1.46634  0.26236  0.37087  1.17162
     70   2.53223  0.82091  1.07353  1.97555    220 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.00983  5.32063  5.32063  1.46634  0.26236  1.09861  0.40547
     71   3.09837  0.83140  2.90867  0.76595    221 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.01736  4.39648  5.32063  0.66450  0.72264  1.09861  0.40547
     72   1.39637  3.19747  0.40617  3.09135    223 G - - :
          1.38629  1.38629  1.38629  1.38629
          0.61462  0.77837        *  1.10275  0.40340  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Tyr
ACC      bact-Tyr-r2-022416
STATES   277
NODES    76
CLEN     86
W        1348
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 21:26:33 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Tyr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Tyr-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Tyr-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     6587
EFFN     6587.000000
CKSUM    2718432070
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -9.8123 0.71879
ECMLC    0.71970    -7.89426     0.92186     1600000      683560  0.001756
ECMGC    0.30927   -40.56637   -28.42132     1600000       17112  0.023375
ECMLI    0.58519    -9.83001     0.93390     1600000      652757  0.001838
ECMGI    0.31125   -37.53152   -25.52005     1600000       16816  0.023787
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1348  2907 -17.612 -18.857  -0.670  -1.429                 
    IL     1     1 2     1     4    37    60  1353  2911  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    38    60  1353  2912  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    225 - A - -
    MR     3     2 3     5     3    37    60  1352  2911 -18.350  -0.000 -16.668                          2.000 -13.978 -13.243 -13.310 
     D     4     2 3     5     3    34    57  1349  2908 -18.685 -13.863  -0.000                         
    IR     5     5 3     5     3    37    60  1352  2911  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    224 - C - -
    MR     6     5 3     8     3    36    59  1351  2910 -18.350  -0.000 -16.668                         -15.018  2.000 -16.177 -13.149 
     D     7     5 3     8     3    34    57  1349  2908 -18.685 -13.863  -0.000                         
    IR     8     8 3     8     3    36    59  1351  2910  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    223 - C - -
    MR     9     8 3    11     3    35    58  1350  2909 -18.350  -0.000 -16.668                         -15.018  2.000 -16.177 -13.149 
     D    10     8 3    11     3    34    57  1349  2908 -18.685  -0.000 -12.915                         
    IR    11    11 3    11     3    32    54  1350  2909  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    222 - A - -
    MR    12    11 3    14     5    34    57  1349  2908  -3.588  -0.134 -17.475  -7.446 -18.579          1.550 -0.749 -1.150 -5.223 
     D    13    11 3    14     5    29    50  1346  2905  -5.352  -0.707  -2.978  -4.409  -2.404         
    IR    14    14 3    14     5    34    57  1349  2908 -10.879  -0.001 -14.390 -12.558 -13.663          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    220 G C - -
    MP    15    14 3    19     6    33    56  1348  2907 -18.580 -18.519  -0.007 -17.296 -17.576  -7.680 -16.334 -13.146 -18.026 -3.884 -17.984 -14.366 -3.050 -17.708 -14.500  3.896 -14.714 -5.056 -0.170 -14.811 -14.813 -16.876 
    ML    16    14 3    19     6    30    51  1345  2903  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    17    14 3    19     6    32    52  1343  2902 -12.581 -11.310  -5.210 -11.288  -0.043  -9.501 -6.761  1.988 -7.215 -5.837 
     D    18    14 3    19     6    28    49  1343  2902  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    19    19 5    19     6    31    52  1347  2905  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    31    53  1347  2905  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    219 G C - -
    MP    21    20 6    25     6    34    55  1346  2905 -18.573 -18.513  -0.000 -17.289 -17.569 -17.964 -14.760 -0.035 -14.994 -2.912 -4.221 -16.546 -1.617 -15.040 -14.384  3.820 -14.977 -1.991 -12.337 -15.778 -14.246 -2.923 
    ML    22    20 6    25     6    28    49  1342  2901  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    23    20 6    25     6    31    51  1342  2900 -12.551 -11.280  -1.594 -11.258  -0.586  -9.472 -4.846  0.665  1.232 -5.020 
     D    24    20 6    25     6    28    49  1343  2902 -14.946 -13.645  -0.078 -10.124 -10.141  -4.308 
    IL    25    25 5    25     6    29    50  1344  2903  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    29    50  1344  2903  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    218 A U - -
    MP    27    26 6    31     6    32    53  1344  2903 -18.583 -18.522  -0.003  -8.937 -17.578 -17.973 -13.891 -9.537 -1.944  3.212 -14.833 -14.932 -0.638 -10.682 -13.886  1.963 -14.327 -10.057  0.845 -14.097 -12.092 -2.932 
    ML    28    26 6    31     6    28    48  1339  2898  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    29    26 6    31     6    30    50  1339  2898 -11.985 -10.714  -6.623 -10.692  -0.020  -8.906 -3.859 -3.977  0.429  1.334 
     D    30    26 6    31     6    25    46  1335  2893 -10.730  -9.428  -5.226  -5.908  -5.925  -0.092 
    IL    31    31 5    31     6    29    50  1342  2901  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    29    50  1342  2901  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    217 G C - -
    MP    33    32 6    37     6    31    52  1342  2901  -3.945 -18.519  -0.112  -6.710 -17.575 -17.970 -13.393 -12.119 -13.193 -0.235 -13.560 -13.765 -0.327 -8.280 -13.509  3.706 -13.773 -7.165 -0.256 -13.142 -1.151 -12.124 
    ML    34    32 6    37     6    26    46  1335  2894 -10.590 -10.936  -5.650  -5.344 -10.785  -0.068 -5.271  1.966 -5.767 -4.370 
    MR    35    32 6    37     6    29    49  1338  2897 -11.985 -10.714  -6.623 -10.692  -0.020  -8.906 -6.130  1.981 -6.582 -5.234 
     D    36    32 6    37     6    25    46  1334  2893 -10.730  -9.428  -5.226  -5.908  -5.925  -0.092 
    IL    37    37 5    37     6    27    47  1336  2895  -1.001 -12.666 -10.584 -14.321 -15.097  -1.001  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    29    50  1341  2900  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      7    216 G C - -
    MP    39    38 6    43     6    31    52  1340  2899 -18.468  -7.227  -0.010 -17.184 -17.464 -17.859 -12.442 -9.174 -12.262  2.428 -13.319 -4.036 -0.080 -4.786 -12.691  3.066 -12.942 -7.413  0.014 -12.121 -2.453 -11.222 
    ML    40    38 6    43     6    29    50  1339  2897 -12.760 -13.107  -7.821  -0.008 -12.956 -10.486  1.995 -8.172 -7.437 -7.569 
    MR    41    38 6    43     6    28    48  1337  2896 -11.985 -10.714  -6.623 -10.692  -0.020  -8.906 -6.130  1.981 -6.582 -5.234 
     D    42    38 6    43     6    25    45  1334  2893 -18.708 -17.406 -13.203 -13.885  -8.483  -0.004 
    IL    43    43 5    43     6    29    49  1339  2898  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    30    50  1339  2898  -7.170  -0.016 -10.681  -8.849  -9.954          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      8    214 G C - -
    MP    45    44 6    49     6    29    50  1338  2897  -6.045 -18.407  -0.040  -7.427  -7.265 -17.859 -12.434 -9.420 -12.252  0.947 -13.370 -12.849 -0.041 -12.938 -12.689  3.476 -8.193 -2.352  0.592 -12.107 -2.028 -5.602 
    ML    46    44 6    49     6    28    49  1338  2896 -12.760 -13.107  -7.821  -0.008 -12.956 -10.486 -6.670 -8.438  1.993 -7.432 
    MR    47    44 6    49     6    27    47  1336  2895 -12.052 -10.781  -1.320 -10.759  -0.746  -8.972 -1.912  1.194 -4.149  0.474 
     D    48    44 6    49     6    25    45  1334  2893 -18.704 -17.402 -13.199 -13.881 -13.899  -0.000 
    IL    49    49 5    49     6    29    49  1338  2897  -1.329 -10.197  -0.736 -11.852 -12.628 -12.289  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    28    48  1337  2896  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]     11    213 G C - -
    MP    51    50 6    55     4    27    48  1336  2895  -3.398 -17.889  -0.147  -8.929                 -12.428 -11.065 -12.247  1.405 -13.375 -12.841 -1.719 -12.935 -12.682  3.420 -12.929 -0.786  0.707 -10.438 -2.965 -11.212 
    ML    52    50 6    55     4    27    48  1337  2895 -10.486  -0.177  -3.144  -9.398                  1.829 -7.423 -1.203 -7.291 
    MR    53    50 6    55     4    26    46  1334  2893 -11.135 -10.164  -1.825  -0.481                 -7.358  1.992 -7.828 -6.391 
     D    54    50 6    55     4    25    45  1334  2893 -14.126 -13.807  -0.046  -4.997                 
    IL    55    55 5    55     4    26    46  1335  2894 -11.154 -11.837  -0.001 -14.323                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    27    47  1336  2894  -1.262  -0.780 -10.677                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     13      - U - - -
    ML    57    56 6    59     3    25    45  1334  2893 -18.713  -0.000 -17.367                         -4.830 -1.294 -3.599  1.797 
     D    58    56 6    59     3    24    44  1333  2892 -13.492  -0.006  -7.883                         
    IL    59    59 3    59     3    25    46  1335  2893  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     14      - g - - -
    ML    60    59 3    62     2    24    44  1333  2892  -5.433  -0.034                                  0.377 -0.970  0.535 -0.431 
     D    61    59 3    62     2    23    43  1332  2891  -8.445  -0.004                                 
    IL    62    62 3    62     2    25    45  1334  2892  -1.483  -0.639                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3    64   176    23    43  1332  2891                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S    64    63 1    65     1     9    18  1301  2860   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B    65    64 1    66   119     9    18  1301  2860                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S    66    65 1    67     4     0     6  1284  2842  -0.116  -8.016  -3.766 -16.766                 
                                             [ MATP   18 ]     17    141 C G - -
    MP    67    66 1    71     6     2     9  1269  2828  -4.310 -18.412  -0.075 -17.188 -17.468 -17.863 -12.979 -4.363 -12.909 -2.869 -12.143 -13.660  3.215 -4.651 -12.916  2.623 -13.354 -4.757 -1.924 -7.928 -5.352 -11.602 
    ML    68    66 1    71     6     1     5  1333  2892 -11.483 -11.829  -6.543  -1.075  -0.965  -9.208 -5.519 -7.230  1.985 -6.269 
    MR    69    66 1    71     6     1     7  1373  2932 -16.234 -14.963  -5.280 -14.941  -0.038 -13.155  1.853 -10.027 -1.376 -9.845 
     D    70    66 1    71     6     0     1  1261  2820  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    71    71 5    71     6     1     7  1270  2829  -2.641  -0.815  -1.884 -13.103 -13.879 -13.539  0.000  0.000  0.000  0.000 
    IR    72    72 6    72     5     1     7  1269  2828  -1.125  -0.886 -13.882 -12.050 -13.155          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     20    138 C G - -
    MP    73    72 6    77     6     2     8  1267  2826 -18.475 -18.415  -0.000 -17.191 -17.471 -17.866 -15.521 -5.716 -14.844 -5.009 -5.212 -14.992  3.916 -6.130 -14.946 -1.913 -15.069 -14.182 -0.927 -15.359 -5.709 -13.747 
    ML    74    72 6    77     6     1     4  1241  2799 -10.448 -10.794  -5.509  -0.040 -10.644  -8.174  1.972 -5.627 -5.051 -5.297 
    MR    75    72 6    77     6     1     6  1373  2932 -16.237 -14.966  -4.572 -14.945  -0.062 -13.158 -9.301  1.877 -1.625 -8.773 
     D    76    72 6    77     6     0     1  1245  2804  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    77    77 5    77     6     1     2  1273  2832  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    78    78 6    78     5     1     3  1280  2839  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     21    137 C G - -
    MP    79    78 6    83     6     2     6  1265  2824 -18.480  -3.459  -0.138 -17.196 -17.476 -17.871 -12.977 -5.188 -12.937  0.008 -1.990 -4.836  3.005 -12.516 -12.849  2.624 -13.327 -10.156 -1.811 -4.623 -2.648 -11.558 
    ML    80    78 6    83     6     1     4  1239  2797 -10.448 -10.794  -0.048  -5.203 -10.644  -8.174 -4.540 -6.118  1.970 -5.273 
    MR    81    78 6    83     6     1     5  1375  2934 -16.176 -14.905 -10.814 -14.883  -0.001 -13.097 -11.201  1.999 -11.923 -9.779 
     D    82    78 6    83     6     0     1  1218  2777  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    83    83 5    83     6     1     2  1286  2844  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    84    84 6    84     5     1     5  1371  2930 -10.900  -4.173 -14.411  -0.083 -13.685          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     22    135 g a - -
    MP    85    84 6    89     4     2     4  1238  2797  -2.870  -4.090  -0.327  -7.160                  2.075 -0.520 -10.163 -0.682 -4.472 -2.830  0.627 -10.458  2.170  0.595 -7.841 -0.038 -0.578 -10.305 -0.438 -1.561 
    ML    86    84 6    89     4     1     2  1208  2767  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    87    84 6    89     4     1     4  1374  2933 -15.293  -0.001 -12.189 -11.250                 -12.573  2.000 -13.441 -10.970 
     D    88    84 6    89     4     0     1  1174  2733  -4.568  -4.250  -2.265  -0.520                 
    IL    89    89 5    89     4     1     4  1375  2933  -1.623  -0.567 -11.579 -15.316                  0.000  0.000  0.000  0.000 
    IR    90    90 6    90     3     1     3  1373  2932  -0.017  -8.703  -6.741                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     25      - A - - -
    ML    91    90 6    93     3     1     2    41    81 -18.297  -0.000 -16.951                          1.824 -1.970 -5.274 -2.493 
     D    92    90 6    93     3     0     1    40    80 -18.191  -0.000 -12.583                         
    IL    93    93 3    93     3     1     1    42    82  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     26      - G - - -
    ML    94    93 3    96     3     1     2    40    80 -18.727  -0.000 -17.381                         -1.511 -5.361  1.823 -3.509 
     D    95    93 3    96     3     0     0    37    77  -6.174  -1.687  -0.566                         
    IL    96    96 3    96     3     1     1    41    81  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     27      - U - - -
    ML    97    96 3    99     3     1     2    39    79  -1.752  -0.508 -17.381                         -0.926 -0.226 -0.728  1.010 
     D    98    96 3    99     3     0     0    32    71  -6.174  -1.687  -0.566                         
    IL    99    99 3    99     3     1     2    41    80  -0.672  -1.425 -15.793                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     33      - G - - -
    ML   100    99 3   102     3     1     2    11    29 -18.727  -0.000 -17.381                         -4.308 -15.010  1.978 -6.726 
     D   101    99 3   102     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   102   102 3   102     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     34      - G - - -
    ML   103   102 3   105     3     1     2    10    28 -18.727  -0.000 -17.381                         -6.231 -13.431  1.995 -13.004 
     D   104   102 3   105     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   105   105 3   105     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     35      - C - - -
    ML   106   105 3   108     3     1     1     8    27 -18.727  -0.357  -2.190                         -2.599  1.549 -2.688 -0.409 
     D   107   105 3   108     3     0     0    15    34  -6.174  -1.687  -0.566                         
    IL   108   108 3   108     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     36      - C - - -
    ML   109   108 3   111     3     1     2     7    25  -2.990  -0.194 -17.024                         -3.724  1.027 -2.533  0.777 
     D   110   108 3   111     3     0     0     6    24 -17.956  -0.320  -2.330                         
    IL   111   111 3   111     3     1     1     7    25 -10.076  -0.002 -12.777                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     38      - A - - -
    ML   112   111 3   114     3     1     1     6    24 -18.663  -0.095  -3.972                          1.384 -1.431 -1.519 -0.578 
     D   113   111 3   114     3     0     0     7    25 -15.626  -0.001 -10.018                         
    IL   114   114 3   114     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   30 ]     39      - A - - -
    ML   115   114 3   117     2     1     1     1     1       *   0.000                                  1.812 -13.168 -1.419 -3.126 
     D   116   114 3   117     2     0     0     0     0       *   0.000                                 
    IL   117   117 3   117     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    31 ]      -      - - - - -
     E   118   117 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   32 ]      -      - - - - -
     S   119    65 1   120     3     0     6    38    64 -18.727  -0.000 -17.381                         
    IL   120   120 2   120     3     1     4    40    66  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]    142      - G - - -
    ML   121   120 2   123     5     1     6    38    64  -7.384  -0.009 -17.475 -17.687 -18.579          0.574 -3.050  1.023 -1.482 
     D   122   120 2   123     5     0     2    36    63  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   123   123 3   123     5     1     5    38    64  -7.133  -0.016  -8.812 -10.644  -9.918          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]    144    163 g c - -
    MP   124   123 3   128     6     2     5    37    63 -18.588 -18.528  -0.074 -17.304 -17.584  -4.326 -12.559 -1.732 -12.381 -0.098 -5.596 -8.615  1.255 -2.298 -3.379  2.813 -13.059  1.728  0.695 -3.575 -6.570 -11.339 
    ML   125   123 3   128     6     1     2    35    62  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   126   123 3   128     6     1     2    35    61  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   127   123 3   128     6     0     1    32    58  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   128   128 5   128     6     1     2    36    63  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   129   129 6   129     5     1     2    36    62  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]    145    162 C G - -
    MP   130   129 6   134     6     2     6    35    61 -18.515 -18.454  -0.000 -17.230 -17.510 -17.905 -15.570 -15.838 -14.890 -12.076 -13.244 -15.037  3.871 -14.157 -14.992 -0.377 -15.114 -4.126 -0.903 -15.408 -8.821 -13.795 
    ML   131   129 6   134     6     1     1    33    60  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   132   129 6   134     6     1     1    32    59  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   133   129 6   134     6     0     1    23    49 -18.287 -16.986 -12.783 -13.465  -0.002  -9.558 
    IL   134   134 5   134     6     1     1    34    61  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   135   135 6   135     5     1     1    34    60  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]    146    161 g c - -
    MP   136   135 6   140     6     2     6    33    59 -18.515 -18.454  -0.000 -17.230 -17.510 -17.905 -12.479 -5.379 -12.298  2.231 -13.422  0.022  0.467 -6.153 -2.419  2.695 -12.982 -4.014  1.046 -6.155 -10.498 -3.955 
    ML   137   135 6   140     6     1     1    31    58  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 6   140     6     1     3    23    49 -15.676 -14.405 -10.314 -14.383  -0.002 -12.597 -8.943 -10.713  1.999 -9.700 
     D   139   135 6   140     6     0     0    28    55  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     1    32    59  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     1    32    58  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]    147    160 G C - -
    MP   142   141 6   146     6     2     4    31    57  -3.977 -18.454  -0.095 -17.230 -17.510 -17.905 -16.488 -13.070 -19.022 -10.563 -18.090 -14.220 -1.252 -18.381 -14.442  3.952 -14.629 -3.797 -12.742 -4.844 -14.829 -18.238 
    ML   143   141 6   146     6     1     1    29    56  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   144   141 6   146     6     1     2    20    47 -15.676 -14.405 -10.314 -14.383  -0.002 -12.597 -10.559  1.999 -11.223 -9.224 
     D   145   141 6   146     6     0     0    27    53  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     3    30    56 -11.308 -11.570  -0.001 -13.226 -14.002 -13.662  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     1    30    56  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   38 ]    149    159 A U - -
    MP   148   147 6   152     4     2     2    29    55  -4.088 -17.951  -0.090  -9.117                 -7.134 -13.219 -14.706  3.456 -16.342 -17.482 -0.504 -8.340 -14.304  1.119 -14.952 -5.688  1.084 -15.882 -13.712 -13.323 
    ML   149   147 6   152     4     1     1    28    54  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   150   147 6   152     4     1     1    18    45 -13.702 -12.731 -10.598  -0.001                 -11.571 -10.261 -13.053  2.000 
     D   151   147 6   152     4     0     0    26    53  -4.568  -4.250  -2.265  -0.520                 
    IL   152   152 5   152     4     1     2    31    57  -1.001 -12.208  -1.000 -14.693                  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]    152      - C - - -
    ML   154   153 6   156     3     1     1    12    31 -18.651  -0.127  -3.570                         -7.199  1.837 -4.467 -1.417 
     D   155   153 6   156     3     0     0    12    30 -15.871 -11.384  -0.001                         
    IL   156   156 3   156     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]    153      - U - - -
    ML   157   156 3   159     3     1     2    11    30 -18.524  -0.000 -17.178                         -15.649 -5.105 -17.099  1.989 
     D   158   156 3   159     3     0     0    11    29 -17.219  -0.719  -1.349                         
    IL   159   159 3   159     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]    154      - g - - -
    ML   160   159 3   162     3     1     1    10    28 -18.651  -0.000 -17.305                          0.087 -0.464  0.324 -0.057 
     D   161   159 3   162     3     0     0    10    29 -15.871  -0.001 -10.262                         
    IL   162   162 3   162     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]    155      - u - - -
    ML   163   162 3   165     3     1     1     9    27 -18.727  -0.000 -17.381                         -0.539 -0.173 -0.124  0.592 
     D   164   162 3   165     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   165   165 3   165     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]    156      - a - - -
    ML   166   165 3   168     3     1     1     7    26 -18.727  -0.000 -17.381                          0.250  0.012 -0.537  0.154 
     D   167   165 3   168     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]    157      - A - - -
    ML   169   168 3   171     3     1     1     6    24 -18.727  -0.000 -17.381                          1.717 -1.457 -3.055 -2.129 
     D   170   168 3   171     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   171   171 3   171     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]    158      - A - - -
    ML   172   171 3   174     2     1     1     1     1       *   0.000                                  1.794 -1.048 -8.991 -4.413 
     D   173   171 3   174     2     0     0     0     0       *   0.000                                 
    IL   174   174 3   174     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    46 ]      -      - - - - -
     E   175   174 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   47 ]      -      - - - - -
     S   176    63 1   177     3     1    10    49    76 -18.727  -0.000 -17.381                         
    IL   177   177 2   177     3     1    12    52    78  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]    164      - U - - -
    ML   178   177 2   180     2     1    10    49    76  -2.296  -0.329                                 -3.206  0.787 -4.454  1.084 
     D   179   177 2   180     2     0     9    47    74  -8.445  -0.004                                 
    IL   180   180 3   180     2     1    10    49    76  -1.630  -0.563                                  0.000  0.000  0.000  0.000 
                                             [ BIF    49 ]      -      - - - - -
     B   181   180 3   182   214     0     9    47    74                                                 
                                             [ BEGL   50 ]      -      - - - - -
     S   182   181 1   183     4     0     0    24    38  -0.100  -5.224  -6.450  -5.114                 
                                             [ MATP   51 ]    167    186 G C - -
    MP   183   182 1   187     6     2     2    24    38 -18.488 -18.428  -0.003  -8.716 -17.484 -17.879 -13.007 -11.637 -12.832 -1.870 -13.494 -4.685  1.206 -13.361 -13.134  3.554 -13.382 -2.370 -1.293 -12.666  0.049 -11.780 
    ML   184   182 1   187     6     1     1    22    37 -14.244 -14.590  -9.305  -0.129 -14.440  -3.575 -9.409  1.998 -9.983 -8.224 
    MR   185   182 1   187     6     1     1    22    36 -13.562 -12.291  -1.799 -12.269  -0.491 -10.482 -7.890  1.994 -8.379 -6.875 
     D   186   182 1   187     6     0     0    17    32 -17.501 -16.199 -11.996 -12.678 -12.696  -0.001 
    IL   187   187 5   187     6     1     1    24    39  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   188   188 6   188     5     1     1    23    38  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    168    185 c g - -
    MP   189   188 6   193     6     2     2    22    36 -18.490 -18.429  -0.308 -17.206 -10.520  -2.383 -13.138 -10.327 -13.112 -1.055 -12.075 -13.945  2.981 -12.685 -12.994  2.570 -13.485 -5.771  0.728 -13.318 -6.735 -11.724 
    ML   190   188 6   193     6     1     1    21    36 -14.242 -14.588  -9.303  -0.003 -14.438 -11.968  1.496 -7.732 -8.400  0.228 
    MR   191   188 6   193     6     1     1    18    32 -13.080 -11.809  -7.717 -11.787  -0.009 -10.000  1.994 -7.965 -7.240 -7.377 
     D   192   188 6   193     6     0     0    17    32 -17.609 -16.307 -12.104 -12.786 -12.804  -0.001 
    IL   193   193 5   193     6     1     1    22    37  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   194   194 6   194     5     1     1    21    36  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    169    184 C G - -
    MP   195   194 6   199     4     2     2    20    35  -2.376  -6.048  -0.336 -16.032                 -12.524 -12.228 -12.520 -2.023 -11.380 -3.666  3.585 -5.166 -4.607 -0.239 -12.890 -5.426 -1.634 -12.705  1.017 -1.358 
    ML   196   194 6   199     4     1     1    20    35  -0.007 -11.510  -8.076 -10.240                  0.217 -5.923 -1.585  1.315 
    MR   197   194 6   199     4     1     1    16    30 -11.209  -0.124  -3.743  -7.166                 -5.830 -2.157 -6.573  1.906 
     D   198   194 6   199     4     0     0    17    32  -3.508  -7.958  -0.225  -4.252                 
    IL   199   199 5   199     4     1     1    19    34  -1.805  -0.622  -3.959 -15.949                  0.000  0.000  0.000  0.000 
    IR   200   200 6   200     3     1     1    15    29  -2.105  -0.435  -5.156                          0.000  0.000  0.000  0.000 
                                             [ MATL   54 ]    174      - U - - -
    ML   201   200 6   203     3     1     1     8    26 -18.701  -0.000 -17.355                         -0.542 -4.498 -0.754  1.420 
     D   202   200 6   203     3     0     0    10    28 -14.359  -6.154  -0.020                         
    IL   203   203 3   203     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]    175      - U - - -
    ML   204   203 3   206     3     1     1     6    25 -18.701  -0.000 -17.355                         -0.885  0.289 -5.355  1.145 
     D   205   203 3   206     3     0     0     8    27 -14.341  -4.313  -0.075                         
    IL   206   206 3   206     3     1     1    18    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   56 ]    176      - a - - -
    ML   207   206 3   209     3     1     1     5     9  -7.148  -0.685  -1.430                          0.742  0.487 -2.595 -0.393 
     D   208   206 3   209     3     0     0     3     7 -14.268  -9.781  -0.002                         
    IL   209   209 3   209     3     1     1     5     9  -6.297  -0.021  -8.997                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    178      - a - - -
    ML   210   209 3   212     2     1     1     1     1       *   0.000                                  0.309  0.049 -0.319 -0.113 
     D   211   209 3   212     2     0     0     0     0       *   0.000                                 
    IL   212   212 3   212     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    58 ]      -      - - - - -
     E   213   212 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   59 ]      -      - - - - -
     S   214   181 1   215     3     0     1    37    63 -18.727  -0.000 -17.381                         
    IL   215   215 2   215     3     1     1    39    65  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    187      - U - - -
    ML   216   215 2   218     3     1     1    37    63  -7.106  -0.050  -5.223                         -2.319 -0.873 -2.424  1.617 
     D   217   215 2   218     3     0     0    35    62  -6.174  -1.687  -0.566                         
    IL   218   218 3   218     3     1     3    37    63  -6.362  -0.020  -9.062                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    189      - U - - -
    ML   219   218 3   221     3     1     2    36    62 -18.688  -0.000 -17.342                         -0.079 -0.373 -2.374  1.062 
     D   220   218 3   221     3     0     0    35    61 -14.925  -0.002  -9.317                         
    IL   221   221 3   221     3     1     1    37    63  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    190      - C - - -
    ML   222   221 3   224     5     1     2    35    61 -17.660  -0.000 -17.475 -17.687 -18.579         -2.326  1.599 -1.332 -1.418 
     D   223   221 3   224     5     0     0    33    60  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   224   224 3   224     5     1     1    35    61  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   63 ]    191    210 G C - -
    MP   225   224 3   229     6     2     2    34    60 -18.588 -18.528  -0.000 -17.304 -17.584 -17.979 -15.801 -13.140 -16.603 -0.974 -17.481 -14.564  0.631 -16.600 -14.463  3.751 -14.739 -1.409 -3.307 -14.883 -14.470 -15.338 
    ML   226   224 3   229     6     1     1    33    59  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   227   224 3   229     6     1     1    32    59  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   228   224 3   229     6     0     0    30    56  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   229   229 5   229     6     1     1    33    60  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   230   230 6   230     5     1     1    33    59  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   64 ]    192    209 c g - -
    MP   231   230 6   235     6     2     2    32    58 -18.588 -18.528  -0.000 -13.461 -17.584 -17.979 -12.879 -10.007 -12.876  1.269 -11.765 -13.714  2.717 -6.779 -12.744  0.974 -13.253  1.515  0.845 -6.467 -1.856 -3.309 
    ML   232   230 6   235     6     1     1    32    58  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   233   230 6   235     6     1     1    31    57  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   234   230 6   235     6     0     0    29    56  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   235   235 5   235     6     1     1    31    58  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   236   236 6   236     5     1     1    31    58  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   65 ]    193    208 a u - -
    MP   237   236 6   241     6     2     2    30    56 -18.588 -18.528  -0.000 -17.304 -17.584 -17.979 -12.945 -12.628 -12.936  2.933 -4.638 -13.766  0.979 -12.464 -12.804  1.430 -13.310 -3.614  1.737 -13.118 -2.065 -11.522 
    ML   238   236 6   241     6     1     1    31    58  -7.085  -7.431  -0.588  -1.840  -7.281  -4.811  1.225 -1.137 -0.879 -0.592 
    MR   239   236 6   241     6     1     1    29    56  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   240   236 6   241     6     0     0    29    55  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   241   241 5   241     6     1     1    30    57  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   242   242 6   242     5     1     1    29    56  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   66 ]    194    207 G C - -
    MP   243   242 6   247     6     2     2    28    54  -7.419 -18.528  -0.030  -6.099 -17.584 -17.979 -16.255 -13.163 -17.712  0.426 -17.811 -14.413 -4.128 -17.443 -14.507  3.858 -14.732 -11.043 -3.307 -14.844 -14.725 -16.511 
    ML   244   242 6   247     6     1     1    32    58  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   245   242 6   247     6     1     1    28    55  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   246   242 6   247     6     0     0    28    54  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   247   247 5   247     6     1     1    23    50  -7.970  -8.233  -0.014  -9.888 -10.665 -10.325  0.000  0.000  0.000  0.000 
    IR   248   248 6   248     5     1     1    28    54  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   67 ]    196    206 G C - -
    MP   249   248 6   253     4     2     2    16    41 -17.797 -18.004  -0.000 -16.418                 -16.401 -13.127 -18.344 -2.564 -18.084 -14.322 -12.426 -17.953 -14.489  3.974 -14.693 -3.076 -12.777 -14.777 -14.856 -17.268 
    ML   250   248 6   253     4     1     1    32    58  -0.013 -10.644  -7.210  -9.373                 -9.284 -8.253 -10.473  1.998 
    MR   251   248 6   253     4     1     1    27    53  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   252   248 6   253     4     0     0    26    53  -4.568  -4.250  -2.265  -0.520                 
    IL   253   253 5   253     4     1     1    31    57  -1.002 -10.276  -1.000 -12.761                  0.000  0.000  0.000  0.000 
    IR   254   254 6   254     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   68 ]    199      - U - - -
    ML   255   254 6   257     3     1     1    12    31 -18.727  -0.000 -17.381                         -15.878 -5.189 -17.348  1.990 
     D   256   254 6   257     3     0     0    19    37  -6.174  -1.687  -0.566                         
    IL   257   257 3   257     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   69 ]    200      - U - - -
    ML   258   257 3   260     3     1     1    11    30 -18.727  -0.000 -17.381                         -12.781 -6.743 -4.533  1.981 
     D   259   257 3   260     3     0     0    18    36  -6.174  -1.687  -0.566                         
    IL   260   260 3   260     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   70 ]    201      - C - - -
    ML   261   260 3   263     3     1     1    10    28 -18.727  -0.000 -17.381                         -14.831  1.992 -15.478 -5.555 
     D   262   260 3   263     3     0     0    17    35  -6.174  -1.687  -0.566                         
    IL   263   263 3   263     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   71 ]    202      - G - - -
    ML   264   263 3   266     3     1     1     9    27 -18.727  -0.000 -17.381                         -0.619 -14.837  1.744 -13.954 
     D   265   263 3   266     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   266   266 3   266     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   72 ]    203      - A - - -
    ML   267   266 3   269     3     1     1     7    26 -18.727  -0.000 -17.381                          1.990 -14.635 -13.955 -5.192 
     D   268   266 3   269     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   269   269 3   269     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   73 ]    204      - A - - -
    ML   270   269 3   272     3     1     1     6    24 -18.727  -0.000 -17.381                          1.574 -1.538 -1.078 -2.291 
     D   271   269 3   272     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   272   272 3   272     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   74 ]    205      - U - - -
    ML   273   272 3   275     2     1     1     1     1       *   0.000                                 -3.935 -5.579 -12.870  1.968 
     D   274   272 3   275     2     0     0     0     0       *   0.000                                 
    IL   275   275 3   275     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    75 ]      -      - - - - -
     E   276   275 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Tyr
ACC   bact-Tyr-r2-022416
LENG  86
MAXL  1317
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 21:26:34 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Tyr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Tyr-r2-022416.sto
NSEQ  6587
EFFN  9.476175
CKSUM 2718432070
STATS LOCAL MSV       -8.5996  0.71879
STATS LOCAL VITERBI   -9.8843  0.71879
STATS LOCAL FORWARD   -3.2984  0.71879
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54146  1.26379  1.28751  1.48108
          1.38629  1.38629  1.38629  1.38629
          0.01566  4.85755  4.85755  1.46634  0.26236  0.00000        *
      1   2.98902  3.60120  0.14352  2.88116      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01978  4.85755  4.43856  1.46634  0.26236  1.09861  0.40547
      2   1.90898  2.66950  0.34171  2.63215      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01572  4.85360  4.85360  1.46634  0.26236  0.85256  0.55568
      3   0.97237  2.23180  1.02170  1.86758      3 a - - (
          1.38629  1.38629  1.38629  1.38629
          0.01564  4.85905  4.85905  1.46634  0.26236  1.10512  0.40222
      4   1.99055  2.43049  0.40707  2.20922      4 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.07363  2.78808  4.66213  0.23548  1.56156  1.10512  0.40222
      5   1.32971  2.30077  0.65208  2.16888      7 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.07194  4.85736  2.78639  1.46634  0.26236  1.17472  0.36948
      6   1.76398  2.34292  0.50082  2.06707      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.03459  3.88708  4.30588  0.88743  0.53054  2.30000  0.10565
      7   1.64341  2.61244  0.49193  2.10473     11 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.09936  2.46867  4.61642  0.18448  1.78104  0.30788  1.32804
      8   2.97645  2.21638  3.23785  0.22218     13 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01572  4.85410  4.85410  1.46634  0.26236  0.67867  0.70783
      9   1.15744  1.87283  1.22160  1.43858     14 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.10059  3.61411  2.67718  0.74084  0.64763  1.09861  0.40547
     10   2.39148  0.85691  1.09784  1.89418     17 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.06125  3.00809  4.60244  0.42381  1.06290  2.20634  0.11665
     11   3.75021  0.15117  3.34600  2.50646     20 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01661  4.79920  4.79920  1.46634  0.26236  2.10541  0.12988
     12   2.07663  0.95776  1.14067  1.76439     21 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.09087  4.80191  2.54274  1.46634  0.26236  2.35911  0.09927
     13   1.33873  1.60329  1.23487  1.40358     22 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.13193  2.78353  2.78414  0.26483  1.45815  0.88168  0.53458
     14   0.24835  2.47430  3.01015  2.44865     25 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01768  4.73715  4.73715  1.46634  0.26236  0.11630  2.20915
     15   2.19707  3.44307  0.21644  2.96566     26 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     16   1.59809  1.55775  1.82967  0.85181     27 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.30368  1.36974  4.86232  0.99906  0.45922  1.09861  0.40547
     17   3.70381  5.03305  0.04385  4.44327     33 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     18   4.11439  5.29124  0.03041  4.75867     34 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     19   2.37524  0.47376  2.84636  1.48590     35 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.21982  4.86232  1.66281  1.46634  0.26236  1.09861  0.40547
     20   2.25179  0.84701  2.59663  0.93759     36 c - - _
          1.38629  1.38629  1.38629  1.38629
          0.12627  2.21486  4.66159  0.16498  1.88331  0.28988  1.37974
     21   0.62473  2.04424  2.09531  1.55077     38 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01669  4.82551  4.76384  1.46634  0.26236  0.30196  1.34466
     22   0.21128  3.42932  2.27635  2.89338     39 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.32632  1.30679  4.86183  4.42570  0.01204  1.05792  0.42645
     23   1.09828  1.58106  1.41878  1.51964    135 a - - >
          1.38629  1.38629  1.38629  1.38629
          0.09107  2.55367  4.68311  0.18816  1.76309  1.09861  0.40547
     24   1.95994  1.17463  0.91871  1.88937    137 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01561  4.86080  4.86080  1.46634  0.26236  1.16198  0.37522
     25   2.62937  3.04680  0.16963  3.31342    138 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04439  3.38165  4.66388  0.79914  0.59732  1.16198  0.37522
     26   1.94724  1.19313  0.83135  2.13198    141 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01564  4.85912  4.85912  1.46634  0.26236  0.88150  0.53471
     27   1.09656  2.53054  0.82111  1.92126    142 g - - ,
          1.38629  1.38629  1.38629  1.38629
          0.02064  4.36622  4.86232  0.95931  0.48314  1.09861  0.40547
     28   1.85277  1.79457  0.66217  1.82469    144 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.05856  4.86232  3.01302  1.46634  0.26236  1.09861  0.40547
     29   3.50654  0.24016  2.59233  2.21960    145 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01626  4.82003  4.82003  1.46634  0.26236  2.12291  0.12747
     30   1.40243  1.79151  0.90141  1.70761    146 g - - <
          1.38629  1.38629  1.38629  1.38629
          0.01626  4.82003  4.82003  1.46634  0.26236  2.12291  0.12747
     31   3.31400  3.51914  0.08789  4.00952    147 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.07087  2.80762  4.82003  0.24876  1.51307  2.12291  0.12747
     32   0.78276  2.13736  1.36299  1.77788    149 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.06825  2.87470  4.65242  0.79401  0.60153  2.12291  0.12747
     33   3.34157  0.18829  3.69302  2.19508    152 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.08930  4.81856  2.55939  1.46634  0.26236  2.14451  0.12457
     34   3.85087  3.46948  4.37985  0.06713    153 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01751  4.74677  4.74677  1.46634  0.26236  0.58067  0.81990
     35   1.26058  1.68307  1.35223  1.30179    154 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01629  4.81856  4.81856  1.46634  0.26236  0.26690  1.45137
     36   1.46337  1.55075  1.56877  1.05511    155 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     37   1.20439  1.48004  1.72633  1.22227    156 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     38   0.30938  2.26060  2.77138  2.31024    157 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     39   0.21683  2.21061  3.40188  2.95676    158 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     40   1.91038  1.47045  2.00209  0.71929    159 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     41   4.15278  0.10746  3.42356  2.92676    160 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     42   1.84996  0.93526  1.76119  1.27858    161 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.05856  4.86232  3.01302  1.46634  0.26236  1.09861  0.40547
     43   2.42225  2.71817  0.21797  3.19090    162 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01626  4.82003  4.82003  1.46634  0.26236  0.27360  1.42976
     44   1.99001  0.89365  1.70227  1.30241    163 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     45   2.43034  0.95103  3.08235  0.73439    164 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.22936  1.75066  3.46426  0.42139  1.06751  1.09861  0.40547
     46   2.09113  1.92811  0.50316  2.06819    167 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02828  4.83847  3.91357  1.46634  0.26236  1.49794  0.25307
     47   2.31922  0.93255  1.17005  1.62075    168 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.18676  4.82917  1.81791  1.46634  0.26236  0.88273  0.53384
     48   2.26026  0.70739  1.94320  1.34900    169 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.23136  1.62321  4.68009  0.31215  1.31630  0.13872  2.04385
     49   1.57789  2.47788  1.89485  0.58102    174 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02157  4.85316  4.30268  1.46634  0.26236  1.43013  0.27349
     50   1.76706  1.25531  2.83271  0.72294    175 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01582  4.84741  4.84741  1.46634  0.26236  1.50162  0.25202
     51   1.00093  1.23289  2.31332  1.41849    176 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.27476  4.29216  1.48470  0.91165  0.51393  1.07810  0.41588
     52   1.18390  1.49355  1.64582  1.28559    178 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.39733  2.22362  1.51562  0.33460  1.25745  0.10655  2.29192
     53   1.82634  2.08574  0.55099  1.97756    184 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04881  4.67338  3.26231  1.46634  0.26236  0.22598  1.59819
     54   1.78143  1.22925  0.86356  2.14188    185 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01638  4.81311  4.81311  1.46634  0.26236  2.00709  0.14431
     55   2.55174  0.55241  1.69709  1.81230    186 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01635  4.81503  4.81503  1.46634  0.26236  0.25218  1.50105
     56   2.31443  1.92562  2.68336  0.37533    187 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04469  4.28617  3.50832  0.89614  0.52449  1.09861  0.40547
     57   1.36535  1.60691  2.26744  0.81956    189 u - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01594  4.83986  4.83986  1.46634  0.26236  0.41634  1.07720
     58   2.29749  0.44943  2.35036  1.79480    190 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     59   2.26927  2.38114  0.28627  2.93551    191 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     60   1.81424  1.06359  1.32486  1.48729    192 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     61   1.16382  1.57242  1.49167  1.36582    193 a - - <
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     62   2.37128  3.88094  0.14922  3.70372    194 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02053  4.37529  4.86232  0.96674  0.47855  1.09861  0.40547
     63   3.40593  4.58802  0.05779  4.35831    196 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02797  3.91975  4.86232  0.97312  0.47466  1.09861  0.40547
     64   3.99859  3.58709  4.52809  0.05850    199 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     65   3.42153  3.28003  3.63051  0.10180    200 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     66   4.58561  0.04027  4.97150  3.80130    201 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     67   1.88847  3.99242  0.21751  3.66028    202 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     68   0.03497  4.70858  4.43659  4.30414    203 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     69   0.43488  2.21469  2.05096  2.16405    204 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     70   3.17610  3.26370  3.96510  0.10421    205 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.02797  4.86232  3.91975  1.46634  0.26236  1.09861  0.40547
     71   4.77073  0.06602  4.63105  3.08641    206 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01578  4.85013  4.85013  1.46634  0.26236  0.57619  0.82562
     72   3.87378  0.16733  3.72638  2.21438    207 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01566  4.86232  4.85349  1.46634  0.26236  1.09861  0.40547
     73   1.52227  1.59911  1.42339  1.08231    208 u - - >
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86225  4.86225  1.46634  0.26236  1.09274  0.40842
     74   1.70424  1.79189  0.96158  1.31246    209 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01559  4.86232  4.86232  1.46634  0.26236  1.09861  0.40547
     75   3.17286  0.33819  2.28707  1.94146    210 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.08334  4.15938  2.74349  0.80416  0.59324  1.09861  0.40547
     76   2.28988  0.57182  2.40645  1.41022    213 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02506  4.80404  4.10110  1.46634  0.26236  2.17611  0.12045
     77   2.29060  0.56468  2.14677  1.54461    214 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.02236  4.29063  4.77765  0.95092  0.48839  2.41321  0.09379
     78   2.40491  0.70870  2.14498  1.20273    216 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.01665  4.79690  4.79690  1.46634  0.26236  0.22307  1.60972
     79   2.52857  0.45401  2.17401  1.76360    217 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01561  4.86049  4.86049  1.46634  0.26236  0.97780  0.47182
     80   2.04649  1.10596  2.01557  0.89974    218 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.01953  4.86217  4.45615  1.46634  0.26236  1.10512  0.40222
     81   2.91397  0.36077  2.51659  1.78459    219 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01565  4.85829  4.85829  1.46634  0.26236  0.83959  0.56544
     82   2.95535  0.16534  3.44407  2.68236    220 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.08828  2.56703  4.86232  0.19056  1.75157  1.09861  0.40547
     83   0.41509  1.96662  2.09153  2.57318    222 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.11415  4.58527  2.32610  1.46634  0.26236  1.09861  0.40547
     84   4.16939  0.05591  4.64421  3.53012    223 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02261  4.49373  4.49373  1.46634  0.26236  2.44886  0.09035
     85   4.16939  0.05591  4.64421  3.53012    224 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02261  4.49373  4.49373  1.46634  0.26236  2.44886  0.09035
     86   0.04559  4.40783  4.04316  4.21002    225 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01137  4.48249        *  1.46634  0.26236  0.00000        *
//
INFERNAL1/a [1.1.1 | July 2014]
NAME     bact-Val
ACC      bact-Val-r2-022416
STATES   242
NODES    65
CLEN     76
W        1117
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Thu Feb 25 21:44:39 2016
COM      [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Val-r2-022416.sto
COM      [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     14967
EFFN     14967.000000
CKSUM    1131101639
NULL     0.000  0.000  0.000  0.000 
EFP7GF   -10.1815 0.71887
ECMLC    0.57768    -9.40343     1.23456     1600000      559864  0.002143
ECMGC    0.30856   -30.51719   -17.28529     1600000       23725  0.016860
ECMLI    0.55351    -9.43508     1.56093     1600000      527826  0.002273
ECMGI    0.30339   -29.35558   -15.95708     1600000       23304  0.017164
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     1     1  1117  2381 -18.795 -20.041  -0.785  -1.252                 
    IL     1     1 2     1     4    18    32  1120  2384  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3    18    33  1121  2384  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    1 ]      -    249 - A - -
    MR     3     2 3     5     3    24    43  1120  2383 -19.419  -0.000 -17.736                          2.000 -15.043 -14.320 -14.374 
     D     4     2 3     5     3    15    30  1116  2379 -20.046 -15.223  -0.000                         
    IR     5     5 3     5     3    18    33  1120  2383  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    2 ]      -    248 - C - -
    MR     6     5 3     8     3    24    42  1119  2382 -19.419  -0.000 -17.736                         -16.210  2.000 -17.496 -14.251 
     D     7     5 3     8     3    15    30  1116  2379 -20.046 -15.223  -0.000                         
    IR     8     8 3     8     3    18    33  1119  2382  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    3 ]      -    247 - C - -
    MR     9     8 3    11     3    23    41  1118  2381 -19.419  -0.000 -17.736                         -16.210  2.000 -17.496 -14.251 
     D    10     8 3    11     3    15    30  1116  2379 -20.046  -0.110  -3.772                         
    IR    11    11 3    11     3    17    31  1117  2380  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -    246 - A - -
    MR    12    11 3    14     5    22    40  1117  2380  -5.562  -0.212 -18.614  -3.117 -19.718          1.751 -5.336 -2.094 -1.413 
     D    13    11 3    14     5    14    27  1102  2366 -14.402  -9.757  -9.660 -13.459  -0.004         
    IR    14    14 3    14     5    20    41  1117  2380 -10.047  -0.002 -13.558 -11.726 -12.832          0.000  0.000  0.000  0.000 
                                             [ MATP    5 ]      1    244 G C - -
    MP    15    14 3    19     6    24    41  1116  2379 -19.550 -19.489  -0.022  -6.029 -18.546 -18.941 -14.899 -13.224 -14.863 -0.039 -3.928 -14.928 -3.852 -15.433 -13.053  3.805 -3.194 -0.906 -1.873 -14.512 -13.070 -13.785 
    ML    16    14 3    19     6    17    31  1113  2376  -6.982  -7.328  -2.043  -0.519  -7.178  -4.708 -0.180 -1.113  0.972 -0.529 
    MR    17    14 3    19     6    20    36  1115  2378 -18.021 -16.750  -0.095 -16.728  -3.971 -14.941 -12.588  1.997 -13.147 -6.877 
     D    18    14 3    19     6    14    27  1102  2366 -18.769 -17.468 -13.265 -13.947 -13.964  -0.000 
    IL    19    19 5    19     6    17    31  1115  2378  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    20    20 6    20     5    17    31  1115  2378  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    6 ]      2    243 G C - -
    MP    21    20 6    25     6    23    39  1114  2377 -19.696 -19.636  -0.008 -18.412  -7.450 -19.087 -13.683 -8.138 -13.503 -1.219 -13.121 -10.491  1.234 -12.952 -8.059  3.492  0.786 -5.686 -2.204 -13.356 -11.701 -12.467 
    ML    22    20 6    25     6    20    37  1112  2375 -14.405 -14.751  -8.065  -0.006 -14.601 -12.130 -8.225 -9.997  1.998 -8.985 
    MR    23    20 6    25     6    17    32  1109  2372 -14.054 -12.783  -4.866 -12.761  -0.076  -5.918 -1.678  1.552 -3.557 -0.578 
     D    24    20 6    25     6    14    27  1102  2366 -18.769 -17.468 -13.265 -13.947 -13.964  -0.000 
    IL    25    25 5    25     6    17    31  1113  2376  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    26    26 6    26     5    17    31  1113  2376  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    7 ]      3    242 G C - -
    MP    27    26 6    31     6    24    38  1112  2375 -19.688 -19.628  -0.000 -18.404 -18.684 -19.079 -8.425 -12.291 -13.471  2.009 -14.600 -10.694 -0.083 -14.161 -13.909  3.149 -14.155  0.615 -0.920 -13.325 -3.394 -12.436 
    ML    28    26 6    31     6    20    36  1111  2374 -14.402 -14.748  -0.003  -9.157 -14.598 -12.127  1.998 -9.695 -8.931 -9.040 
    MR    29    26 6    31     6    18    32  1108  2371 -14.829 -13.558  -9.466 -13.536  -0.003 -11.750 -3.349  1.906 -2.770 -7.142 
     D    30    26 6    31     6    14    27  1102  2366 -18.775 -17.473 -13.270 -13.952 -13.970  -0.000 
    IL    31    31 5    31     6    17    31  1111  2374  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    32    32 6    32     5    17    31  1111  2374  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP    8 ]      4    241 c g - -
    MP    33    32 6    37     6    23    36  1110  2373 -19.708  -6.554  -0.015 -18.424 -18.704 -19.099 -10.786 -13.705 -11.118  0.678 -10.909 -14.848  2.866 -10.649 -6.294  1.103 -14.376 -1.294  2.072 -14.187 -1.586 -11.125 
    ML    34    32 6    37     6    16    31  1108  2371  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    35    32 6    37     6    17    31  1107  2370 -14.829 -13.558  -9.466 -13.536  -0.058  -4.728  1.050 -8.456  0.944 -8.352 
     D    36    32 6    37     6    14    27  1102  2366 -18.775 -17.473 -13.270 -13.952 -13.970  -0.000 
    IL    37    37 5    37     6    17    31  1109  2372  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    38    38 6    38     5    20    35  1109  2372  -9.044  -0.004 -12.555 -10.723 -11.829          0.000  0.000  0.000  0.000 
                                             [ MATP    9 ]      5    239 g c - -
    MP    39    38 6    43     6    21    34  1108  2371 -19.708 -19.648  -0.001 -18.424 -11.232 -19.099 -11.445 -2.312 -13.540  0.667 -6.677 -11.725  1.858 -0.005 -6.383  2.863 -6.348 -0.478  0.568 -8.981 -3.729 -12.466 
    ML    40    38 6    43     6    16    30  1106  2369  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 6    43     6    18    31  1106  2369 -14.774 -13.503  -1.090 -13.481  -0.917 -11.694 -8.492  1.919 -8.900 -2.223 
     D    42    38 6    43     6    14    27  1102  2366 -18.796 -17.494  -1.911 -13.973 -13.991  -0.446 
    IL    43    43 5    43     6    17    31  1107  2370  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5    17    31  1107  2370  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   10 ]      6    238 c g - -
    MP    45    44 6    49     6    19    32  1106  2369  -3.947 -19.668  -0.097 -18.444 -18.724 -19.119 -14.019 -7.036 -14.016  1.683 -11.183 -14.854  2.156 -8.042 -13.883  1.654 -14.393 -1.212  1.776 -4.621  0.320 -5.260 
    ML    46    44 6    49     6    16    30  1104  2368  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6    16    29  1103  2367 -13.951 -12.680  -7.656 -12.658  -0.008 -10.871 -2.391 -2.013 -6.248  1.827 
     D    48    44 6    49     6    14    27  1101  2364 -18.350 -17.048  -9.571 -13.528 -13.545  -0.002 
    IL    49    49 5    49     6    16    29  1104  2368 -12.550 -12.812  -0.421 -14.468 -15.244  -1.984  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5    17    30  1105  2368  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   11 ]      8    237 U A - -
    MP    51    50 6    55     4    17    30  1104  2367  -6.322 -19.142  -0.018 -17.556                 -13.753 -12.411 -13.580  1.123 -14.592 -14.192 -2.108 -14.219 -6.433  1.723 -10.436  0.316  3.054 -0.480 -6.600 -12.531 
    ML    52    50 6    55     4    16    29  1103  2366  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     4    15    28  1102  2366 -11.972 -11.001  -1.247  -0.791                  1.826 -2.020 -5.982 -2.373 
     D    54    50 6    55     4    14    27  1101  2364 -14.531 -14.212  -4.694  -0.057                 
    IL    55    55 5    55     4    16    29  1103  2366  -9.487 -10.170  -0.003 -12.655                  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     3    16    29  1104  2367  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   12 ]     10      - U - - -
    ML    57    56 6    59     3    15    28  1102  2365 -19.850  -0.000 -18.504                         -17.124 -7.029 -18.689  1.997 
     D    58    56 6    59     3    14    27  1101  2364 -16.727  -0.001 -11.119                         
    IL    59    59 3    59     3    15    28  1103  2366  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   13 ]     11      - A - - -
    ML    60    59 3    62     2    14    27  1101  2364 -20.567  -0.000                                  1.939 -15.403 -2.690 -6.663 
     D    61    59 3    62     2    13    26  1100  2363  -8.445  -0.004                                 
    IL    62    62 3    62     2    14    27  1101  2365  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    14 ]      -      - - - - -
     B    63    62 3   133    64    13    26  1100  2363                                                 
                                             [ BEGR   46 ]      -      - - - - -
     S    64    63 1    65     3     0     4  1062  2325 -19.911  -0.161  -3.243                         
    IL    65    65 2    65     3     1     6  1063  2326  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]     98      - a - - -
    ML    66    65 2    68     3     1     6  1058  2321 -19.750  -0.074  -4.325                          0.918 -2.626  0.843 -2.701 
     D    67    65 2    68     3     0     3  1088  2351 -18.087 -13.600  -0.000                         
    IL    68    68 3    68     3     1     6  1060  2323  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]     99      - G - - -
    ML    69    68 3    71     3     1     6  1055  2318  -3.494  -0.176  -5.269                         -1.048 -3.816  1.625 -1.471 
     D    70    68 3    71     3     0     3  1088  2351  -1.815  -6.297  -0.508                         
    IL    71    71 3    71     3     1     5  1076  2339  -0.352  -3.023  -3.421                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]    121      - G - - -
    ML    72    71 3    74     3     2     9  1049  2313 -19.627  -0.000 -18.281                         -4.263 -6.716  1.935 -3.116 
     D    73    71 3    74     3     0     3  1093  2356 -18.845 -14.358  -0.000                         
    IL    74    74 3    74     3     1     6  1055  2318  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]    122      - U - - -
    ML    75    74 3    77     3     2     8  1048  2312 -19.627  -0.000 -18.281                         -1.107 -3.508 -2.885  1.728 
     D    76    74 3    77     3     0     3  1093  2356 -18.845  -1.290  -0.758                         
    IL    77    77 3    77     3     1     5  1058  2321  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   51 ]    123      - C - - -
    ML    78    77 3    80     5     1     7  1047  2311 -18.683  -0.000 -18.498 -18.710 -19.602         -1.970  1.769 -3.155 -2.155 
     D    79    77 3    80     5     0     3  1112  2376 -16.043 -11.887 -15.304  -0.001 -13.592         
    IL    80    80 3    80     5     1     2  1052  2315  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   52 ]    124    236 g c - -
    MP    81    80 3    85     6     2     6  1046  2310 -19.611 -19.550  -0.001 -11.389 -18.606 -19.001 -15.037 -3.566 -15.046  2.428 -16.555 -16.304 -1.472 -15.399 -14.993  2.766 -15.480  1.717 -3.572 -15.381 -13.688 -13.830 
    ML    82    80 3    85     6     1     1  1050  2314  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    83    80 3    85     6     1     4  1112  2376 -17.939 -16.668 -12.577 -16.646  -0.000 -14.860 -13.967 -12.579 -15.554  2.000 
     D    84    80 3    85     6     0     0  1081  2345  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    85    85 5    85     6     1     1  1053  2316  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    86    86 6    86     5     1     2  1055  2318  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   53 ]    125    235 c g - -
    MP    87    86 6    91     6     2     7  1044  2308 -19.610 -19.549  -0.000 -18.326 -18.606 -19.001 -13.896 -1.744 -13.893 -0.315 -8.991 -9.207  2.590 -13.431 -11.329  1.179 -9.492  1.969  0.595 -11.041  0.199 -5.047 
    ML    88    86 6    91     6     1     2  1045  2308  -9.275  -9.621  -0.110  -4.029  -9.471  -7.000 -3.666  1.898 -4.404 -2.766 
    MR    89    86 6    91     6     1     4  1111  2375 -17.939 -16.668 -12.577 -16.646  -0.000 -14.860 -11.195 -12.948  2.000 -11.939 
     D    90    86 6    91     6     0     0  1084  2347  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    91    91 5    91     6     1     1  1052  2315  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    92    92 6    92     5     1     1  1054  2317  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   54 ]    126    234 u a - -
    MP    93    92 6    97     6     2     7  1042  2306 -19.611 -19.550  -0.000 -15.625 -18.606 -19.001 -13.882 -6.763 -13.866  1.040 -12.842 -5.085  2.031 -13.461 -13.769  1.688 -14.264  0.358  2.208 -14.015 -0.553 -6.301 
    ML    94    92 6    97     6     1     1  1054  2318  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    95    92 6    97     6     1     3  1110  2374 -17.939 -16.668 -12.577 -16.646  -0.000 -14.860  2.000 -12.600 -11.851 -11.933 
     D    96    92 6    97     6     0     0  1087  2350  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    97    97 5    97     6     1     1  1051  2314  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    98    98 6    98     5     1     1  1052  2315  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   55 ]    127    233 G C - -
    MP    99    98 6   103     6     2     5  1040  2304 -19.611 -19.550  -0.000 -18.326 -18.606 -19.001 -17.018 -8.963 -18.071  1.063 -18.881 -15.555 -4.033 -17.960 -11.110  3.780 -15.776 -8.496 -3.198 -15.935 -15.773 -16.783 
    ML   100    98 6   103     6     1     1  1055  2318  -6.654  -7.000  -1.714  -0.688  -6.850  -4.379  0.081 -0.800  0.616 -0.260 
    MR   101    98 6   103     6     1     2  1109  2373 -17.939 -16.668 -12.577 -16.646  -0.000 -14.860 -13.394  2.000 -14.359 -11.690 
     D   102    98 6   103     6     0     0  1091  2354  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   103   103 5   103     6     1     1  1049  2313  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   104   104 6   104     5     1     1  1051  2314  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]    128    232 G C - -
    MP   105   104 6   109     4     2     3  1038  2302 -18.841  -5.042  -0.044 -17.462                 -17.558 -8.768 -19.960 -3.277 -19.182 -15.325 -13.470 -19.382 -5.232  3.955 -4.866 -4.720 -13.836 -1.812 -15.924 -19.093 
    ML   106   104 6   109     4     1     1  1055  2319  -4.069  -4.252  -0.393  -2.981                  0.081 -0.800  0.616 -0.260 
    MR   107   104 6   109     4     1     1  1108  2372 -15.965 -14.994 -12.861  -0.000                 -13.394  2.000 -14.359 -11.690 
     D   108   104 6   109     4     0     0  1095  2358  -4.568  -4.250  -2.265  -0.520                 
    IL   109   109 5   109     4     1     1  1064  2327  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   110   110 6   110     3     1     1  1097  2361  -0.493  -3.667  -2.246                          0.000  0.000  0.000  0.000 
                                             [ MATL   57 ]    129      - U - - -
    ML   111   110 6   113     3     1     1  1033  2296 -19.717  -0.586  -1.583                         -5.719 -12.892 -3.423  1.959 
     D   112   110 6   113     3     0     0  1107  2371 -18.335 -13.848  -0.000                         
    IL   113   113 3   113     3     1     1   944  2207  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   58 ]    130      - U - - -
    ML   114   113 3   116     3     1     3   202  1466 -19.132  -0.000 -17.786                         -16.188 -14.942 -4.367  1.982 
     D   115   113 3   116     3     0     0  1107  2371  -0.070 -15.582  -4.396                         
    IL   116   116 3   116     3     1     4  1111  2374  -0.021  -6.110 -22.083                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]    223      - C - - -
    ML   117   116 3   119     3     1     2     9    28 -19.882  -0.000 -18.536                         -4.390  1.979 -11.633 -6.614 
     D   118   116 3   119     3     0     0    10    29 -15.673 -11.187  -0.001                         
    IL   119   119 3   119     3     1     1    21    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]    224      - G - - -
    ML   120   119 3   122     3     1     1     8    26 -19.882  -0.000 -18.536                          0.372 -11.742  1.436 -11.722 
     D   121   119 3   122     3     0     0     9    27 -15.673  -0.001 -10.065                         
    IL   122   122 3   122     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]    225      - A - - -
    ML   123   122 3   125     3     1     1     6    25 -19.911  -0.000 -14.874                          1.991 -11.816 -6.537 -6.102 
     D   124   122 3   125     3     0     0    14    33  -6.174  -1.687  -0.566                         
    IL   125   125 3   125     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]    226      - g - - -
    ML   126   125 3   128     3     1     1     5    23 -19.911  -0.000 -18.565                          0.067 -4.528  0.831  0.176 
     D   127   125 3   128     3     0     0    13    31  -7.259  -0.567  -1.651                         
    IL   128   128 3   128     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]    227      - U - - -
    ML   129   128 3   131     2     1     1     1     1       *   0.000                                 -2.958  0.780 -2.734  1.002 
     D   130   128 3   131     2     0     0     0     0       *   0.000                                 
    IL   131   131 3   131     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   132   131 3    -1     0     0     0     0     0                                                 
                                             [ BEGL   15 ]      -      - - - - -
     S   133    63 1   134     1     3    13   306   661   0.000                                         
                                             [ BIF    16 ]      -      - - - - -
     B   134   133 1   135   185     3    13   306   661                                                 
                                             [ BEGL   17 ]      -      - - - - -
     S   135   134 1   136     4     0     5    30    47  -0.001 -17.902 -10.143 -17.949                 
                                             [ MATP   18 ]     12     35 G C - -
    MP   136   135 1   140     6     2     6    30    47  -7.435  -7.098  -0.023 -11.293  -8.663 -19.161 -17.313 -7.081 -18.572 -1.138 -19.138 -15.653 -13.627 -18.398 -15.681  3.845 -15.925  0.081 -3.232 -16.062 -15.991 -17.311 
    ML   137   135 1   140     6     1     2    28    46  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   138   135 1   140     6     1     2    26    44 -11.114  -9.843  -5.751  -9.821  -0.037  -8.034 -5.249  1.966 -5.747 -4.348 
     D   139   135 1   140     6     0     0    26    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   140   140 5   140     6     1     5    29    46  -9.117  -9.380  -0.006 -11.035 -11.811 -11.472  0.000  0.000  0.000  0.000 
    IR   141   141 6   141     5     1     5    29    46  -8.568  -0.006 -12.079 -10.247 -11.353          0.000  0.000  0.000  0.000 
                                             [ MATP   19 ]     14     33 C G - -
    MP   142   141 6   146     6     2     9    28    45 -19.766 -19.706  -0.000 -18.482 -15.761 -19.157 -16.825 -17.107 -16.142 -2.512 -2.244 -4.826  3.915 -15.408 -16.246 -2.145 -16.366 -15.511 -1.921 -16.659 -8.483 -15.048 
    ML   143   141 6   146     6     1     1    25    42  -9.503  -9.849  -4.563  -4.258  -9.699  -0.149 -4.005  1.919 -4.692 -3.083 
    MR   144   141 6   146     6     1     1    25    43 -12.979 -11.708  -7.617 -11.686  -1.902  -0.461 -1.800 -1.813 -1.921  1.662 
     D   145   141 6   146     6     0     0    24    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   146   146 5   146     6     1     2    28    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   147   147 6   147     5     1     2    28    45  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   20 ]     15     32 U A - -
    MP   148   147 6   152     6     2     7    26    43 -19.766 -19.706  -0.000 -18.482 -18.762 -19.157 -16.794 -5.003 -16.140 -4.852 -3.657 -16.314 -2.539 -15.420 -16.228 -1.370 -16.363 -15.168  3.920 -2.674 -12.224 -15.037 
    ML   149   147 6   152     6     1     2    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   150   147 6   152     6     1     3    25    43 -11.138  -9.867  -4.843  -0.108  -4.979  -8.059  0.159 -0.147 -0.164  0.121 
     D   151   147 6   152     6     0     0    22    40 -15.362 -14.060  -9.857 -10.539 -10.557  -0.004 
    IL   152   152 5   152     6     1     2    26    44  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   153   153 6   153     5     1     2    26    44  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   21 ]     16     31 C G - -
    MP   154   153 6   158     4     2     5    24    41 -18.996 -19.203  -0.000 -17.617                 -1.940 -17.107 -7.227 -13.344 -14.493 -16.287  3.896 -4.766 -16.246 -13.316 -16.366 -15.512 -7.000 -16.659 -0.314 -15.048 
    ML   155   153 6   158     4     1     2    24    42  -7.676  -7.858  -0.029  -6.588                 -5.249  1.966 -5.747 -4.348 
    MR   156   153 6   158     4     1     1    25    44  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   157   153 6   158     4     0     0    22    40 -10.785 -10.466  -0.230  -2.777                 
    IL   158   158 5   158     4     1     2    27    46  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   159   159 6   159     3     1     2    26    45  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   22 ]     17      - A - - -
    ML   160   159 6   162     3     1     3    22    39 -19.910  -0.000 -18.564                          1.956 -6.406 -3.990 -4.434 
     D   161   159 6   162     3     0     0    21    39 -10.123  -0.066  -4.514                         
    IL   162   162 3   162     3     1     1    25    44  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   23 ]     18      - G - - -
    ML   163   162 3   165     3     1     2    21    38 -19.911  -0.000 -18.565                         -1.338 -3.128  1.749 -2.958 
     D   164   162 3   165     3     0     0    20    39  -6.174  -1.687  -0.566                         
    IL   165   165 3   165     3     1     1    24    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   24 ]     19      - U - - -
    ML   166   165 3   168     3     1     1    20    37 -19.911  -0.295  -2.433                         -1.973  0.339 -4.275  1.280 
     D   167   165 3   168     3     0     0    19    38  -6.174  -1.687  -0.566                         
    IL   168   168 3   168     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   25 ]     20      - U - - -
    ML   169   168 3   171     3     1     1    19    37  -3.257  -0.159 -18.269                         -2.660 -2.282 -3.393  1.824 
     D   170   168 3   171     3     0     0    12    27 -18.897  -0.000 -13.289                         
    IL   171   171 3   171     3     1     1    20    38  -1.533  -0.612 -14.364                          0.000  0.000  0.000  0.000 
                                             [ MATL   26 ]     25      - G - - -
    ML   172   171 3   174     3     1     1    12    27 -19.911  -0.005  -8.194                         -3.378 -16.118  1.939 -3.871 
     D   173   171 3   174     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   174   174 3   174     3     1     1    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   27 ]     26      - G - - -
    ML   175   174 3   177     3     1     1    11    25 -19.906  -0.000 -18.560                         -3.874 -16.203  1.975 -15.175 
     D   176   174 3   177     3     0     0    10    29 -13.146  -8.659  -0.004                         
    IL   177   177 3   177     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   28 ]     27      - U - - -
    ML   178   177 3   180     3     1     1    10    20  -1.491  -0.639  -8.854                         -1.302 -2.290  0.443  1.022 
     D   179   177 3   180     3     0     0     5    14 -13.146  -8.659  -0.004                         
    IL   180   180 3   180     3     1     1    10    19  -2.825  -0.219 -16.027                          0.000  0.000  0.000  0.000 
                                             [ MATL   29 ]     30      - A - - -
    ML   181   180 3   183     2     1     1     1     1       *   0.000                                  1.939 -6.504 -2.801 -6.450 
     D   182   180 3   183     2     0     0     0     0       *   0.000                                 
    IL   183   183 3   183     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    30 ]      -      - - - - -
     E   184   183 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   31 ]      -      - - - - -
     S   185   134 1   186     3     0     0   290   644 -19.911  -0.000 -11.926                         
    IL   186   186 2   186     3     1     1   290   644  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]     36      - A - - -
    ML   187   186 2   189     5     1     3   290   644 -18.843  -0.161  -3.243 -18.871 -19.763          1.154 -7.273  0.676 -2.552 
     D   188   186 2   189     5     0     0   254   609  -7.597  -3.441  -6.859  -5.234  -0.205         
    IL   189   189 3   189     5     1     1   286   641  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   33 ]     37     97 C G - -
    MP   190   189 3   194     6     2     3   275   630 -19.610 -19.550  -0.019 -18.326  -6.262 -19.001 -6.504 -13.607 -10.132 -3.875 -8.325 -14.751  3.188 -8.320 -5.021 -1.947 -13.219 -0.387  2.413 -7.190 -1.274 -10.845 
    ML   191   189 3   194     6     1     1   321   675 -17.404 -17.750 -12.464  -0.000 -17.600 -15.129 -13.967 -12.579 -15.554  2.000 
    MR   192   189 3   194     6     1     1   264   619  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   193   189 3   194     6     0     0   239   593 -12.046 -10.745  -6.542  -7.224  -7.241  -0.036 
    IL   194   194 5   194     6     1     1   282   637  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   195   195 6   195     5     1     1   277   631  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   34 ]     38     96 C G - -
    MP   196   195 6   200     6     2     2   273   628 -19.591 -19.531  -0.018 -18.307 -18.587  -6.347 -4.807 -13.673 -13.960  1.141 -11.349 -14.789  3.094 -13.474 -13.821 -1.848 -8.240 -9.528  2.295 -14.147 -4.995 -12.541 
    ML   197   195 6   200     6     1     1   320   674 -17.404 -17.750 -12.464  -0.000 -17.600 -15.129  2.000 -12.600 -11.851 -11.933 
    MR   198   195 6   200     6     1     1   161   516 -14.765 -13.494  -9.403 -13.473  -0.003 -11.686 -8.055 -9.828  1.997 -8.816 
     D   199   195 6   200     6     0     0   225   580 -12.046 -10.745  -6.542  -7.224  -7.241  -0.036 
    IL   200   200 5   200     6     1     1   281   636  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   201   201 6   201     5     1     1   275   629  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   35 ]     39     95 u a - -
    MP   202   201 6   206     6     2     2   272   626  -3.620 -19.513  -0.122 -18.289 -18.569 -18.964 -4.789 -13.584 -9.747  1.700 -12.752 -14.727  2.250 -13.404 -13.743  1.051 -14.256 -6.752  2.550 -14.068 -5.793 -12.463 
    ML   203   201 6   206     6     1     1   319   673  -0.001 -17.750 -12.464 -12.159 -17.600 -15.129 -11.195 -12.948  2.000 -11.939 
    MR   204   201 6   206     6     1     1   122   476 -14.765 -13.494  -9.403 -13.473  -0.003 -11.686 -9.390  1.998 -9.963 -8.207 
     D   205   201 6   206     6     0     0    87   442 -17.305 -16.004 -11.801  -0.038 -12.500  -5.295 
    IL   206   206 5   206     6     1     1   318   672  -0.075  -5.620 -16.521 -20.259 -21.035  -5.046  0.000  0.000  0.000  0.000 
    IR   207   207 6   207     5     1     1    97   207 -11.831  -0.001 -15.342 -13.510 -14.616          0.000  0.000  0.000  0.000 
                                             [ MATP   36 ]     69     93 C G - -
    MP   208   207 6   212     6     2     2    96   206 -19.574  -2.863  -0.244 -18.289 -18.569  -5.790 -13.891 -13.404 -13.861 -1.617 -12.894 -11.725  3.204 -13.496 -5.828  2.349 -11.711 -0.495 -1.082 -13.995 -2.596 -12.491 
    ML   209   207 6   212     6     1     1    49   158 -14.126 -14.472  -0.004  -8.881 -14.322 -11.851  1.998 -9.437 -8.674 -8.786 
    MR   210   207 6   212     6     1     1    52   162 -14.765 -13.494  -9.403 -13.473  -0.003 -11.686 -8.055 -9.828  1.997 -8.816 
     D   211   207 6   212     6     0     0    27   137 -20.555 -19.253 -15.050 -15.732 -15.750  -0.000 
    IL   212   212 5   212     6     1     1    97   206  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   213   213 6   213     5     1     1   106   216  -0.242  -2.695 -18.793 -16.961 -18.066          0.000  0.000  0.000  0.000 
                                             [ MATP   37 ]     70     83 C G - -
    MP   214   213 6   218     4     2     2    28    50 -18.795 -19.002  -0.000 -17.416                 -13.968 -1.592 -13.957 -1.394 -12.810 -11.154  3.174 -13.470 -13.820  1.690 -14.325 -11.247  1.305 -14.146 -0.825 -9.938 
    ML   215   213 6   218     4     1     1    28    50  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   216   213 6   218     4     1     1    23    46 -12.791 -11.820  -9.687  -0.002                 -8.055 -9.828  1.997 -8.816 
     D   217   213 6   218     4     0     0    22    45 -16.177 -15.858 -13.874  -0.000                 
    IL   218   218 5   218     4     1     1    29    52  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   219   219 6   219     3     1     1    28    51  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   38 ]     71      - u - - -
    ML   220   219 6   222     3     1     1    26    48 -19.705  -0.000 -18.359                         -1.222  0.571 -1.919  0.865 
     D   221   219 6   222     3     0     0    22    45 -18.422  -3.514  -0.132                         
    IL   222   222 3   222     3     1     1    27    50  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   39 ]     72      - U - - -
    ML   223   222 3   225     3     1     1    25    47 -19.724  -0.000 -18.378                         -10.097 -3.514 -10.203  1.967 
     D   224   222 3   225     3     0     0    20    43 -18.290 -13.803  -0.000                         
    IL   225   225 3   225     3     1     1    26    49  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   40 ]     73      - u - - -
    ML   226   225 3   228     3     1     1    24    46 -19.724  -0.000 -18.378                         -0.032 -0.502 -0.024  0.414 
     D   227   225 3   228     3     0     0    20    43 -18.290  -2.948  -0.200                         
    IL   228   228 3   228     3     1     1    25    48  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   41 ]     74      - u - - -
    ML   229   228 3   231     3     1     1    23    45  -2.205  -0.353 -18.403                          0.085 -0.244 -0.388  0.412 
     D   230   228 3   231     3     0     0     8    31 -18.090 -13.603  -0.000                         
    IL   231   231 3   231     3     1     1    23    46  -1.167  -0.851 -15.789                          0.000  0.000  0.000  0.000 
                                             [ MATL   42 ]     80      - c - - -
    ML   232   231 3   234     3     1     1     7    25 -19.749  -0.000 -18.403                          0.117  0.358 -0.546 -0.075 
     D   233   231 3   234     3     0     0     6    25 -18.090 -13.603  -0.000                         
    IL   234   234 3   234     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   43 ]     81      - A - - -
    ML   235   234 3   237     3     1     1     5    23 -19.749  -0.000 -18.403                          1.956 -15.281 -3.835 -4.325 
     D   236   234 3   237     3     0     0     5    23 -18.090 -13.603  -0.000                         
    IL   237   237 3   237     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   44 ]     82      - A - - -
    ML   238   237 3   240     2     1     1     1     1       *   0.000                                  1.143 -0.633 -3.966  0.114 
     D   239   237 3   240     2     0     0     0     0       *   0.000                                 
    IL   240   240 3   240     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    45 ]      -      - - - - -
     E   241   240 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1.1 | July 2014]
NAME  bact-Val
ACC   bact-Val-r2-022416
LENG  76
MAXL  1091
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Thu Feb 25 21:44:39 2016
COM   [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Val-r2-022416.sto
NSEQ  14967
EFFN  10.566065
CKSUM 1131101639
STATS LOCAL MSV       -8.4550  0.71887
STATS LOCAL VITERBI   -9.4115  0.71887
STATS LOCAL FORWARD   -3.5989  0.71887
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45188  1.38039  1.27531  1.44796
          1.38629  1.38629  1.38629  1.38629
          0.10976  4.96414  2.33334  1.46634  0.26236  0.00000        *
      1   1.94049  2.76674  0.33228  2.57425      1 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01547  4.86984  4.86984  1.46634  0.26236  0.13457  2.07222
      2   2.13931  2.02354  0.39488  2.57287      2 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01889  4.96646  4.44441  1.46634  0.26236  1.09861  0.40547
      3   1.46068  2.44148  0.52195  2.43581      3 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.01410  4.96187  4.96187  1.46634  0.26236  1.30440  0.31654
      4   2.05356  0.94425  1.70254  1.20221      4 c - - (
          1.38629  1.38629  1.38629  1.38629
          0.01410  4.96187  4.96187  1.46634  0.26236  1.30440  0.31654
      5   1.79822  1.44181  0.84845  1.77295      5 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.01445  4.96187  4.91311  1.46634  0.26236  0.84331  0.56261
      6   1.67027  1.25295  1.48657  1.20398      6 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.05648  3.03655  4.97369  0.26686  1.45148  1.14729  0.38199
      7   1.74814  2.02980  1.17090  0.95594      8 u - - (
          1.38629  1.38629  1.38629  1.38629
          0.03825  4.05461  3.90275  0.66741  0.71957  1.10634  0.40162
      8   4.27191  3.94728  4.81738  0.04223     10 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01408  4.96350  4.96350  1.46634  0.26236  0.50737  0.92150
      9   0.07910  4.26057  3.10462  4.06883     11 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01434  4.99917  4.89397  1.46634  0.26236  1.09861  0.40547
     10   2.83899  4.13236  0.10180  3.80489     12 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.02073  4.45080  4.72758  0.91818  0.50957  1.13492  0.38779
     11   4.10724  0.08262  3.90450  3.15361     14 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01397  4.99632  4.94567  1.46634  0.26236  1.23023  0.34563
     12   4.63901  3.75442  4.28210  0.04803     15 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.01362  4.99597  4.99597  1.46634  0.26236  1.13831  0.38619
     13   3.58080  0.14624  3.86769  2.43849     16 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.01361  4.99673  4.99673  1.46634  0.26236  0.94141  0.49443
     14   0.07729  3.96061  3.50485  3.67781     17 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99884  4.99884  1.46634  0.26236  1.06637  0.42199
     15   2.05551  2.96081  0.28340  2.70346     18 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99917  4.99917  1.46634  0.26236  1.09861  0.40547
     16   2.19760  1.22650  3.00833  0.60470     19 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.18782  4.99917  1.80491  1.46634  0.26236  1.09861  0.40547
     17   2.61714  2.51770  3.12177  0.22032     20 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.10784  2.36214  4.82748  0.51635  0.90806  0.07881  2.57992
     18   3.23402  4.52039  0.07908  3.65928     25 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01653  4.99917  4.64087  1.46634  0.26236  1.09861  0.40547
     19   3.66703  5.17786  0.04125  4.68604     26 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01362  4.99626  4.99626  1.46634  0.26236  1.23282  0.34456
     20   1.71524  2.22267  1.27365  0.83944     27 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.38293  1.17266  4.75596  0.18737  1.76688  1.23282  0.34456
     21   0.08748  4.01496  3.08725  3.90724     30 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01689  4.99442  4.60781  1.46634  0.26236  0.77691  0.61586
     22   2.93732  4.02056  0.09922  3.75045     31 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01362  4.99598  4.99598  1.46634  0.26236  1.13952  0.38562
     23   0.05565  4.29209  3.58539  4.36380     32 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.01361  4.99673  4.99673  1.46634  0.26236  0.94141  0.49443
     24   3.21180  3.94934  0.08309  3.90284     33 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.01990  4.34584  4.99884  0.83927  0.56568  1.06637  0.42199
     25   3.93125  0.16501  3.93822  2.18028     35 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01380  4.99917  4.96755  1.46634  0.26236  1.09861  0.40547
     26   0.66233  3.22551  1.01576  2.49512     36 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99895  4.99895  1.46634  0.26236  1.10927  0.40018
     27   2.49357  0.86259  2.06143  0.99955     37 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.02370  4.99895  4.09379  1.46634  0.26236  1.10927  0.40018
     28   1.68142  0.89275  2.25768  1.20474     38 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.02322  4.98897  4.12628  1.46634  0.26236  1.50507  0.25103
     29   1.73204  1.22598  1.57587  1.13078     39 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.18283  1.83125  4.97959  2.93237  0.05474  0.90784  0.51650
     30   2.29773  0.86689  1.16486  1.78803     69 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.12562  4.98897  2.19608  1.46634  0.26236  1.50507  0.25103
     31   2.24384  0.83866  1.58206  1.36215     70 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01533  4.87868  4.87868  1.46634  0.26236  2.98733  0.05174
     32   1.75864  1.13418  2.27699  0.90772     71 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01533  4.87868  4.87868  1.46634  0.26236  2.08217  0.13314
     33   3.64064  3.09069  4.14896  0.09155     72 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01516  4.88982  4.88982  1.46634  0.26236  2.91019  0.05600
     34   1.30014  1.68493  1.51810  1.13035     73 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.01516  4.88982  4.88982  1.46634  0.26236  1.81501  0.17773
     35   1.26301  1.58426  1.66925  1.12791     74 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.21867  1.66601  4.90467  0.62267  0.76897  2.79549  0.06303
     36   1.25840  1.32121  1.73721  1.29804     80 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90468  4.90468  1.46634  0.26236  2.79549  0.06303
     37   0.07472  4.08956  3.48162  3.70953     81 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90468  4.90468  1.46634  0.26236  2.79549  0.06303
     38   0.76919  1.74104  2.47866  1.28223     82 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.03002  4.90467  3.80950  1.46634  0.26236  2.79549  0.06303
     39   1.57865  1.62608  0.73417  2.14435     83 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.14992  2.10871  4.02712  1.85583  0.16998  1.81501  0.17773
     40   2.01937  1.30371  0.78649  1.96397     93 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.08562  2.59599  4.89447  0.18998  1.75432  2.87583  0.05802
     41   1.19061  1.85587  1.08518  1.60045     95 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01509  4.89447  4.89447  1.46634  0.26236  2.01314  0.14337
     42   1.26481  2.40867  0.76610  1.81430     96 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90468  4.90468  1.46634  0.26236  2.79549  0.06303
     43   1.22120  2.39477  0.70926  2.10438     97 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90468  4.90468  1.46634  0.26236  2.76386  0.06512
     44   0.87609  2.51922  0.93182  2.21428     98 a - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01674  4.90491  4.68964  1.46634  0.26236  2.79352  0.06316
     45   1.88168  2.91005  0.38461  2.18501     99 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.15811  2.13573  3.57235  1.34792  0.30081  2.59284  0.07775
     46   3.17732  4.07672  0.10135  3.27759    121 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.06600  4.88406  2.87705  1.46634  0.26236  2.95087  0.05371
     47   2.04425  2.64900  2.83404  0.29972    122 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01604  4.83410  4.83410  1.46634  0.26236  0.91633  0.51080
     48   2.46144  0.28018  3.18002  2.14168    123 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90491  4.90491  1.46634  0.26236  2.79352  0.06316
     49   1.28330  2.73094  0.52450  2.72007    124 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90491  4.90491  1.46634  0.26236  2.79352  0.06316
     50   2.00660  1.13881  1.18763  1.42540    125 c - - <
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90491  4.90491  1.46634  0.26236  2.79352  0.06316
     51   1.85499  1.29488  1.36111  1.16079    126 u - - <
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90491  4.90491  1.46634  0.26236  2.79352  0.06316
     52   2.02722  3.61613  0.21187  3.43132    127 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.01493  4.90491  4.90491  1.46634  0.26236  2.79352  0.06316
     53   3.13797  4.06717  0.09324  3.55693    128 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.03392  4.90491  3.65181  1.46634  0.26236  2.79352  0.06316
     54   3.21426  3.20575  3.31789  0.12437    129 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.01522  4.88621  4.88621  1.46634  0.26236  0.27302  1.43162
     55   3.09916  3.02074  3.39029  0.13645    130 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.44052  1.05143  4.98213  4.21495  0.01488  1.70496  0.20062
     56   3.88213  0.05513  4.64862  3.75247    223 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.01381  4.98216  4.98216  1.46634  0.26236  1.70496  0.20062
     57   1.15487  3.82808  0.45596  3.52986    224 G - - _
          1.38629  1.38629  1.38629  1.38629
          0.01381  4.98216  4.98216  1.46634  0.26236  0.45186  1.01182
     58   0.03215  4.82042  4.36510  4.52252    225 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.01361  4.99917  4.99530  1.46634  0.26236  1.09861  0.40547
     59   1.29974  2.53706  0.98617  1.28990    226 g - - _
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99915  4.99915  1.46634  0.26236  1.09603  0.40676
     60   2.34583  0.95105  2.74056  0.79106    227 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.03730  3.51129  4.99728  1.27804  0.32654  1.09861  0.40547
     61   3.98389  0.10672  3.82699  2.79958    232 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99916  4.99916  1.46634  0.26236  1.09924  0.40515
     62   3.54824  0.23862  3.43424  1.88877    233 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99916  4.99916  1.46634  0.26236  1.09735  0.40610
     63   1.27191  1.62450  1.16249  1.56072    234 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01386  4.99917  4.95822  1.46634  0.26236  1.09861  0.40547
     64   1.75759  1.70911  0.92072  1.39320    235 g - - >
          1.38629  1.38629  1.38629  1.38629
          0.01358  4.99889  4.99889  1.46634  0.26236  1.07150  0.41930
     65   2.90747  0.81101  2.57091  0.85681    236 c - - >
          1.38629  1.38629  1.38629  1.38629
          0.02837  4.97986  3.85863  1.46634  0.26236  1.09861  0.40547
     66   1.08741  1.30522  1.84851  1.45104    237 a - - )
          1.38629  1.38629  1.38629  1.38629
          0.01405  4.96551  4.96551  1.46634  0.26236  0.52088  0.90139
     67   1.47109  1.62794  1.04964  1.49644    238 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.01405  4.97229  4.95790  1.46634  0.26236  1.11772  0.39605
     68   1.94963  0.94713  1.45094  1.44618    239 c - - )
          1.38629  1.38629  1.38629  1.38629
          0.02303  4.14507  4.97219  0.72273  0.66442  1.06618  0.42208
     69   1.34849  1.88184  0.85155  1.82446    241 g - - )
          1.38629  1.38629  1.38629  1.38629
          0.02567  4.97259  3.99442  1.46634  0.26236  1.10343  0.40306
     70   2.63913  0.65993  2.27204  1.17574    242 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01411  4.96100  4.96100  1.46634  0.26236  1.52764  0.24468
     71   2.73627  0.53227  1.62816  1.88632    243 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.01411  4.96110  4.96110  1.46634  0.26236  0.56076  0.84578
     72   2.71607  0.40397  2.59038  1.65440    244 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.03231  3.69401  4.97266  0.48650  0.95393  1.09861  0.40547
     73   0.27035  3.07057  2.53182  2.19843    246 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.23188  4.76739  1.61720  1.46634  0.26236  1.09861  0.40547
     74   4.20556  0.05397  4.67450  3.56495    247 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02122  4.55673  4.55673  1.46634  0.26236  3.23240  0.04026
     75   4.20556  0.05397  4.67450  3.56495    248 C - - :
          1.38629  1.38629  1.38629  1.38629
          0.02122  4.55673  4.55673  1.46634  0.26236  3.23240  0.04026
     76   0.04392  4.44463  4.07827  4.24781    249 A - - :
          1.38629  1.38629  1.38629  1.38629
          0.01066  4.54618        *  1.46634  0.26236  0.00000        *
//
